-
1
-
-
0036971196
-
Crystallographic structure of the K intermediate of bacteriorhodopsin: Conservation of free energy after photoisomerization of the retinal
-
Schobert B., Cupp-Vickery J., Hornak V., Smith S., Lanyi J. Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal. J. Mol. Biol. 321:2002;715-726
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 715-726
-
-
Schobert, B.1
Cupp-Vickery, J.2
Hornak, V.3
Smith, S.4
Lanyi, J.5
-
2
-
-
0033536594
-
Structural changes in bacteriorhodopsin during ion transport at 2 Angstrom resolution
-
Luecke H., Schobert B., Richter H.T., Cartailler J.P., Lanyi J.K. Structural changes in bacteriorhodopsin during ion transport at 2 Angstrom resolution. Science. 286:1999;255-261
-
(1999)
Science
, vol.286
, pp. 255-261
-
-
Luecke, H.1
Schobert, B.2
Richter, H.T.3
Cartailler, J.P.4
Lanyi, J.K.5
-
3
-
-
0034725554
-
Coupling photoisomerization of the retinal in bacteriorhodopsin to directional transport
-
Luecke H., Schobert B., Richter H.T., Cartailler J.-P., Rosengarth A., Needleman R., Lanyi J.K. Coupling photoisomerization of the retinal in bacteriorhodopsin to directional transport. J. Mol. Biol. 300:2000;1237-1255
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1237-1255
-
-
Luecke, H.1
Schobert, B.2
Richter, H.T.3
Cartailler, J.-P.4
Rosengarth, A.5
Needleman, R.6
Lanyi, J.K.7
-
4
-
-
0038649076
-
Crystallographic structures of the M and N intermediates of bacteriorhodopsin: Assembly of a hydrogen-bonded chain of water molecules between Asp96 and the retinal Schiff base
-
Schobert B., Brown L.S., Lanyi J.K. Crystallographic structures of the M and N intermediates of bacteriorhodopsin: assembly of a hydrogen-bonded chain of water molecules between Asp96 and the retinal Schiff base. J. Mol. Biol. 330:2003;553-570
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 553-570
-
-
Schobert, B.1
Brown, L.S.2
Lanyi, J.K.3
-
5
-
-
0037466289
-
Mechanism of proton transport in bacteriorhodopsin from crystallographic structures of the K, L, M-1, M-2, and M-2′ intermediates of the photocycle
-
Lanyi J.K., Schobert B. Mechanism of proton transport in bacteriorhodopsin from crystallographic structures of the K, L, M-1, M-2, and M-2′ intermediates of the photocycle. J. Mol. Biol. 328:2003;439-450
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 439-450
-
-
Lanyi, J.K.1
Schobert, B.2
-
6
-
-
0034632821
-
Helix deformation is coupled to vectorial proton transport in the photocycle of bacteriorhodopsin
-
Royant A., Edman K., Ursby T., Pebay-Peyroula E., Landau E.M., Neutze R. Helix deformation is coupled to vectorial proton transport in the photocycle of bacteriorhodopsin. Nature. 406:2000;645-648
-
(2000)
Nature
, vol.406
, pp. 645-648
-
-
Royant, A.1
Edman, K.2
Ursby, T.3
Pebay-Peyroula, E.4
Landau, E.M.5
Neutze, R.6
-
7
-
-
0035201708
-
Structure of an early intermediate in the M-state phase of the bacteriorhodopsin photocycle
-
Facciotti M.T., Rouhani S., Burkard F.T., Betancourt F.M., Downing K.H., Rose R.B., McDermott G., Glaeser R.M. Structure of an early intermediate in the M-state phase of the bacteriorhodopsin photocycle. Biophys. J. 81:2001;3442-3455
-
(2001)
Biophys. J.
