Comparative integromics on JMJD2A, JMJD2B and JMJD2C: Preferential expression of JMJD2C in undifferentiated ES cells

International Journal of Molecular Medicine

Volumn 20, Issue 2, 2007, Pages 269-273

  Katoh, Yuriko ^a   Katoh, Masaru ^b  

^a M&M Medical BioInformatics   (Japan)

^b NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

Author keywords

Blastocyst; Embryonic stem cells; Epigenetics; Histone demethylase; JmjC domain; NANOG; Primitive ectoderm; Reprogramming

Indexed keywords

JMJD2A PROTEIN, HUMAN; JMJD2B PROTEIN, HUMAN; JMJD2C PROTEIN, HUMAN; N DEMETHYLASE; TRANSCRIPTION FACTOR; TUMOR PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BIOLOGY; CELL DIFFERENTIATION; COMPARATIVE STUDY; CYTOLOGY; EMBRYO DEVELOPMENT; EMBRYONIC STEM CELL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GENOMICS; HUMAN; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEOMICS; SEQUENCE HOMOLOGY;

BASE SEQUENCE; CELL DIFFERENTIATION; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; EMBRYONIC DEVELOPMENT; EMBRYONIC STEM CELLS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENOMICS; HUMANS; MOLECULAR SEQUENCE DATA; NEOPLASM PROTEINS; OXIDOREDUCTASES, N-DEMETHYLATING; PHYLOGENY; PROTEOMICS; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION FACTORS;

EID: 35448934125     PISSN: 11073756     EISSN: 1791244X     Source Type: Journal    
DOI: 10.3892/ijmm.20.2.269     Document Type: Article

References (20)

1. Surani MA, Hayashi K and Hajkova P: Genetic and epigenetic regulators of pluripotency. Cell 128: 747-762, 2007.
2. Kouzarides T: Chromatin modifications and their function. Cell 128: 693-705, 2007.
3. Jenuwein T and Allis CD: Translating the histone code. Science 293: 1074-1080, 2001.
4. Bird A: DNA methylation patterns and epigenetic memory. Genes Dev 16: 6-21, 2002.
5. Turner BM: Defining an epigenetic code. Nat Cell Biol 9: 1-5, 2007.
6. Takeuchi T, Yamazaki Y, Katoh-Fukui Y, et al: Gene trap capture of a novel mouse gene, Jumonji, required for neural tube formation. Genes Dev 9: 1211-1222, 1995.
7. Takeuchi T, Watanabe Y, Takano-Shimizu T and Kondo S: Roles of Jumonji and Jumonji family genes in chromatin regulation and development. Dev Dyn 235: 2449-2459, 2006.
8. Katoh M and Katoh M: Identification and characterization of TRIP8 gene in silico. Int J Mol Med 12: 817-821, 2003.
9. Hoog C, Schalling M, Grunder-Brundell E and Daneholt B: Analysis of murine male germ cell-specific transcript that encodes a putative zinc finger protein. Mol Reprod Dev 30: 173-181, 1991.
10. Hu Z, Gomes I, Horrigan SK, et al: A novel nuclear protein, 5qNCA (LOC51780) is a candidate for the myeloid leukemia tumor suppressor gene on chromosome 5 band q31. Oncogene 20: 6946-6954, 2001.
11. Yamane K, Toumazou C, Tsukada Y, et al: JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor. Cell 125: 483-495, 2006.
12. Katoh M and Katoh M: Identification and characterization of JMJD2 family genes in silico. Int J Oncol 24: 1623-1628, 2004.
13. Chen Z, Zang J, Whetstine J, et al: Structural insights into histone demethylation by JMJD2 family members. Cell 125: 691-702, 2006.
14. Cloos PAC, Christensen J, Agger K, et al: The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3. Nature 442: 307-311, 2006.
15. Katoh M: Paradigm shift in gene-finding method: from bench-top approach to desk-top approach. Int J Mol Med 10: 677-682, 2002.
16. Katoh M and Katoh M: Comparative genomics on mammalian FGF3-FGF4 locus. Int J Oncol 27: 281-285, 2005.
17. Katoh Y and Katoh M: WNT antagonist, SFRP1, is Hedgehog signaling target. Int J Mol Med 17: 171-175, 2006.
18. Katoh M and Katoh M: CER1 is a common target of WNT and NODAL signaling pathways in human embryonic stem cells. Int J Mol Med 17: 795-799, 2006.
19. Katoh Y and Katoh M: Conserved POU-binding site linked to SP1-binding site within FZD5 promoter: transcriptional mechanisms of FZD5 in undifferentiated human ES cells, fetal liver/spleen, adult colon, pancreatic islet, and diffuse-type gastric cancer. Int J Oncol 30: 751-755, 2007.
20. Katoh M and Katoh M: Comparative integromics on FZD7 orthologs: conserved binding sites for PU.1, SP1, CCAAT-box and TCF/LEF/SOX transcription factors within 5′-promoter region of mammalian FZD7 orthologs. Int J Mol Med 19: 529-533, 2007.