Microsatellite DNA variation reveals high gene flow and panmictic populations in the Adriatic shared stocks of the European squid and cuttlefish (Cephalopoda)

Heredity

Volumn 93, Issue 2, 2004, Pages 166-174

  Garoia, F ^a   Guarniero, I ^a   Ramsak A ^b   Ungaro, N ^c   Landi, M ^a   Piccinetti, C ^a   Mannini, P ^d   Tinti, F ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b NATIONAL INSTITUTE OF BIOLOGY   (Slovenia)

^c Marine Biology Laboratory   (Italy)

^d FAO AdriaMed   (Italy)

Author keywords

Adriatic sea; Genetic diversity; Genetic structure; Loligo vulgaris; Microsatellites; Sepia officinalis

Indexed keywords

MICROSATELLITE DNA; PRIMER DNA;

CEPHALOPOD FISHERY; FISHERY MANAGEMENT; GENE FLOW; GENETIC VARIATION; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CEPHALOPOD; COMPARATIVE STUDY; FOOD INDUSTRY; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; MEDITERRANEAN SEA; MOLLUSC; POPULATION GENETICS; REPRODUCTION;

ANIMALS; DECAPODIFORMES; DNA PRIMERS; FISHERIES; GENE FREQUENCY; GENETICS, POPULATION; MEDITERRANEAN SEA; MICROSATELLITE REPEATS; MOLLUSCA; REPRODUCTION; VARIATION (GENETICS);

ADRIATIC SEA; MEDITERRANEAN SEA;

CEPHALOPODA; INVERTEBRATA; LOLIGO; LOLIGO VULGARIS; SEPIA; SEPIA OFFICINALIS; SEPIIDAE; TRANSPOSONS;

EID: 3543095174     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800489     Document Type: Article

References (35)