, vol.81
, pp. 3442-3455
-
-
Facciotti, M.T.1
Rouhani, S.2
Burkard, F.T.3
Betancourt, F.M.4
Downing, K.H.5
Rose, R.B.6
McDermott, G.7
Glaeser, R.M.8
-
8
-
-
0036452022
-
Specific damage induced by X-ray radiation and structural changes in the primary photoreaction of bacteriorhodopsin
-
Matsui Y., Sakai K., Murakami M., Shiro Y., Adachi S., Okumura H., Kouyama T. Specific damage induced by X-ray radiation and structural changes in the primary photoreaction of bacteriorhodopsin. J. Mol. Biol. 324:2002;469-481
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 469-481
-
-
Matsui, Y.1
Sakai, K.2
Murakami, M.3
Shiro, Y.4
Adachi, S.5
Okumura, H.6
Kouyama, T.7
-
9
-
-
0346366810
-
Crystal structure of the L intermediate of bacteriorhodopsin: Evidence for vertical translocation of a water molecule during the proton pumping cycle
-
Kouyama T., Nishikawa T., Tokuhisa T., Okumura H. Crystal structure of the L intermediate of bacteriorhodopsin: evidence for vertical translocation of a water molecule during the proton pumping cycle. J. Mol. Biol. 335:2004;531-546
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 531-546
-
-
Kouyama, T.1
Nishikawa, T.2
Tokuhisa, T.3
Okumura, H.4
-
10
-
-
0347717799
-
Deformation of helix C in the low temperature L-intermediate of bacteriorhodopsin
-
Edman K., Royant A., Larsson G., Jacobson F., Taylor T., Van Der S.D., Landau E.M., Pebay-Peyroula E., Neutze R. Deformation of helix C in the low temperature L-intermediate of bacteriorhodopsin. J. Biol. Chem. 279:2004;2147-2158
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 2147-2158
-
-
Edman, K.1
Royant, A.2
Larsson, G.3
Jacobson, F.4
Taylor, T.5
Van Der, S.D.6
Landau, E.M.7
Pebay-Peyroula, E.8
Neutze, R.9
-
11
-
-
0342646933
-
Structural alterations for proton translocation in the M state of wild-type Bacteriorhodopsin
-
Sass H.J., Buldt G., Gessenich R., Hehn D., Neff D., Schlesinger R., Berendzen J., Ormos P. Structural alterations for proton translocation in the M state of wild-type Bacteriorhodopsin. Nature. 406:2000;649-653
-
(2000)
Nature
, vol.406
, pp. 649-653
-
-
Sass, H.J.1
Buldt, G.2
Gessenich, R.3
Hehn, D.4
Neff, D.5
Schlesinger, R.6
Berendzen, J.7
Ormos, P.8
-
12
-
-
0033592726
-
High-resolution X-ray structure of an early intermediate in the bacteriorhodopsin photocycle
-
Edman K., Nollert P., Royant A., Belrhali H., Pebay-Peyroula E., Hajdu J., Neutze R., Landau E.M. High-resolution X-ray structure of an early intermediate in the bacteriorhodopsin photocycle. Nature. 401:1999;822-826
-
(1999)
Nature
, vol.401
, pp. 822-826
-
-
Edman, K.1
Nollert, P.2
Royant, A.3
Belrhali, H.4
Pebay-Peyroula, E.5
Hajdu, J.6
Neutze, R.7
Landau, E.M.8
-
13
-
-
0036968773
-
Crystallographic structure of the retinal and the protein after deprotonation of the Schiff base: The switch in the bacteriorhodopsin photocycle
-
Lanyi J.K., Schobert B. Crystallographic structure of the retinal and the protein after deprotonation of the Schiff base: the switch in the bacteriorhodopsin photocycle. J. Mol. Biol. 321:2002;727-737
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 727-737
-
-
Lanyi, J.K.1
Schobert, B.2
-
14
-
-
0346727449
-
Local-global conformational coupling in a heptahelical membrane protein: Transport mechanism from crystal structures of the nine states in the bacteriorhodopsin photocycle
-
Lanyi J.K., Schobert B. Local-global conformational coupling in a heptahelical membrane protein: transport mechanism from crystal structures of the nine states in the bacteriorhodopsin photocycle. Biochemistry. 43:2004;3-8
-
(2004)
Biochemistry
, vol.43
, pp. 3-8
-
-
Lanyi, J.K.1
Schobert, B.2
-
15
-
-
0032546920
-
Proton transfer pathways in bacteriorhodopsin at 2.3 Angstrom resolution
-
Luecke H., Richter H.T., Lanyi J.K. Proton transfer pathways in bacteriorhodopsin at 2.3 Angstrom resolution. Science. 280:1998;1934-1937
-
(1998)
Science
, vol.280
, pp. 1934-1937
-
-
Luecke, H.1
Richter, H.T.2
Lanyi, J.K.3
-
16
-
-
0033609904
-
Structure of bacteriorhodopsin at 1.55 a resolution
-
Luecke H., Schobert B., Richter H.T., Cartailler J.P., Lanyi J.K. Structure of bacteriorhodopsin at 1.55 A resolution. J. Mol. Biol. 291:1999;899-911
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.T.3
Cartailler, J.P.4
Lanyi, J.K.5
-
17
-
-
0033567092
-
Protein, lipid and water organization in bacteriorhodopsin crystals: A molecular view of the purple membrane at 1.9 resolution
-
Belrhali H., Nollert P., Royant A., Menzel C., Rosenbusch J.P., Landau E.M., Pebay-Peyroula E. Protein, lipid and water organization in bacteriorhodopsin crystals: a molecular view of the purple membrane at 1.9 resolution. Struct. Fold. Des. 7:1999;909-917
-
(1999)
Struct. Fold. Des.
