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Volumn 7, Issue , 2007, Pages

Uncovering the mutation-fixation correlation in short lineages

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPARATIVE STUDY; CORRELATION ANALYSIS; GENE MUTATION; GENE SEQUENCE; HUMAN; MAMMAL; MOUSE; MUTATION RATE; NOISE; NONHUMAN; RAT; SPECIES; STOCHASTIC MODEL; ANIMAL; BIOLOGICAL MODEL; DOG; GENETICS; MACACA; MOLECULAR EVOLUTION; MUTATION; PAN TROGLODYTES; SPECIES DIFFERENCE; STATISTICS;

EID: 36048932967     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-168     Document Type: Article
Times cited : (8)

References (24)
  • 1
    • 31144465926 scopus 로고    scopus 로고
    • Hearing silence: Non-neutral evolution at synonymous sites in mammals
    • 10.1038/nrg1770. 16418745
    • Hearing silence: non-neutral evolution at synonymous sites in mammals. JV Chamary JL Parmley LD Hurst, Nat Rev Genet 2006 7 2 98 108 10.1038/nrg1770 16418745
    • (2006) Nat Rev Genet , vol.7 , Issue.2 , pp. 98-108
    • Chamary, J.V.1    Parmley, J.L.2    Hurst, L.D.3
  • 2
    • 20644465818 scopus 로고    scopus 로고
    • A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate
    • 10.1016/j.tig.2005.05.005. 15946765
    • A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate. GJ Wyckoff CM Malcom EJ Vallender BT Lahn, Trends Genet 2005 21 7 381 385 10.1016/j.tig.2005.05.005 15946765
    • (2005) Trends Genet , vol.21 , Issue.7 , pp. 381-385
    • Wyckoff, G.J.1    Malcom, C.M.2    Vallender, E.J.3    Lahn, B.T.4
  • 3
    • 0015722319 scopus 로고
    • Slightly deleterious mutant substitutions in evolution
    • 10.1038/246096a0. 4585855
    • Slightly deleterious mutant substitutions in evolution. T Ohta, Nature 1973 246 5428 96 98 10.1038/246096a0 4585855
    • (1973) Nature , vol.246 , Issue.5428 , pp. 96-98
    • Ohta, T.1
  • 4
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • 10.1038/217624a0. 5637732
    • Evolutionary rate at the molecular level. M Kimura, Nature 1968 217 129 624 626 10.1038/217624a0 5637732
    • (1968) Nature , vol.217 , Issue.129 , pp. 624-626
    • Kimura, M.1
  • 6
    • 0025779286 scopus 로고
    • Synonymous nucleotide substitution rates in mammalian genes: Implications for the molecular clock and the relationship of mammalian orders
    • 2068073. 10.1073/pnas.88.14.5974
    • Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders. M Bulmer KH Wolfe PM Sharp, Proc Natl Acad Sci U S A 1991 88 14 5974 5978 2068073 10.1073/pnas.88.14.5974
    • (1991) Proc Natl Acad Sci U S a , vol.88 , Issue.14 , pp. 5974-5978
    • Bulmer, M.1    Wolfe, K.H.2    Sharp, P.M.3
  • 7
    • 0028932702 scopus 로고
    • Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions
    • 10.1007/BF00166602. 7714909
    • Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions. D Mouchiroud C Gautier G Bernardi, J Mol Evol 1995 40 1 107 113 10.1007/BF00166602 7714909
    • (1995) J Mol Evol , vol.40 , Issue.1 , pp. 107-113
    • Mouchiroud, D.1    Gautier, C.2    Bernardi, G.3
  • 8
    • 0032483028 scopus 로고    scopus 로고
    • Evolutionary parameters of the transcribed mammalian genome: An analysis of 2,820 orthologous rodent and human sequences
    • 9689093. 10.1073/pnas.95.16.9407
    • Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences. W Makalowski MS Boguski, Proc Natl Acad Sci U S A 1998 95 16 9407 9412 9689093 10.1073/pnas.95.16.9407
    • (1998) Proc Natl Acad Sci U S a , vol.95 , Issue.16 , pp. 9407-9412
    • Makalowski, W.1    Boguski, M.S.2
  • 9
    • 0037154209 scopus 로고    scopus 로고
    • Mutation rates in mammalian genomes
    • 11792858. 10.1073/pnas.022629899
    • Mutation rates in mammalian genomes. S Kumar S Subramanian, Proc Natl Acad Sci U S A 2002 99 2 803 808 11792858 10.1073/pnas.022629899
    • (2002) Proc Natl Acad Sci U S a , vol.99 , Issue.2 , pp. 803-808
    • Kumar, S.1    Subramanian, S.2
  • 10
    • 0036667703 scopus 로고    scopus 로고
    • Is the synonymous substitution rate in mammals gene-specific?
    • 12140253
    • Is the synonymous substitution rate in mammals gene-specific? EJ Williams LD Hurst, Mol Biol Evol 2002 19 8 1395 1398 12140253
    • (2002) Mol Biol Evol , vol.19 , Issue.8 , pp. 1395-1398
    • Williams, E.J.1    Hurst, L.D.2
  • 11
    • 33644630612 scopus 로고    scopus 로고
    • Comparisons of dN/dS are time dependent for closely related bacterial genomes