1. Adcock GJ, Carvalho GR, Rodhouse PG, Shaw PW (1999). Microsatellite analysis of genetic diversity in the squid Illex argentinus during a period of intensive fishing. Mar Ecol Prog Ser 187: 171-178.
2. AdriaMed (2000) Priority topics related to shared demersal fishery resources of the Adriatic Sea. Report of the First Meeting of the AdriaMed Working Group on Shared Demersal Resources. GCP/RER/010/ITA-02, pp 1-21. Rome: FAO-MiPAF Scientific Cooperation to Support Responsible Fisheries in the Adriatic Sea, http://www.faoadriamed.org/html/ av_doc1.asp?id=7.
3. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (1996). GENETIX 4.04, logiciel sous Windows TM pour la génétique des populations Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
4. Brookfield JF (1996). A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol 5: 453-455.
5. Carvalho GR, Hauser L (1998). Advances in the molecular analysis of fish population structure. Ital J Zool 65(Suppl 1): 21-33.
6. Carvalho GR, Thompson A, Stoner AL (1992). Genetic diversity and population differentiation of the shortfin squid Illex argentinus in the south-west Atlantic. J Exp Mar Biol Ecol 158: 105-121.
7. FAO (1997) In: Review of the State of the World Fishery Resources: Marine Fisheries Food and Agriculture Organization, Rome, FAO Fisheries Circular 920 FIRM/C920.
8. Gaggiotti OE, Lange O, Rassmann K, Gliddon C (1999). A comparison of two indirect methods for estimating average levels of gene flow using microsatellite data. Mol Ecol 8: 1513-1520.
9. Goodman SJ (1997). RST CALC: a collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and a determining their significance. Mol Ecol 6: 881-885.
10. Goudet J (1995). Fstat version 1.2. A computer program to calculate F-statistics. J Hered 86: 485-486.
11. Guarniero I, Garoia F, di Placido R, Ramsak A, Mannini P, Tinti F (2003). Species-specific microsatellite loci for the European squid (Loligo vulgaris). Mol Ecol Notes 3: 312-313.
12. Hardy OJ, Charbonnel N, Freville H, Heuertz M (2003). Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics 163: 1467-1482.
13. Hardy OJ, Vekemans X (2002). SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol Ecol Notes 2: 618-620.
14. Hauser L, Adcock GJ, Smith PJ, Bernal Ramirez J, Carvalho GR (2002). Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper. Proc Natl Acad Sci USA 99: 11742-11747.
15. Hixon RF (1983). Loligo opalescens. In: Boyle PR (ed) Cephalopod Life Cycles, Vol 1: Species Accounts. Academic Press: London, pp 95-114.
16. Kimura M, Crow JF (1964). The number of alleles that can be maintained in a finite population. Genetics 8: 725-738.
17. Kimura M, Ohta T (1978). Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc Natl Acad Sci USA 75: 2868-2872.
18. Lundy CJ, Rico C, Hewitt GM (2000). Temporal and spatial genetic variation in spawning grounds of European hake (Merluccius merluccius) in the Bay of Biscay. Mol Ecol 9: 2067-2079.
19. Miller SA, Dykes DD, Polesky HF (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16: 1215.
20. Mills LS, Allendorf FW (1996). The one-migrant-per-generation rule in conservation and management. Conserv Biol 10: 1509-1518.
21. O'Connell M, Wright JM (1997). Microsatellite DNA in fishes. Rev Fish Biol Fish 7: 331-363.
22. Pérez-Losada M, Guerra A, Carvalho GR, Sanjuan A, Shaw PW (2002). Extensive population subdivision of the cuttlefish Sepia officinalis (Mollusca: Cephalopoda) around the Iberian Peninsula indicated by microsatellite DNA variation. Heredity 89: 417-424.
23. Raymond M, Rousset F (1995). Genepop (Version 1.2.): population genetics software for exact tests and ecumenicism. J Hered 86: 248-249.
24. Reichow D, Smith MJ (2001). Microsatellites reveal high levels of gene flow among populations of the California squid Loligo opalescens. Mol Ecol 10: 1101-1109.
25. Relini G, Bertrand J, Zamboni A (eds) (1999). Synthesis of the knowledge on bottom fishery resources in central Mediterranean (Italy and Corsica). Biol Mar Mediterranen 6(Suppl 1): 1-868.
26. Rice WR (1989). Analyzing tables of statistical tests. Evolution 43: 223-225.
27. Ruzzante DE, Taggart CT, Cook D (1998). A nuclear DNA basis for shelf- and bank-scale population structure in northwest Atlantic cod (Gadus morhua): Labrador to Georges Bank. Mol Ecol 7: 1663-1680.
28. Shaw PW, Pérez-Losada M (2000). Polymorphic microsatellites in the common cuttlefish Sepia officinalis (Cephalopoda). Mol Ecol 9: 237-238.
29. Shaw PW, Pierce GJ, Boyle PR (1999). Subtle population structuring within a highly vagile marine invertebrate, the veined squid Loligo forbesi, demonstrated with microsatellite DNA markers. Mol Ecol 8: 407-417.
30. Slatkin M (1985). Rare alleles as indicators of gene flow. Evolution 39: 53-65.
31. Slatkin M, Barton NH (1989). A comparison of three indirect methods for estimating average levels of gene flow. Evolution 43: 1349-1368.
32. Valsecchi E, Palsboll P, Hale P, Glockner-Ferrari D, Ferrari M, Clapham P et al (1997). Microsatellite genetic distances between oceanic populations of the humpback whale (Megaptera novaeangliae). Mol Biol Evol 14: 355-362.
33. Weir BS, Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
34. Wright S (1978). Evolution and Genetics of Populations: Variability Within and Among Natural Populations. Vol 4, University of Chicago press: Chicago.
35. Zane L, Ostellari L, Maccatrozzo L, Bargelloni L, Cuzin-Roudy J, Buchholz F, Patarnello T (2000). Genetic differentiation in a pelagic crustacean (Meganyctiphanes norvegica: Euphausiacea) from the North East Atlantic and the Mediterranean Sea. Mar Biol 136: 191-199.