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Volumn 277, Issue 1, 2007, Pages 98-106

Comparison of five rep-PCR genomic fingerprinting methods for differentiation of fecal Escherichia coli from humans, poultry and wild birds

Author keywords

(GTG)5 PCR; Bacterial source tracking; DNA fingerprinting; Escherichia coli; Molecular typing; rep PCR

Indexed keywords

LAKE WATER;

EID: 35748939676     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2007.00948.x     Document Type: Article
Times cited : (106)

References (29)
  • 1
    • 0032731967 scopus 로고    scopus 로고
    • Seasonal enumeration of fecal coliform bacteria from the feces of ring-billed gulls (Larus delawarensis) and Canada geese (Branta canadensis)
    • Alderisio KA Deluca N (1999) Seasonal enumeration of fecal coliform bacteria from the feces of ring-billed gulls (Larus delawarensis) and Canada geese (Branta canadensis). Appl Environ Microbiol 65: 5628 5630.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5628-5630
    • Alderisio, K.A.1    Deluca, N.2
  • 2
    • 0037337209 scopus 로고    scopus 로고
    • Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal Escherichia coli from humans and animals
    • Carson CA, Shear BL, Ellersieck MR Schnell JD (2003) Comparison of ribotyping and repetitive extragenic palindromic-PCR for identification of fecal Escherichia coli from humans and animals. Appl Environ Microbiol 69: 1836 1839.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1836-1839
    • Carson, C.A.1    Shear, B.L.2    Ellersieck, M.R.3    Schnell, J.D.4
  • 3
    • 0031764193 scopus 로고    scopus 로고
    • PCR differentiation of Escherichia coli from other Gram-negative bacteria using primers derived from the nucleotide sequences flanking the gene encoding the universal stress protein
    • Chen J Griffiths MW (1998) PCR differentiation of Escherichia coli from other Gram-negative bacteria using primers derived from the nucleotide sequences flanking the gene encoding the universal stress protein. Lett Appl Microbiol 27: 369 371.
    • (1998) Lett Appl Microbiol , vol.27 , pp. 369-371
    • Chen, J.1    Griffiths, M.W.2
  • 6
    • 0034130242 scopus 로고    scopus 로고
    • Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources
    • Dombek PE, Johnson LK, Zimmerley ST Sadowsky MJ (2000) Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. Appl Environ Microbiol 66: 2572 2577.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2572-2577
    • Dombek, P.E.1    Johnson, L.K.2    Zimmerley, S.T.3    Sadowsky, M.J.4
  • 7
    • 0035960740 scopus 로고    scopus 로고
    • Applicability of rep-PCR fingerprinting for identification of Lactobacillus species
    • Gevers D, Huys G Swings J (2001) Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol Lett 205: 31 36.
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 31-36
    • Gevers, D.1    Huys, G.2    Swings, J.3
  • 8
    • 0036272875 scopus 로고    scopus 로고
    • Development of a procedure for discriminating among Escherichia coli isolates from animal and human sources
    • Guan S, Xu R, Chen S, Odumeru J Gyles C (2002) Development of a procedure for discriminating among Escherichia coli isolates from animal and human sources. Appl Environ Microbiol 68: 2690 2698.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2690-2698
    • Guan, S.1    Xu, R.2    Chen, S.3    Odumeru, J.4    Gyles, C.5
  • 9
    • 0033831590 scopus 로고    scopus 로고
    • Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: Use in predicting the source of fecal contamination in subtropical waters
    • Harwood VJ, Whitlock J Withington V (2000) Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: use in predicting the source of fecal contamination in subtropical waters. Appl Environ Microbiol 66: 3698 3704.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3698-3704
    • Harwood, V.J.1    Whitlock, J.2    Withington, V.3
  • 10
    • 0029897808 scopus 로고    scopus 로고
    • Threat to public health from gulls
    • Hatch JJ (1996) Threat to public health from gulls. Int J Environ Health Res 6: 5 16.
    • (1996) Int J Environ Health Res , vol.6 , pp. 5-16
    • Hatch, J.J.1
  • 12
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
    • Hunter PR Gaston MA (1988) Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26: 2465 2466.
    • (1988) J Clin Microbiol , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 13
    • 4143115645 scopus 로고    scopus 로고
    • Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution
    • Johnson LK, Brown MB, Carruthers EA, Ferguson JA, Dombek PE Sadowsky MJ (2004) Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution. Appl Environ Microbiol 70: 4478 4485.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4478-4485
    • Johnson, L.K.1    Brown, M.B.2    Carruthers, E.A.3    Ferguson, J.A.4    Dombek, P.E.5    Sadowsky, M.J.6
  • 14
    • 1642345523 scopus 로고    scopus 로고
    • A comparison of AFLP and ERIC-PCR analyses for discriminating Escherichia coli from cattle, pig and human sources
    • Leung KT, Mackereth R, Tien YC Topp E (2004) A comparison of AFLP and ERIC-PCR analyses for discriminating Escherichia coli from cattle, pig and human sources. FEMS Microbiol Ecol 47: 111 119.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 111-119
    • Leung, K.T.1    MacKereth, R.2    Tien, Y.C.3    Topp, E.4
  • 15
    • 0028889921 scopus 로고
    • Identification of Escherichia coli strain from cows with clinical mastitis by serotyping and DNA polymorphism patterns with REP and ERIC primers