    • 10.1016/j.jtbi.2005.08.037. 16239014
    • Comparisons of dN/dS are time dependent for closely related bacterial genomes. EP Rocha JM Smith LD Hurst MT Holden JE Cooper NH Smith EJ Feil, J Theor Biol 2006 239 2 226 235 10.1016/j.jtbi.2005.08.037 16239014
    • (2006) J Theor Biol , vol.239 , Issue.2 , pp. 226-235
    • Rocha, E.P.1    Smith, J.M.2    Hurst, L.D.3    Holden, M.T.4    Cooper, J.E.5    Smith, N.H.6    Feil, E.J.7
  • 12
    • 52449148668 scopus 로고
    • The role of compensatory neutral mutation in molecular evolution
    • The role of compensatory neutral mutation in molecular evolution. M Kimura, J Genet 1985 64 7 19
    • (1985) J Genet , vol.64 , pp. 7-19
    • Kimura, M.1
  • 13
    • 0041324003 scopus 로고
    • Diffusion models in population genetics with special reference to fixation time of moilecular mutants under mutational pressure
    • New York, New York , Springer-Verlag Ohta T, Aoki K
    • Diffusion models in population genetics with special reference to fixation time of moilecular mutants under mutational pressure. M Kimura, Population Genetics and Molecular Evolution New York, New York, Springer-Verlag, Ohta T, Aoki K, 1985 19 39
    • (1985) Population Genetics and Molecular Evolution , pp. 19-39
    • Kimura, M.1
  • 14
    • 28444463255 scopus 로고    scopus 로고
    • Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis
    • 10.1038/ng1685. 16282975
    • Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis. SS Choi W Li BT Lahn, Nat Genet 2005 37 12 1367 1371 10.1038/ng1685 16282975
    • (2005) Nat Genet , vol.37 , Issue.12 , pp. 1367-1371
    • Choi, S.S.1    Li, W.2    Lahn, B.T.3
  • 15
    • 0015494017 scopus 로고
    • On the organization of higher chromosomes
    • 4633814
    • On the organization of higher chromosomes. EC Cox, Nat New Biol 1972 239 92 133 134 4633814
    • (1972) Nat New Biol , vol.239 , Issue.92 , pp. 133-134
    • Cox, E.C.1
  • 16
    • 0029074889 scopus 로고
    • Modifiers of mutation-selection balance: General approach and the evolution of mutation rates
    • Modifiers of mutation-selection balance: general approach and the evolution of mutation rates. AS Kondrashov, Genet Res 1995 66 53 69
    • (1995) Genet Res , vol.66 , pp. 53-69
    • Kondrashov, A.S.1
  • 17
    • 19344378811 scopus 로고    scopus 로고
    • Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome
    • 14966531. 10.1371/journal.pbio.0020029
    • Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome. JH Chuang H Li, PLoS Biol 2004 2 2 E29 14966531 10.1371/journal.pbio.0020029
    • (2004) PLoS Biol , vol.2 , Issue.2 , pp. 29
    • Chuang, J.H.1    Li, H.2
  • 20
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • 10.1126/science.278.5338.631. 9381173
    • A genomic perspective on protein families. RL Tatusov EV Koonin DJ Lipman, Science 1997 278 5338 631 637 10.1126/science.278.5338.631 9381173
    • (1997) Science , vol.278 , Issue.5338 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 21
    • 33750982415 scopus 로고    scopus 로고
    • SPEED: A molecular-evolution-based database of mammalian orthologous groups
    • 10.1093/bioinformatics/btl471. 16966361
    • SPEED: a molecular-evolution-based database of mammalian orthologous groups. EJ Vallender JE Paschall CM Malcom BT Lahn GJ Wyckoff, Bioinformatics 2006 22 22 2835 2837 10.1093/bioinformatics/btl471 16966361
    • (2006) Bioinformatics , vol.22 , Issue.22 , pp. 2835-2837
    • Vallender, E.J.1    Paschall, J.E.2    Malcom, C.M.3    Lahn, B.T.4    Wyckoff, G.J.5
  • 22
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • 10.1007/BF02407308. 8433381
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution. WH Li, J Mol Evol 1993 36 1 96 99 10.1007/BF02407308 8433381
    • (1993) J Mol Evol , vol.36 , Issue.1 , pp. 96-99
    • Li, W.H.1
  • 23
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • 7968486
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences. N Goldman Z Yang, Mol Biol Evol 1994 11 5 725 736 7968486
    • (1994) Mol Biol Evol , vol.11 , Issue.5 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 24
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • 3444411
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. M Nei T Gojobori, Mol Biol Evol 1986 3 5 418 426 3444411
    • (1986) Mol Biol Evol , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.