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Volumn 69, Issue 3, 2007, Pages 665-671

The crystal structure of XC1258 from Xanthomonas campestris: A putative procaryotic Nit protein with an arsenic adduct in the active site

Author keywords

Arsenic adduct; Nitrilase; Plant pathogen; X ray diffraction; Xanthomonas campestris

Indexed keywords

BACTERIAL PROTEIN; NITRILASE; PROTEIN NIT; PROTEIN XC1258; UNCLASSIFIED DRUG;

EID: 35448960463     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21501     Document Type: Article
Times cited : (14)

References (28)
  • 1
    • 0035114118 scopus 로고    scopus 로고
    • Pace HC, Brenner C. The nitrilase superfamily: classification, structure, and function. Genome Biol 2001;2: reviews 0.1-0.9.
    • Pace HC, Brenner C. The nitrilase superfamily: classification, structure, and function. Genome Biol 2001;2: reviews 0.1-0.9.
  • 2
    • 0027941103 scopus 로고
    • A new family of carbon-nitrogen hydrolases
    • Bork P, Koonin EV. A new family of carbon-nitrogen hydrolases. Protein Sci 1994;3:1344-1346.
    • (1994) Protein Sci , vol.3 , pp. 1344-1346
    • Bork, P.1    Koonin, E.V.2
  • 3
    • 0031570299 scopus 로고    scopus 로고
    • Crystal structure of nitrile hydratase reveals a novel iron center in a novel fold
    • Huang W, Jia J, Cummings J, Nelson M, Schneider G, Lindqvist Y. Crystal structure of nitrile hydratase reveals a novel iron center in a novel fold. Structure 1997;5:691-699.
    • (1997) Structure , vol.5 , pp. 691-699
    • Huang, W.1    Jia, J.2    Cummings, J.3    Nelson, M.4    Schneider, G.5    Lindqvist, Y.6
  • 7
    • 0035895433 scopus 로고    scopus 로고
    • Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft
    • Wang W-C, Hsu W-H, Chien F-T, Chen C-Y. Crystal structure and site-directed mutagenesis studies of N-carbamoyl-D-amino-acid amidohydrolase from Agrobacterium radiobacter reveals a homotetramer and insight into a catalytic cleft. J Mol Biol 2001;306:251-261.
    • (2001) J Mol Biol , vol.306 , pp. 251-261
    • Wang, W.-C.1    Hsu, W.-H.2    Chien, F.-T.3    Chen, C.-Y.4
  • 9
    • 33749520438 scopus 로고    scopus 로고
    • The cloning, crystallization, and preliminary X-ray studies of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris
    • Tsai Y-D, Chin K-H, Shr H-L, Gao FP, Lyu P-C, Wang AH-J, Chou S-H. The cloning, crystallization, and preliminary X-ray studies of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris. Acta Crystallogr F 2006;62:999-1002.
    • Acta Crystallogr , vol.F 2006 , Issue.62 , pp. 999-1002
    • Tsai, Y.-D.1    Chin, K.-H.2    Shr, H.-L.3    Gao, F.P.4    Lyu, P.-C.5    Wang, A.H.-J.6    Chou, S.-H.7
  • 10
    • 0031059866 scopus 로고    scopus 로고
    • Processing of the X-ray diffraction data collected in oscillation mode
    • Otwinowski Z, Minor W. Processing of the X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 11
    • 0037237545 scopus 로고    scopus 로고
    • Automated main-chain model-building by template-matching and iterative fragment extension
    • Terwilliger TC. Automated main-chain model-building by template-matching and iterative fragment extension. Acta Crystallogr D 2002; 59:34-44.
    • (2002) Acta Crystallogr D , vol.59 , pp. 34-44
    • Terwilliger, T.C.1
  • 12
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard. M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 1991;47 (Part 2):110-119.
    • (1991) Acta Crystallogr A , vol.47 , Issue.PART 2 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 13
    • 0032790081 scopus 로고    scopus 로고
    • McRee DE. XtalView/Xfit - a versatile program for manipulating atomic coordinates and electron density. J Struct Biol 1999;125: 156-165.
    • McRee DE. XtalView/Xfit - a versatile program for manipulating atomic coordinates and electron density. J Struct Biol 1999;125: 156-165.
  • 14
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project N
    • Collaborative Computational Project N. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D 1994;50:760-763.
    • (1994) Acta Crystallogr D , vol.50 , pp. 760-763
  • 15