    • Lipman JA, de Nijs A, Lam TJGM Gaastra W (1995) Identification of Escherichia coli strain from cows with clinical mastitis by serotyping and DNA polymorphism patterns with REP and ERIC primers. Vet Microbiol 43: 13 19.
    • (1995) Vet Microbiol , vol.43 , pp. 13-19
    • Lipman, J.A.1    De Nijs, A.2    Tjgm, L.3    Gaastra, W.4
  • 16
    • 0038221147 scopus 로고    scopus 로고
    • Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting
    • McLellan SL, Daniels AD Salmore AK (2003) Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting. Appl Environ Microbiol 69: 2587 2594.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2587-2594
    • McLellan, S.L.1    Daniels, A.D.2    Salmore, A.K.3
  • 17
    • 4444356159 scopus 로고    scopus 로고
    • Source tracking fecal bacteria in water: A critical review of current methods
    • Meays CL, Broersma K, Nordin R Mazumder A (2004) Source tracking fecal bacteria in water: a critical review of current methods. J Environ Manage 73: 71 79.
    • (2004) J Environ Manage , vol.73 , pp. 71-79
    • Meays, C.L.1    Broersma, K.2    Nordin, R.3    Mazumder, A.4
  • 18
    • 33645127191 scopus 로고    scopus 로고
    • Geographical variation in antibiotic resistance profiles of Escherichia coli isolated from swine, poultry, beef and diary cattle farm water retention ponds in Florida
    • Parveen S, Lukasik J, Scott TM, Tamplin ML, Portier KM, Sheperd S, Braun K Farrah SR (2006) Geographical variation in antibiotic resistance profiles of Escherichia coli isolated from swine, poultry, beef and diary cattle farm water retention ponds in Florida. J Appl Microbiol 100: 50 57.
    • (2006) J Appl Microbiol , vol.100 , pp. 50-57
    • Parveen, S.1    Lukasik, J.2    Scott, T.M.3    Tamplin, M.L.4    Portier, K.M.5    Sheperd, S.6    Braun, K.7    Farrah, S.R.8
  • 19
    • 0002924916 scopus 로고    scopus 로고
    • Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis
    • Caetano-Anollés, G. Gresshoff, P.M., ed), pp. John Wiley & Sons, New York.
    • Rademaker JLW de Bruijn FJ (1997) Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. DNA Markers: Protocols, Applications, and Overviews (Caetano-Anollés G Gresshoff PM, ed), pp. 151 171. John Wiley & Sons, New York.
    • (1997) DNA Markers: Protocols, Applications, and Overviews , pp. 151-171
    • Rademaker, J.L.W.1    De Bruijn, F.J.2
  • 20
    • 23744508419 scopus 로고    scopus 로고
    • Comparison of five repetitive-sequence-based PCR typing methods for molecular discrimination of Salmonella enterica isolates
    • Rasschaert G, Houf K, Imberechts H, Grijspeerdt K, De Zutter L Heyndrickx M (2005) Comparison of five repetitive-sequence-based PCR typing methods for molecular discrimination of Salmonella enterica isolates. J Clin Microbiol 43: 3615 3623.
    • (2005) J Clin Microbiol , vol.43 , pp. 3615-3623
    • Rasschaert, G.1    Houf, K.2    Imberechts, H.3    Grijspeerdt, K.4    De Zutter, L.5    Heyndrickx, M.6
  • 22
    • 0042529200 scopus 로고    scopus 로고
    • Use of 16S-23S rRNA intergenic spacer region PCR and repetitive extragenic palindromic PCR analyses of Escherichia coli isolates to identify nonpoint fecal sources
    • Seurinck S, Verstraete W Siciliano SD (2003) Use of 16S-23S rRNA intergenic spacer region PCR and repetitive extragenic palindromic PCR analyses of Escherichia coli isolates to identify nonpoint fecal sources. Appl Environ Microbiol 69: 4942 4950.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4942-4950
    • Seurinck, S.1    Verstraete, W.2    Siciliano, S.D.3
  • 25
    • 84856107016 scopus 로고    scopus 로고
    • US EPA (. Office of water, United States Environmental Protection Agency, Washington, DC, EPA 832-F-02-010. pp. 1-12.
    • US EPA (2002) Wastewater Technology Fact Sheet, Bacterial Source Tracking. Office of water, United States Environmental Protection Agency, Washington, DC, EPA 832-F-02-010. pp. 1-12.
    • (2002) Wastewater Technology Fact Sheet, Bacterial Source Tracking.
  • 26
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA-sequences in eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic J, Koeuth T Lupski JR (1991) Distribution of repetitive DNA-sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19: 6823 6831.
    • (1991) Nucleic Acids Res , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 27
    • 0027992990 scopus 로고
    • Genomic fingerprinting of bacteria with repetitive sequence-based polymerase chain reaction
    • Versalovic J, Schneider M, de Bruijn FJ Lupski JR (1994) Genomic fingerprinting of bacteria with repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5: 25 40.
    • (1994) Methods Mol Cell Biol , vol.5 , pp. 25-40
    • Versalovic, J.1    Schneider, M.2    De Bruijn, F.J.3    Lupski, J.R.4
  • 28
    • 35748952594 scopus 로고    scopus 로고
    • WHO (. Emerging issues in water and infectious diseases. World Health Organization, Geneva (online),. accessed 13 December 2006.
    • WHO (2003) Emerging issues in water and infectious diseases. World Health Organization, Geneva (online),. accessed 13 December 2006.
    • (2003)
  • 29
    • 0032771988 scopus 로고    scopus 로고
    • Use of antibiotic resistance analysis to identify nonpoint sources of fecal pollution
    • Wiggins BA, Andrews RW, Conway RA et al 1999) Use of antibiotic resistance analysis to identify nonpoint sources of fecal pollution. Appl Environ Microbiol 65: 3483 3486.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3483-3486
    • Wiggins, B.A.1    Andrews, R.W.2    Conway, R.A.3    Al, E.4


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