Towards developing a protein infrared spectra databank (PISD) for proteomics research

Proteomics

Volumn 4, Issue 8, 2004, Pages 2310-2319

  Hering, Joachim A ^a   Innocent, Peter R ^b   Haris, Parvez I ^a,b  

^a Leicester School of Pharmacy   (United Kingdom)

^b DE MONTFORT UNIVERSITY   (United Kingdom)

Author keywords

Fourier transform infrared spectroscopy; Neural networks; Protein infrared spectra databank

Indexed keywords

ACCURACY; AQUEOUS SOLUTION; CONFERENCE PAPER; INFORMATION PROCESSING; INFRARED SPECTROSCOPY; LABORATORY; PATTERN RECOGNITION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATA BANK; PROTEIN INFRARED SPECTRA DATABANK; PROTEIN SECONDARY STRUCTURE; PROTEIN VARIANT; PROTEOMICS; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; DATABASES, FACTUAL; HUMANS; NEURAL NETWORKS (COMPUTER); PROTEIN STRUCTURE, SECONDARY; PROTEINS; PROTEOMICS; REFERENCE STANDARDS; SOFTWARE; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STATISTICS;

EID: 3543138406     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300808     Document Type: Conference Paper

References (44)

1. Pennington, S. R., Dunn, M. J., Proteomics from Protein Sequence to Function, BIOS Scientific Publishers Limited, Oxford 2001.
2. Haris, P. I., Chapman, D., Biopolymers 1995, 37, 251-263.
3. Kukol, A., Torres, J., Arkin, I. T., J. Mol. Biol. 2002, 320, 1109-1117.
4. Lee, D. C., Haris, P. I., Chapman, D., Mitchell, R. C., Biochemistry 1990, 29, 9185-9193.
5. Ruegg, M., Metzger, V., Susi, H., Biopolymers 1975, 14, 1465-1471.
6. Kauppinen, J. K., Moffatt, D. J., Mantsch, H. H., Cameron, D. G., Anal. Chem. 1981, 53, 1454-1457.
7. Kauppinen, J. K., Moffatt, D. J., Mantsch, H. H., Cameron, D. G., Appl. Spectrosc. 1981, 35, 271-276.
8. Cameron, D. G., Moffatt, D. J., J. Testing Evaluation 1984, 12, 78-85.
9. Byler, D. M., Susi, H., Biopolymers 1986, 25, 469-487.
10. Susi, H., Byler, D. M., Methods Enzymol. 1986, 130, 290-311.
11. Griffiths, P. R., Pariente, G. L., Trends Anal. Chem. 1986, 5, 209-215.
12. Cameron, D. G., Moffatt, D. J., Appl. Spectross. 1987, 41, 539-544.
13. Surewicz, W. K., Mantsch, H. H., Biochim. Biophys. Acta 1988, 952, 115-130.
14. Villalain, J., Gomez-Fernandez, J. C., Jackson, M., Chapman, D., Biochim. Biophys. Acta 1989, 978, 305-312.
15. Goormaghtigh, E., Cabiaux, V., Ruysschaert, J. M., Eur. J. Biochem. 1990, 193, 409-420.
16. Dousseau, F., Pezolet, M., Biochemistry 1990, 29, 8771-8779.
17. Dong, A., Huang, P., Caughey, W. S., Biochemistry 1990, 29, 3303-3308.
18. Singh, B. R., Fuller, M. P., DasGupta, B. R., J. Prot. Chem. 1991, 10, 637-649.
19. Sarver, R. W., Krueger, W. C., Anal. Biochem. 1991, 194, 89-100.
20. Singh, B. R., DeOliveira, D. B., Fu, F., Fuller, M. P., in: Nafie, L. A., Mantsch, H. H. (Eds.), Biomolecular Spectroscopy III, SPIE, Los Angeles 1993, pp. 47-55.
21. Mantsch, H. H., Moffatt, D. J., in: Fausto, R. (Ed.), NATO ASI Series, Mathematical and Physical Sciences, USA Kluwer Academic Publishers, Norwell, MA 1993, pp. 113-124.
22. Pribic, R., Van Stokkum, I. H. M., Chapman, D., Haris, P. I., Bloemendal, M., Anal. Biochem. 1993, 214, 366-378.
23. Kumosinski, T. F., Unruh, J. J., in: Kumosinski, T. F., Liebman, M. N. (Eds.), Molecular Modeling - From Virtual Tools to Real Problems, American Chemical Society, Washington, DC 1994, pp. 71-98.
24. Baumruk, V., Pancoska, P., Keiderling, T. A., J. Mol. Biol. 1996, 259, 774-791.
25. Rahmelow, K., Huebner, W., Anal. Biochem. 1996, 241, 5-13.
26. Cabiaux V., Oberg K. A., Pancoska P., Walz T., Agre P. et al., Biophys. J. 1997, 73, 406-417.
27. Wi, S., Pancoska, P., Keiderling, T. A., Biospectroscopy 1997, 4, 93-106.
28. Singh, B. R., in: Singh, B. R. (Ed.), ACS Symposium Series, American Chemical Society, Washington, DC 2000, pp. 2-37.
29. Baello, B. I., Pancoska, P., and Keiderling, T. A., Anal. Biochem. 2000, 280, 46-57.
30. Severcan, M., Severcan, F., Haris, P. I., J. Mol. Structure 2001, 565, 383-387.
31. Hering, J. A., Innocent, P. R., Haris, P. I., in: Palagi, P. M., Sanchez, J.-C., Stöcklin, R. (Eds.), 2001 Congress Functional Proteomics, Fontis Media, Geneva 2001, pp. 128-132.
32. Smith, B. M., Oswald, L., Franzen, S., Anal. Chem. 2002, 74, 3386-3391.
33. Hering, J. A., Innocent, P. R., Haris, P. I., Proteomics 2002, 2, 839-849.
34. Hering, J. A., Innocent, P. R., Haris, P. I., Spectroscopy 2002, 16, 53-69.
35. Hering, J. A., Innocent, P. R., Haris, P. I., in: Palagi, P. M., Quadroni, M., Rossier, J. S., Sanchez, J.-C., Stöcklin, R. (Eds.), 2002 Congress Applied Proteomics, Fontis Media, Lausanne 2002, pp. 163-165.
36. Hering, J. A., Innocent, P. R., Haris, P. I., Proteomics 2003, 3, 1464-1475.
37. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N. et al., Nucleic Acids Res. 2000, 28, 235-242.
38. Kabsch, W., Sander, C., Biopolymers 1983, 22, 2577-2637.
39. Dong, A., Protein Infrared Database, Accessed: 25.10.2002, URL: http://www.unco.edu/chemist/aichun/irdata.htm.
40. Keiderling, T. A., The Keiderling Group - Download Page, Accessed: 25.10.2002, URL: http://www.uic.edu/labs/ takgroup/FARMR/farmr.html.
41. Hecht-Nielsen, R., Neurocomputing, Addison Wesley, Reading, MA 1990.
42. Pancoska, P., Janota, V., Keiderling, T. A., Appl. Spectrosc. 1996, 50, 658-668.
43. Riedmiller, M., Braun, H., in: Ruspini, H. (Ed.), IEEE International Conference on Neural Networks (ICNN-93), IEEE, San Francisco, CA 1993, pp. 586-591.
44. Riedmiller, M., International Journal of Computer Standards and Interfaces, Special Issue on Neural Networks, 1994, 5, 8.