The "SARS-unique domain" (SUD) of SARS coronavirus is an oligo(G)-binding protein

Biochemical and Biophysical Research Communications

Volumn 364, Issue 4, 2007, Pages 877-882

  Tan, Jinzhi ^a   Kusov, Yuri ^a   Mutschall, Doris ^a   Tech, Stefanie ^a   Nagarajan, Krishna ^a   Hilgenfeld, Rolf ^a   Schmidt, Christian L ^a  

^a UNIVERSITY OF LÜBECK   (Germany)

Author keywords

Apoptosis; bbc3; Coronavirus; In vitro translation; Non structural protein; Nsp3; Oligo(G) binding; SARS; SUD; ZIGE; Zone interference gel electrophoresis

Indexed keywords

NONSTRUCTURAL PROTEIN 3; VIRUS PROTEIN;

ARTICLE; GEL ELECTROPHORESIS; GEL MOBILITY SHIFT ASSAY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; SARS CORONAVIRUS; SEVERE ACUTE RESPIRATORY SYNDROME; VIRUS GENOME; VIRUS VIRULENCE;

GUANINE NUCLEOTIDES; OLIGORIBONUCLEOTIDES; PROTEIN STRUCTURE, TERTIARY; RNA REPLICASE; SARS VIRUS; VIRAL NONSTRUCTURAL PROTEINS;

CORONAVIRUS; SARS CORONAVIRUS;

EID: 36048975775     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2007.10.081     Document Type: Article

References (28)