, vol.7
, pp. 909-917
-
-
Belrhali, H.1
Nollert, P.2
Royant, A.3
Menzel, C.4
Rosenbusch, J.P.5
Landau, E.M.6
Pebay-Peyroula, E.7
-
18
-
-
2442656919
-
Atomic resolution structures and the mechanism of ion pumping in Bacteriorhodopsin
-
Edmonds B.W., Luecke H. Atomic resolution structures and the mechanism of ion pumping in Bacteriorhodopsin. Front. Biosci. 9:2004;1556-1566
-
(2004)
Front. Biosci.
, vol.9
, pp. 1556-1566
-
-
Edmonds, B.W.1
Luecke, H.2
-
19
-
-
0000005909
-
Time-resolved step-scan FT-IR investigations of the transition from KL to L in the bacteriorhodopsin photocycle: Identification of the chromophore twists by assigning hydrogen-out-of-plane (HOOP) bending vibrations
-
Weidlich O., Siebert F. Time-resolved step-scan FT-IR investigations of the transition from KL to L in the bacteriorhodopsin photocycle: identification of the chromophore twists by assigning hydrogen-out-of-plane (HOOP) bending vibrations. Appl. Spectrosc. 47:1993;1394-1400
-
(1993)
Appl. Spectrosc.
, vol.47
, pp. 1394-1400
-
-
Weidlich, O.1
Siebert, F.2
-
20
-
-
0030741221
-
The predischarge chromophore in bacteriorhodopsin: A 15N solid-state NMR study of the L photointermediate
-
Hu J.G., Sun B.Q., Petkova A.T., Griffin R.G., Herzfeld J. The predischarge chromophore in bacteriorhodopsin: a 15N solid-state NMR study of the L photointermediate. Biochemistry. 36:1997;9316-9322
-
(1997)
Biochemistry
, vol.36
, pp. 9316-9322
-
-
Hu, J.G.1
Sun, B.Q.2
Petkova, A.T.3
Griffin, R.G.4
Herzfeld, J.5
-
21
-
-
0017808832
-
Ultraviolet and visible absorption spectra of the purple membrane protein and the photocycle intermediates
-
Becher B., Tokunaga F., Ebrey T.G. Ultraviolet and visible absorption spectra of the purple membrane protein and the photocycle intermediates. Biochemistry. 17:1978;2293-2300
-
(1978)
Biochemistry
, vol.17
, pp. 2293-2300
-
-
Becher, B.1
Tokunaga, F.2
Ebrey, T.G.3
-
22
-
-
0742321700
-
L) intermediate of the bacteriorhodopsin photocycle
-
L) intermediate of the bacteriorhodopsin photocycle. J. Phys. Chem., B. 108:2004;1096-1101
-
(2004)
J. Phys. Chem., B
, vol.108
, pp. 1096-1101
-
-
Maeda, A.1
Verhoeven, M.A.2
Lugtenburg, J.3
Gennis, R.B.4
Balashov, S.P.5
Ebrey, T.G.6
-
23
-
-
0031829172
-
Lipidic cubic phases: New matrices for the three-dimensional crystallization of membrane proteins
-
Rummel G., Hardmeyer A., Widmer C., Chiu M.L., Nollert P., Locher K.P., Pedruzzi I., Landau E.M., Rosenbusch J.P. Lipidic cubic phases: new matrices for the three-dimensional crystallization of membrane proteins. J. Struct. Biol. 121:1998;82-91
-
(1998)
