Characterization of geographically isolated accessions in five Alstroemeria L. species (Chile) using FISH of tandemly repeated DNA sequences and RAPD analysis

Plant Systematics and Evolution

Volumn 269, Issue 1-2, 2007, Pages 1-14

  Baeza, C ^a   Schrader, O ^b   Budahn, H ^b  

^a UNIVERSITY OF CONCEPCIÓN   (Chile)

^b INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

Author keywords

18 25S rDNA; 5S rDNA; A. hookeri; A. ligtu; A. pelegrina; A. presliana; Alstroemeria aurea; Alstroemeriaceae; FISH; Karyotype; Polymorphism; RAPD marker; Repetitive DNA

Indexed keywords

ALSTROEMERIA; ALSTROEMERIA AUREA; ALSTROEMERIA HOOKERI; ALSTROEMERIA LIGTU; ALSTROEMERIA PELEGRINA; ALSTROEMERIA PRESLIANA; ALSTROEMERIACEAE;

EID: 35848935438     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-007-0591-5     Document Type: Article

References (50)

1. Adachi J, Watanabe K, Fukui K, Ohmido N and Kosuge K (1997). Chromosomal location and reorganization of the 45S and 5S rDNA in the Brachyscome lineariloba complex (Asteraceae). J Pl Res 110: 371-377
2. Arano H and Saito H (1980). Cytological studies in family Umbelliferae 5. Karyotypes of seven species in subtribe Seselinae. Kromosomo 2: 471-480
3. Avramova Z (2002). Heterochromatin in animals and plants. Similarities and differences. Pl Physiol 129: 40-49
4. Bennett S, Leitch I and Bennett M (1995). Chromosome identification and mapping in the grass Zingeria biebersteiniana (2n = 4) using fluorochromes. Chrom Res 3: 101-108
5. Buitendijk J and Ramanna M (1996). Giemsa C-banded karyotypes of eight species of Alstroemeria L. and some of their hybrids. Ann Bot 78: 449-457
6. Buitendijk J, Boon E and Ramanna M (1997). Nuclear DNA content in twelve species of Alstroemeria L. and some of their hybrids. Ann Bot 79: 343-353
7. Buitendijk J, Peters A, Quene R and Ramanna M (1998). Genome size variation and C-band polymorphism in Alstroemeria aurea, A. ligtu and A. magnifica (Alstroemeriaceae). Pl Syst Evol 212: 87-106
8. Cuadrado A, Ceoloni C and Jouve N (1995). Variation in highly repetitive DNA composition of heterochromatin in rye studied by fluorescence in situ hybridization. Genome 38: 1061-1069
9. Cuadrado A and Jouve N (1995). Fluorescent in situ hybridization and C-banding analyses of highly repetitive DNA sequences in the heterochromatin of rye (Secale montanum Guss) and wheat incorporating S. montanum chromosome segments. Genome 38: 795-802
10. De Jeu M, Laschuit J, Chevalier F and Visser R (1995). Hybrid detection in Alstroemeria by use of species-specific repetitive probes. Acta Horti Orn Pl Imp 420: 62-64
11. De Jeu M, Lasschuit J, Kuipers A, Kamstra S and Visser R (1997). Characterization and localization of repetitive DNA sequences in the ornamental Alstroemeria aurea Graham. Theor Appl Genet 94: 982-990
12. De Jong J, Fransz P and Zabel P (1999). High resolution FISH in plants - techniques and applications. Trends Pl Sci 4: 258-263
13. Dellaporta S, Wood J and Hicks J (1983). A plant DNA minipreparation: Version II. Pl Molec Biol Rep 1: 19-21
14. Gottlob-McHugh S, Levesque M, MacKenzie K, Olson M, Yarosh O and Johnson D (1990). Organization of the 5S rRNA genes in the soybean Glycine max (L.) Merrill and conservation of the 5S rDNA repeat structure in higher plants. Genome 33: 486-494
15. Grewal S and Moazed D (2003). Heterochromatin and epigenetic control of gene expression. Science 301: 798-802
16. Gupta P, Sharma S, Kumar S, Balyan H, Beharav A and Nevo E (2004). Adaptive ribosomal DNA polymorphism in wild barley at a mosaic microsite, Nese Yaàr in Israel. Pl Sci 166: 1555-1563
17. Hall K and Parker J (1995). Stable chromosome fission associated with rDNA mobility. Chrom Res 3: 417-422
18. Hasterok R, Wolny E, Hosiawa M, Kowalczyk M, Kulak-Ksiazczyk S, Ksiazczyk T, Heneen W and Maluszynska J (2006). Comparative analysis of rDNA distribution in chromosomes of various species of Brassicaceae. Ann Bot 97: 205-216
19. Houben A, Leach C, Verlin D, Rofe R and Timmis J (1997). A repetitive DNA sequence common to the different B chromosomes of the genus Brachycome. Chromosoma 106: 513-519
20. Ito M, Miyamoto J, Mori Y, Fujimoto S, Uchiumi T, Abe M, Suzuki A, Tabata S and Fukui K (2000). Genome and chromosome dimensions of Lotus japonicus. J Pl Res 113: 435-442
21. Kakeda K, Fukui K and Yamagata H (1991). Heterochromatic differentiation in barley chromosomes revealed by C- and N-banding techniques. Theor Appl Genet 81: 144-150
22. Kamstra S, Ramanna M, De Jeu M, Kuipers A and Jacobsen E (1999). Homoeologous chromosome pairing in the distant hybrid Alstroemeria aurea x A. inodora and the genome composition of its backcross derivatives determined by fluorescence in situ hybridization with species-specific probes. Heredity 82: 69-78
