New type of heloc and 27 ribbon structure formation in poly ΔLeu peptides: Construction of a single-handed template

Biomacromolecules

Volumn 8, Issue 10, 2007, Pages 3093-3101

  Nandel, Fateh S ^a   Jaswal, Radhika ^a  

^a PANJAB UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

DEHYDROAMINO ACID RESIDUES; ENZYMATIC DEGRADATION; RIBBON STRUCTURE FORMATION;

HYDROGEN BONDS; HYDROPHOBICITY; MOLECULAR STRUCTURE; PEPTIDES; PERTURBATION TECHNIQUES;

AMINO ACIDS;

ANTIINFECTIVE AGENT; PENTAPEPTIDE; PEPTIDE; POLY ALPHA,BETA DEHYDROLEUCINE; UNCLASSIFIED DRUG; BIOMATERIAL; CARBON; LEUCINE; OLIGOPEPTIDE;

ARTICLE; BETA SHEET; CONTROLLED STUDY; DRUG DESIGN; ENZYMATIC DEGRADATION; HYDROGEN BOND; HYDROPHOBICITY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; QUANTUM MECHANICS; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN ENGINEERING; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; QUANTUM THEORY;

BIOCOMPATIBLE MATERIALS; CARBON; HYDROGEN BONDING; LEUCINE; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR CONFORMATION; OLIGOPEPTIDES; PEPTIDES; PROTEIN CONFORMATION; PROTEIN ENGINEERING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; QUANTUM THEORY; SOFTWARE;

EID: 35548995008     PISSN: 15257797     EISSN: None     Source Type: Journal    
DOI: 10.1021/bm700504h     Document Type: Article

References (81)