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex N, Peitsch MC. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997;18:2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 16
    • 0030874881 scopus 로고    scopus 로고
    • Lipases and α/β hydrolase fold
    • Rubin B, Dennis EA, editors, New York: Academic Press;
    • Schrag JD, Cygler M. Lipases and α/β hydrolase fold. In: Rubin B, Dennis EA, editors. Method enzymol, Vol. 284. New York: Academic Press; 1997. pp 85-107.
    • (1997) Method enzymol , vol.284 , pp. 85-107
    • Schrag, J.D.1    Cygler, M.2
  • 17
    • 33745176548 scopus 로고    scopus 로고
    • Crystal structure of XC6422 from Xanthomonas campestris: A putative acyl-peptide hydrolase/esterase adopting the α/β hydrolase fold
    • Yang C-Y, Chin K-H, Chou C-C, Wang AH-J, Chou S-H. Crystal structure of XC6422 from Xanthomonas campestris: a putative acyl-peptide hydrolase/esterase adopting the α/β hydrolase fold. Acta Crystallogr F 2006;62:498-503.
    • Acta Crystallogr , vol.F 2006 , Issue.62 , pp. 498-503
    • Yang, C.-Y.1    Chin, K.-H.2    Chou, C.-C.3    Wang, A.H.-J.4    Chou, S.-H.5
  • 18
    • 0000007711 scopus 로고
    • The crystal structure of the arsenate complex of dithiothreitol
    • Cruse WBT, James MNG. The crystal structure of the arsenate complex of dithiothreitol. Acta Crystallogr B 1972;28:1325-1331.
    • (1972) Acta Crystallogr B , vol.28 , pp. 1325-1331
    • Cruse, W.B.T.1    James, M.N.G.2
  • 19
    • 0035190119 scopus 로고    scopus 로고
    • Insights into the structure, solvation, and mechanism of ArsC arsenate reductase, a novel arsenic detoxification enzyme
    • Martin P, DeMel S, Shi J, Gladysheva T, Gatti DL, Rosen BP, Edwards BFP. Insights into the structure, solvation, and mechanism of ArsC arsenate reductase, a novel arsenic detoxification enzyme. Structure 2001;9:1071-1081.
    • (2001) Structure , vol.9 , pp. 1071-1081
    • Martin, P.1    DeMel, S.2    Shi, J.3    Gladysheva, T.4    Gatti, D.L.5    Rosen, B.P.6    Edwards, B.F.P.7
  • 20
    • 0037449721 scopus 로고    scopus 로고
    • Observation of an arsenic adduct in an acetyl esterase crystal structure
    • Zhu X, Larsen NA, Barsran A, Bruce NC, Wilson IA. Observation of an arsenic adduct in an acetyl esterase crystal structure. J Biol Chem 2003;278:2008-2014.
    • (2003) J Biol Chem , vol.278 , pp. 2008-2014
    • Zhu, X.1    Larsen, N.A.2    Barsran, A.3    Bruce, N.C.4    Wilson, I.A.5
  • 23
    • 0032436501 scopus 로고    scopus 로고
    • CH/π interactions in the crystal structure of class I MHC antigens and their complexes with peptides
    • Umezawa Y, Nishio M. CH/π interactions in the crystal structure of class I MHC antigens and their complexes with peptides. Bioorg Med Chem 1998;6:2507-2515.
    • (1998) Bioorg Med Chem , vol.6 , pp. 2507-2515
    • Umezawa, Y.1    Nishio, M.2
  • 25
    • 0035910278 scopus 로고    scopus 로고
    • Hydrogen bonds with π-acceptors in proteins: Frequencies and role in stabilizing local 3D structures
    • Steiner T, Koellner G. Hydrogen bonds with π-acceptors in proteins: frequencies and role in stabilizing local 3D structures. J Mol Biol 2001;305:535-557.
    • (2001) J Mol Biol , vol.305 , pp. 535-557
    • Steiner, T.1    Koellner, G.2
  • 26
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel E, Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D 2004;60:2256-2268.
    • (2004) Acta Crystallogr D , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 27
    • 0028871926 scopus 로고
    • Dali: A network tool for protein structure comparison
    • Holm L, Sander C. Dali: a network tool for protein structure comparison. Trends Biochem Sci 1995;20:478-480.
    • (1995) Trends Biochem Sci , vol.20 , pp. 478-480
    • Holm, L.1    Sander, C.2
  • 28
    • 33746218852 scopus 로고    scopus 로고
    • MUSTANG: A multiple structural alignment algorithm. Proteins: Struct Funct
    • Knonagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM. MUSTANG: a multiple structural alignment algorithm. Proteins: Struct Funct Bioinform 2006;64:559-574.
    • (2006) Bioinform , vol.64 , pp. 559-574
    • Knonagurthu, A.S.1    Whisstock, J.C.2    Stuckey, P.J.3    Lesk, A.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.