Protégé: A tool for managing and using terminology in radiology applications

Journal of Digital Imaging

Volumn 20, Issue SUPPL. 1, 2007, Pages 34-46

  Rubin, Daniel L ^a,b   Noy, Natalya F ^a   Musen, Mark A ^a  

^a STANFORD UNIVERSITY   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Ontologies; RadLex; Software tools; Terminologies; Vocabulaires

Indexed keywords

TEXT MINING;

DATA MINING; GRAPHICAL USER INTERFACES; ONTOLOGY; RADIOLOGY; TERMINOLOGY; VISUALIZATION;

COMPUTER AIDED SOFTWARE ENGINEERING;

ARTICLE; COMPUTER PROGRAM; LINGUISTICS; MEDICAL TECHNOLOGY; NOMENCLATURE; PRIORITY JOURNAL; RADIOLOGY DEPARTMENT;

COMPUTER GRAPHICS; COMPUTER SYSTEMS; DATABASE MANAGEMENT SYSTEMS; FEEDBACK; HUMANS; INFORMATION STORAGE AND RETRIEVAL; KNOWLEDGE BASES; RADIOLOGY INFORMATION SYSTEMS; SOFTWARE; SOFTWARE DESIGN; SYSTEMS INTEGRATION; TERMINOLOGY AS TOPIC; USER-COMPUTER INTERFACE;

EID: 35448966196     PISSN: 08971889     EISSN: 1618727X     Source Type: Journal    
DOI: 10.1007/s10278-007-9065-0     Document Type: Article

References (17)

1. Ashburner M, et al: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25:25-29, 2000
2. Whetzel PL, et al: The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22:866-873, 2006
3. Rosse C, Mejino JL Jr,: A reference ontology for biomedical informatics: The Foundational Model of Anatomy. J Biomed Inform 36:478-500, 2003
4. Sioutos N, de Coronado S, Haber MW, Hartel FW, Shaiu WL, Wright LW: NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information. J Biomed Inform 40:30-43, 2007
5. de Keizer NF, Abu-Hanna A, Cornet R, Zwetsloot-Schonk JH, Stoutenbeek CP: Analysis and design of an ontology for intensive care diagnoses. Methods Inf Med 38:102-112, 1999
6. Langlotz CP: RadLex: a new method for indexing online educational materials. Radiographics 26:1595-1597, 2006
7. Gennari JH, et al: The evolution of Protege: an environment for knowledge-based systems development. Int J Hum Comput Stud 58:89-123, 2003
8. Hoffman M, Arnoldi C, Chuang I: The clinical bioinformatics ontology: a curated semantic network utilizing RefSeq information. Pac Symp Biocomput:139-150, 2005
9. Noy NF, Fergerson RW, Musen MA: The knowledge model of Protege-2000: Combining interoperability and flexibility. Lect Notes Artif Int 1937:17-32, 2000
10. Noy NF, McGuinness DL: Ontology Development 101: A Guide to Creating Your First Ontology. Stanford Knowledge Systems Laboratory Technical Report KSL-01-05 and Stanford Medical Informatics Technical Report SMI-2001-0880, 2001
11. Noy NF, Kunnatur S, Klein M, Musen MA: Tracking changes during ontology evolution. Semantic Web-Iswc 2004, Proceedings 3298:259-273, 2004
12. Noy NF, Musen MA: The PROMPT suite: interactive tools for ontology merging and mapping. Int J Hum Comput Stud 59:983-1024, 2003
13. Ellson J, Gansner E, Koutsofios L, North SC, Woodhull G: Graphviz-Open source graph drawing tools. Graph Draw 2265:483-484, 2002
14. Alani H: TGVizTab: An Ontology Visualisation Extension for Protégé. Proc. Proceedings of Workshop on Semantic Authoring, Annotation & Knowledge Markup (SAAKM'02), the 15th European Conference on Artificial Intelligence, (ECAI'02): Lyon City
15. Tudorache T, Noy NF: Collaborative Protégé. Proc. Workshop on Social and Collaborative Construction of Structured Knowledge: Banff City
16. Sobel JL, et al: Information content and clarity of radiologists' reports for chest radiography. Acad Radiol 3:709-717, 1996
17. Kahn CE Jr, Channin DS, Rubin DL: An ontology for PACS integration. J Digit Imaging 19:316-327, 2006