1. Gellman, S. H. Acc. Chem. Res. 1998, 31, 173-180.
2. Toniolo, C.; Yoshikawa, S. Biopolymers (Pept. Sci.) 1998, 47, 3-4.
3. Iwatsuki, M. Kobunshi 1990, 39, 532-535 (Chem. Abstr. 1990, 114, 43846V).
4. Giangaspero, A.; Sandri, L.; Tossi, A. Eur. J. Biochem. 2001, 268, 5589-5600.
5. Oren, Z.; Shai, Y. Biopolymers (Pept. Sci.) 1998, 47, 451-463.
6. Zhong, L.; Putnam, R. J.; Johnson, W. C.; Rao, A. G. Int. J. Peptide Protein Res. 1995, 45, 337-347.
7. Fernandez-Carneado, J.; Kogan, M. J.; Pujals, S.; Giralt, E. Biopolymers (Pept. Sci.) 2004, 76, 196-203.
8. Kamysz, W.; Okroj, M.; Lukasiak, J. Acta Biochim. Pol. 2003, 50, 461-469.
9. Dhople, V.; Krukemeyer, A.; Ramamoorthy, A. Biochim. Biophys. Acta 2006, 1758, 1499-1512.
10. Jain, R. M.; Chauhan, V. S. Biopolymers (Pept. Sci.) 1996, 40, 105-119.
11. Singh, T. P.; Narula, P.; Patel, H. C. Acta Crystallogr 1998, 1346, 539-545.
12. Singh, T. P.; Kaur, P. Prog. Biophys. Mol. Biol. 1996, 66, 141-165.
13. Goel, V. K.; Somvanshi, R. K.; Dey, S.; Singh, T. P. J. Peptide Res. 2005, 66, 68-74.
14. Vijayaraghavan, R.; Kumar, P.; Dey, S.; Singh, T. P. J. Peptide Res. 2003, 62, 63-69.
15. Givot, I. L.; Abeles, R. H. J. Biol. Chem. 1970, 245, 3271-3273.
16. Nandel, F. S.; Malik, N.; Singh, B.; Virdi, M. Indian J. Biochem. Biophys. 1999, 36, 195-203.
17. Parkhurst, J. R.; Hodgins, D. S. Arch. Biochem. Biophys. 1972, 152, 597.
18. Shimohigashi, Y.; Dunning, J. W.; Kolar, A. J., Jr.; Stammer, C. H. Int. J. Peptide Protein Res. 1983, 21, 202.
19. Shimohigashi, Y.; Stammer, C. H.; Costa, T.; Von Voight-lander, P. F. Int. J. Peptide Protein Res. 1983, 22, 489.
20. Nitz, T. J.; Shimohigashi, Y.; Costa, T.; Chen, H. C.; Stammer, C. H. Int. J. Peptide Protein Res. 1986, 27, 522.
21. Salvadori, S.; Marastoni, M.; Balboni, G.; Marzola, G.; Tomatis, R. Int. J. Peptide Protein Res. 1986, 28, 254.
22. Salvadori, S.; Marastoni, M.; Balboni, G.; Marzola, G.; Tomatis, R. Int. J. Peptide Protein Res. 1986, 28, 262.
23. Castiglione-Morelli, M. A.; Saviano, G.; Temussi, P. A.; Balboni, G.; Alvadori, S.; Tomatis, R. Biopolymers 1989, 28, 129.
24. Grim, M. D.; Chauhan, V.; Shimohigashi, Y.; Kolar, A. J.; Stammer, C. H. J. Org. Chem. 1981, 46, 2671.
25. Felix, A. M.; Wan, C. T.; Liebman, C. T.; Delaney, C. M.; Mowles, T.; Berrghardt, B. A.; Charnecki. A. M.; Meienhofer, J. Int. J. Pept. Protein Res. 1977, 10, 299.
26. Fisher, G. H.; Berryer, P.; Ryan, P. J. W.; Chauhan, V.; Stammer, C. H. Arch. Biochem. Biophys. 1981, 211, 269.
27. Subasinghe, N.; Schulte, M.; Chan, M. Y.-M.; Roon, J. R.; Koerner, J. F.; Johnson, P. L. J. Med. Chem. 1990, 33, 2734.
28. Toniolo, C.; Benedetti, E. Trends Biochem. Sci. 1991, 16, 350-353.
29. Ramagopal, U. A.; Ramakumar, S.; Joshi, R. M.; Chauhan, V. S. J. Pept. Sci. 1998, 52, 208-215.
30. Komatsubara, S.; Kisumi, M.; Chibata, I.; Gregario, M. M. V.; Miller, V. S.; Crout, D. H. G. J. Chem. Soc., Chem. Commun. 1977, 839.
31. Stammer, C. H. In Chemistry and Biochemistry of Amino Acid, Peptides and Proteins; Weinstein, B., Ed.; Marcel Dekker: New York, 1982; Vol. VI, pp 33-74.
32. Nitz, T. J.; Shimohigashi, Y.; Costa, T.; Chen, H. C.; Stammer, C. H. Int. J. Pept. Protein Res. 1986, 27, 522-529.
33. Mosberg, H. I.; Dua, R. K.; Pogozheva, I. D.; Lomize, A. L. Biopolymers 1996, 39, 287-296.
34. Edwards, J. W.; Fanger, B. O.; Cashman, E. A.; Eaton, S. R.; Mclean, L. R. In Peptides: Chemistry and Biology, Proceedings of the 12th American Pepide Symposium (1991); Smith, J. A., Rivier, J. E., Eds.; Escom: Leiden, The Netherlands, 1992; pp 52-53.
35. Edwards, J. W.; Fanger, B. O. Patent WO 1999, 16, 105.
36. Pietrzynski, G.; Rzeszotarska, B. Pol. J. Chem. 1995, 69, 1595-1614 and references therein.
37. Pieroni, O.; Fissi, A.; Merlino, S.; Ciardelli, F. Isr. J. Chem. 1976/1977, 15, 22-28.
38. Ciajolo, M. R.; Tuzi, A.; Pratesi, C. R.; Fissi, A.; Pieroni, O. Biopolymers 1990, 30, 911-920.
39. Inai, Y.; Ito, T.; Hirabayashi, T.; Yokota, K. Biopolymers 1993, 33, 1173-1184.