1. Peiris J.S.M., Lai S.T., Poon L.L.M., Guan Y., Yam L.Y.C., Lim W., Nicholls J., Yee W.K.S., Cheung M.T., Cheng V.C., et al. Coronavirus as a possible cause of severe acute respiratory syndrome. Lancet 361 (2003) 1319-1325
2. Drosten C., Günther S., Preiser W., van der Werf S., Brodt H.-R., Becker S., Rabenau H., Panning M., Kolesnikova L., Fouchier R.A.M., et al. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N. Engl. J. Med. 348 (2003) 1967-1978
3. Ksiazek T.G., Erdman D., Goldsmith C.S., Zaki S.R., Peret T., Emery S., Tong S., Urbani C., Comer J.A., Lim W., et al. A novel coronavirus associated with severe acute respiratory syndrome. N. Engl. J. Med. 348 (2003) 1953-1966
4. Thiel V., Ivanov K.A., Putics A., Hertzig T., Schelle B., Bayer S., Weißbrich B., Snijder E.J., Rabenau H., Doerr H.W., Gorbalenya A.E., and Ziebuhr J. Mechanisms and enzymes involved in SARS coronavirus genome expression. J. Gen. Virol. 84 (2003) 2305-2315
5. Saikatendu K.S., Joseph J.S., Subramanian V., Clayton T., Griffith M., Moy K., Velasquez J., Neuman B.W., Buchmeier M.J., Stevens R.C., and Kuhn P. Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1′′-phosphate dephosphorylation by a conserved domain of nsP3. Structure 13 (2005) 1665-1675
6. Egloff M.P., Malet H., Putics A., Heinonen M., Dutartre H., Frangeul A., Gruez A., Campanacci V., Cambillau C., Ziebuhr J., Ahola T., and Canard B. Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains. J. Virol. 80 (2006) 8493-8502
7. Snijder E.J., Bredenbeek P.J., Dobbe1 J.C., Thiel V., Ziebuhr J., Poon L.L.M., Guan Y., Rozanov M., Spaan W.J.M., and Gorbalenya A.E. Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J. Mol. Biol. 331 (2003) 991-1004
8. Harcourt B.H., Jukneliene D., Kanjanahaluethai A., Bechill J., Severson K.M., Smith C.M., Rota P.A., and Baker S.C. Identification of severe acute respiratory syndrome coronavirus replicase products and characterization of papain-like protease activity. J. Virol. 24 (2004) 13600-13612
9. Barretto N., Jukneliene D., Ratia K., Chen Z., Mesecar A.D., and Baker S.C. The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity. J. Virol. 24 (2005) 15189-15198
10. Lindner H.A., Fotouhi-Ardakani N., Lytvyn V., Lachance P., Sulea T., and Ménard R. The papain-like protease from the severe acute respiratory syndrome coronavirus is a deubiquitinating enzyme. J. Virol. 79 (2005) 15199-15208
11. Ratia K., Saikatendu K.S., Santarsiero B.D., Barretto N., Baker S.C., Stevens R.C., and Mesecar A.D. Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme. Proc. Natl. Acad. Sci. USA 103 (2006) 5717-5722
12. Devaraj S.G., Wang N., Chen Z., Chen Z., Tseng M., Barretto N., Lin R., Peters C.J., Tseng C.T., Baker S.C., and Li K. Regulation of IRF-3 dependent innate immunity by the papain-like protease domain of the SARS coronavirus. J. Biol. Chem. (2007) M704870200
13. Kanjanahaluethai A., Chen Z., Jukneliene D., and Baker S.C. Membrane topology of murine coronavirus replicase nonstructural protein 3. Virology 361 (2007) 391-401
14. von Brunn A., Teepe C., Simpson J.C., Pepperkok R., Friedel C.C., Zimmer R., Roberts R., Baric R., and Haas J. Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome. PLoS ONE 2 (2007) e459
15. van der Hoek L., Pyrc K., Jebbink M.F., Vermeulen-Oost W., Berkhout R.J., Wolthers K.C., Wertheim-van Dillen P.M., Kaandorp J., Spaargaren J., and Berkhout B. Identification of a new human coronavirus. Nat. Med. 10 (2004) 368-373
16. Woo P.C., Lau S.K., Chu C.M., Chan K.H., Tsoi H.W., Huang Y., Wong B.H., Poon R.W., Cai J.J., Luk W.K., Poon L.L., Wong S.S., Guan Y., Peiris J.S., and Yuen K.Y. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79 (2005) 884-895
17. pro) to secondary structure elements within the 5′ terminus of the HAV genome. RNA 3 (1997) 291-302
18. Abrahams J.P., Kraal B., and Bosch L. Zone-interference gel electrophoresis: a new method for studying weak protein-nucleic acid complexes under native equilibrium conditions. Nucleic Acid Res. 16 (1988) 10099-10108
19. Lewis C.D., Clark S.P., Felsenfeld G., and Gould H. An erythrocyte-specific protein that binds to the poly(dG) region of the chicken beta-globin gene promoter. Genes Dev. 2 (1988) 863-873
20. Xiang M., Lu S.-Y., Musso M., Karsenty G., and Klein W.H. A G-string positive c/s-regulatory element in the LpS1 promoter binds two distinct nuclear factors distributed non-uniformly in Lytechinus pictus embryos. Development 113 (1991) 1345-1355
21. Han J.-W., Flemington C., Houghton A.B., Gu Z., Zambetti G.P., Lutz R.J., Zhu L., and Chittenden T. Expression of bbc3, a-pro-apoptotic BH3-only gene, is regulated by diverse cell death and survival signals. Proc. Natl. Acad. Sci. USA 98 (2001) 11318-11323
22. Milligan J.F., Groebe D.R., Witherell G.W., and Uhlenbeck O.C. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acid Res. 15 (1987) 8783-8798
23. Hollams E.M., Giles K.M., Thomson A.M., and Leedman P.J. mRNA stability and the control of gene expression: implications for human disease. Neurochem. Res. 27 (2002) 957-980
24. Giles K.M., Daly J.M., Beveridge D.J., Thomson A.M., Voon D.C., Furneaux H.M., Jazayeri J.A., and Leedman P.J. The 3′-untranslated region of p21WAF1 mRNA is a composite cis-acting sequence bound by RNA-binding proteins from breast cancer cells, including HuR and poly(C)-binding protein. J. Biol. Chem. 278 (2003) 2937-2946
25. Kawai T., Lal A., Yang X., Galban S., Mazan-Mamczarz K., and Gorospe M. Translational control of cytochrome c by RNA-binding proteins TIA-1 and HuR. Mol. Cell. Biol. 26 (2006) 3295-3307
26. Li X.-L., Andersen J.B., Ezelle H.J., Wilson G.M., and Hassel B.A. Post-transcriptional regulation of RNase-L expression is mediated by the 3′-untranslated region of its mRNA. J. Biol. Chem. 282 (2007) 7950-7960
27. Wie J.S., Whiteford C.C., Cenacchi N., Son C.G., and Khan J. BBC3 mediates fenretinide-induced cell death in neuroblastoma. Oncogene 24 (2005) 7976-7983
28. Mizutani T. Signal transduction in SARS-CoV-infected cells. Ann. NY Acad. Sci. 1102 (2007) 86-95