23. Kamstra S, Kuipers A, De Jeu M, Ramanna M and Jacobsen E (1997). Physical localisation of repetitive DNA sequences in Alstroemeria: karyotyping of two species with species-specific and ribosomal DNA. Genome 40: 652-658
24. Koo D, Choi H, Cho J, Hur Y and Bang J (2005). A high-resolution karyotype of cucumber (Cucumis sativus L. 'Winter Long') revealed by C-banding, pachytene analysis, and RAPD-aided fluorescence in situ hybridization. Genome 48: 534-540
25. Levan A, Fredga K and Sandberg A (1964). Nomenclature for centromeric poisition on chromosomes. Hereditas 52: 201-220
26. Lim K, Wennekes J, de Jong F, Jacobsen E and van Tuyl J (2001). Karyotype analysis of Lilium longiflorum and Lilium rubellum by chromosome banding and fluorescence in situ hybridisation. Genome 44: 911-918
27. Neves N, Delgado M, Silva M, Caperta A, Morais-Cecilio L and Viegas W (2005). Ribosomal DNA heterochromatin in plants. Cytogenet Genome Res 109: 104-111
28. Muñoz M, Moreira A (2003) Alstroemerias de Chile. Diversidad, distribución y conservación. Taller La Era, Santiago. 140 p
29. Panzera F, Giménez M, López J, Giménez G, Cuadrado A, Shaw P, Beven A, Canovas J and DeLaTorre C (1996). Nucleolar organizer expression in Allium cepa L. chromosomes. Chromosoma 105: 12-19
30. Pedersen C and Linde-Laursen I (1994). Chromosomal locations of four minor rDNA loci and a marker microsatellite sequence in barley. Chrom Res 2: 65-71
31. Peterka H, Budahn H, Schrader O, Ahne R and Schulze W (2004). Transfer of resistance against the beet cyst nematode from radish (Raphanus sativus) to rape (Brassica napus) by monosomic chromosome addition. Theor Appl Genet 109: 30-41
32. Redi C, Garagna S, Zacharias H, Zuccotti M and Capanna E (2001). The other chromatin. Chromosoma 110: 136-147
33. Reeves A (2001). MicroMeasure: A new computer program for the collection and analysis of cytogenetic data. Genome 44: 439-443
34. Rieseberg L (2001). Chromosomal rearrangements and speciation. Trends Ecol Evol 16: 351-358
35. Ruas C, Vanzela A, Santos M, Fregonezi J, Ruas P, Matzenbacher N and de Aguiar-Perecin M (2005). Chromosomal organization and phylogenetic relationships in Hypochaeris species (Asteraceae) from Brazil. Genet Molec Biol 28: 129-139
36. Sanso A (2002). Chromosome studies in Andean taxa of Alstroemeria (Alstroemeriaceae). Bot J Linn Soc 138: 451-459
37. Sanso A and Hunziker J (1998). Karyological studies in Alstroemeria and Bomarea (Alstroemeriaceae). Hereditas 129: 67-74
38. Schmidt T and Heslop-Harrison JS (1998). Genomes, genes and junk: the large-scale organization of plant chromosomes. Trends Pl Sci 3: 159-199
39. Schrader O, Budahn H and Ahne R (2000). Detection of 5S and 25S rRNA genes in Sinapis alba, Raphanus sativus and Brassica napus by double fluorescence in situ hybridization. Theor Appl Genet 100: 665-669
40. Schubert I and Wobus U (1985). In situ hybridization confirms jumping nucleolus organizing regions in Allium. Chromosoma 92: 143-148
41. Stephens J, Tsuchiya T and Hughes H (1993). Chromosome studies in Alstroemeria pelegrina L. Int J Pl Sci 154: 565-571
42. Stevenson M, Armstrong S, Jones G and FordLloyd B (1999). Distribution of a 375 bp repeat sequence in Allium (Alliaceae) as revealed by FISH. Pl Syst Evol 217: 31-42
43. Stupar R, Song J, Tek A, Cheng Z, Dong F and Jiang J (2002). Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats. Genetics 162: 1435-1444
44. Vicari M, Artoni R and Bertollo L (2003). Heterochromatin polymorphism associated with 18S rDNA: a differential pathway among Hoplias malabaricus fish populations. Cytogenet Genome Res 101: 24-28
45. Wang X, Chen P, Liu D, Zhang P, Zhou B, Friebe B and Gill B (2001). Molecular cytogenetic characterization of Roegneria ciliaris chromosome additions in common wheat. Theor Appl Genet 102: 651-657
46. Weiss H and Maluszynska J (2000). Chromosomal rearrangement in autotetraploid plants of Arabidopsis thaliana. Hereditas 133: 255-261
47. Weiss-Schneeweiss H, Stuessy T, Siljak-Yakovlev S, Baeza C and Parker J (2003). Karyotype evolution in South American species of Hypochaeris (Asteraceae, Lactuceae). Pl Syst Evol 241: 171-184
48. Williams J, Kubelik A, Livak K, Rafalski J and Tingey S (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acids Res 18: 6531-6535
49. Yakura K and Tanifuji S (1983). Molecular cloning and restriction analysis of Eco RI-fragments of Vicia faba rDNA. Pl Cell Physiol 24: 1327-1330
50. Zhang D and Sang T (1998). Chromosomal structure reaarangement of Paeonia brownii and P. californica revealed by fluorescence in situ hybridization. Genome 41: 848-853