40. Nandel, F. S.; Malik, N.; Singh, B.; Jain, D. V. S. Int. J. Quant. Chem. 1999, 72, 15-23.
41. Baroda, M. A.; Rzeszotarska, B.; Smelka, L.; Pietrzynski, G. J. Pept. Res. 1998, 52, 72-79.
42. Chauhan, V. S.; Kaur, U.; Balaram, P. Biopolymers 1998, 28, 763-771.
43. Gupta, A.; Bharadwaj, A.; Chauhan, V. S. J. Chem. Soc., Perkin. Trans. 1990, 2, 1911-1916.
44. Pieroni, O.; Fissi, A.; Pratesi, C. R.; Temussi, P. A.; Ciardelli, F. J. Am. Chem. Soc. 1991, 113, 6338-6340.
45. Nandel, F. S.; Kaur, H.; Malik, N.; Shankar, N.; Jain, D. V. S. Indian J. Biochem. Biophys. 2001, 38, 417-425.
46. Nandel, F. S.; Kaur, H. Indian J. Biochem. Biophys. 2003, 40, 265-273.
47. Nandel, F. S.; Khare, B. Biopolymers 2005, 77, 63-73.
48. Wildman, K. A. H.; Ramamoorthy, A.; Wakamiya, T.; Yoshikawa, T.; Crisma, M.; Toniolo, C.; Formaggio, F. J. Pept. Res. 2004; in press.
49. Wildman, K. A. H.; Lee, D. K.; Ramamoorthy, A. Biopolymers 2002, 64, 246-254.
50. Crisma, M.; Formaggio, F.; Toniolo, C.; Yoshikawa, T.; Wakamiya, T. J. Am. Chem. Soc. 1999, 121, 3272-3278.
51. Vinter, J. G.; Davis, A.; Suanders, M. R. J. Comput. Aid. Mol. Des. 1987, 1, 31.
52. Vertuani, G.; Falcomer, C.; Boggian, M.; Pochetti, G.; Cerrini, S.; Ricci, M.; Rossi, C.; Scatturin, A. Int. J. Pept. Protein Res. 1989, 33, 162-170.
53. Verdaguer, N.; Urpi, L.; Fita, I.; Subirana, J. A. Biopolymers 1988, 27, 1887-1896.
54. Bardi, R.; Piazzesi, A. M.; Toniolo, C.; Jensen, O. E.; Omar, R. S.; Senning, A. Biopolymers 1998, 27, 747.
55. Pullman, B.; Pullman, A. Adv. Protein Chem. 1974, 28, 347-526.
56. Lawrence, R. P.; Thompson, C. W. C. Theochem 1982, 5, 37.
57. Aleman, C.; Casanovas, J. J. Chem. Soc., Perkins Trans. 1994, 2, 563-568.
58. Aleman, C.; Casanovas, J. Biopolymers 1995, 36, 71-82.
59. Weiner, S. J.; Singh, U. C.; O' Donell, T. J.; Kollman, P. A. J. Am. Chem. Soc. 1984, 106, 6243-6245.
60. Mohle, K.; Hoffman, H. J. J. Pept. Res. 1998, 51, 19-28.
61. Adzubei, A. A.; Eisenmenger, F.; Tumanyan, V. G.; Zinke, M.; Esipova, N. G. Biophys. Biochem. Res. Commun. 1987, 146, 934-938.
62. Adzubei, A. A.; Eisenmenger, F.; Tumanyan, V. G.; Zinke, M.; Brodzinski, S.; Esipova, N. G. J. Biomol. Struct. 1987, 5, 689-704.
63. Adzubei, A. A.; Sternberg, J. E. J. Mol. Biol. 1993, 229, 472-493.
64. Pincus, M. R.; Klausner, R. D.; Scheraga, H. A. Proc Natl. Sci. U.S.A. 1982, 79, 5107-5110.
65. Rigoutsos, I.; Riek, P.; Graham, R. M.; Novotny, J. Nucleic Acids Res. 2003, 31, 4625-4631.
66. Katz, E.; Demain, A. L. Bacteriol. Rev. 1977, 41, 449-474.
67. Sarges, R.; Witkop, B. J. Am. Chem. Soc. 1965, 87, 2011-2020.
68. Sarges, R.; Witkop, B. J. Am. Chem. Soc. 1965, 87, 2020-2027.
69. Singh, B. Conformational Studies of Some Membrane Active Peptides. Ph.D. Thesis, Panjab University, Chandigarh, India, 1998.
70. Shankar, N. Designing of Peptide Channels by Incorporating D-Amino Acids. M.Sc. Thesis. Panjab University, Chandigarh, India, 2000.
71. Wildman, K. A. H.; Wilson, E. E.; Lee, D. K.; Ramamoorthy, A. Solid State Nucl. Magn. Reson. 2003, 24, 94-109.
72. Head-Gordan, T.; Head-Gordan, M.; Frisch, M. J.; Brooks, C. L., III; Pople, J. A. J. Am. Chem. Soc. 1991, 113, 5989-5997.
73. Maccallum, P. H.; Poet, R.; Milner-White, E. J. J. Mol. Biol. 1995, 48, 361-373.
74. Maccallum, P. H.; Poet, R.; Milner-White, E. J. J. Mol. Biol. 1995, 248, 374-384.
75. Deane, C. M.; Allen, F. H.; Taylor, R.; Blundell, T. L. Protein Eng. 2000, 13, 1025-1028.
76. Nandel, F. S.; Ahluwalia, A.; Kaur, A. Int. J. Quant. Chem. 1995, 55, 61-69.
77. Nandel, F. S.; Verma, R.; Singh, B.; Jain, D. V. S. Pure Appl. Chem. 1998, 70, 659-664.
78. Park, J.; Teichmann, S. A.; Hubbard, T.; Chothia, C. J. Mol. Biol. 1997, 273, 349-354.
79. Schilick, T. S. Molecular Modelling and Simulations: An Interdisciplinary Guide; Springer-Verlag: New York, 2002; pp 87-88.
80. Lee, D. K.; Ramamoorthy, A. J. Phys. Chem. 1999, 103, 271-275.
81. Ramamoorthy, A.; Kandasamy, S. K.; Lee, D. K.; Kidambi, S.; Larson, R. G. Biochemistry 2007, 46, 965-975.