J. Struct. Biol.
, vol.121
, pp. 82-91
-
-
Rummel, G.1
Hardmeyer, A.2
Widmer, C.3
Chiu, M.L.4
Nollert, P.5
Locher, K.P.6
Pedruzzi, I.7
Landau, E.M.8
Rosenbusch, J.P.9
-
24
-
-
0032561127
-
A novel three-dimensional crystal of bacteriorhodopsin obtained by successive fusion of the vesicular assemblies
-
Takeda K., Sato H., Hino T., Kono M., Fukuda K., Sakurai I., Okada T., Kouyama T. A novel three-dimensional crystal of bacteriorhodopsin obtained by successive fusion of the vesicular assemblies. J. Mol. Biol. 283:1998;463-474
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 463-474
-
-
Takeda, K.1
Sato, H.2
Hino, T.3
Kono, M.4
Fukuda, K.5
Sakurai, I.6
Okada, T.7
Kouyama, T.8
-
25
-
-
0030880598
-
High resolution refinement
-
Sheldrick G.M. High resolution refinement. Methods Enzymol. 277:1997;319-343
-
(1997)
Methods Enzymol.
, vol.277
, pp. 319-343
-
-
Sheldrick, G.M.1
-
26
-
-
0000909776
-
On structure refinement using data from a twinned crystal
-
Jameson G.B. On structure refinement using data from a twinned crystal. Acta Crystallogr., A. 38:1982;817-820
-
(1982)
Acta Crystallogr., a
, vol.38
, pp. 817-820
-
-
Jameson, G.B.1
-
27
-
-
0041352147
-
X-ray crystallographic analysis of lipid-protein interactions in the bacteriorhodopsin purple membrane
-
Cartailler J.P., Luecke H. X-ray crystallographic analysis of lipid-protein interactions in the bacteriorhodopsin purple membrane. Annu. Rev. Biophys. Biomol. Struct. 32:2003;285-310
-
(2003)
Annu. Rev. Biophys. Biomol. Struct.
, vol.32
, pp. 285-310
-
-
Cartailler, J.P.1
Luecke, H.2
-
28
-
-
0035790044
-
Spectroscopic characterization of bacteriorhodopsin's L-intermediate in 3D crystals cooled to 170 K
-
Royant A., Edman K., Ursby T., Pebay-Peyroula E., Landau E.M., Neutze R. Spectroscopic characterization of bacteriorhodopsin's L-intermediate in 3D crystals cooled to 170 K. Photochem. Photobiol. 74:2001;794-804
-
(2001)
Photochem. Photobiol.
, vol.74
, pp. 794-804
-
-
Royant, A.1
Edman, K.2
Ursby, T.3
Pebay-Peyroula, E.4
Landau, E.M.5
Neutze, R.6
-
29
-
-
84989669798
-
Fourier transform infrared spectral studies on the Schiff base mode of all-trans bacteriorhodopsin and its photointermediates, K and L
-
Maeda A., Sasaki J., Pfefferle J.M., Shichida Y., Yoshizawa T. Fourier transform infrared spectral studies on the Schiff base mode of all-trans bacteriorhodopsin and its photointermediates, K and L. Photochem. Photobiol. 54:1991;911-921
-
(1991)
Photochem. Photobiol.
, vol.54
, pp. 911-921
-
-
Maeda, A.1
Sasaki, J.2
Pfefferle, J.M.3
Shichida, Y.4
Yoshizawa, T.5
-
31
-
-
0001385068
-
Photoisomerization in bacteriorhodopsin studied by FTIR, linear dichroism, and photoselection experiments combined with quantum chemical theoretical analysis
-
Fahmy K., Siebert F., Grossjean M.F., Tavan P. Photoisomerization in bacteriorhodopsin studied by FTIR, linear dichroism, and photoselection experiments combined with quantum chemical theoretical analysis. J. Mol. Struct. 214:1989;257-288
-
(1989)
J. Mol. Struct.
, vol.214
, pp. 257-288
-
-
Fahmy, K.1
Siebert, F.2
Grossjean, M.F.3
Tavan, P.4
-
32
-
-
0344863187
-
Thermal motions in bacteriorhodopsin at different hydration levels studied by neutron scattering: Correlation with kinetics and light-induced conformational changes
-
Lehnert U., Reat V., Weik M., Zaccai G., Pfister C. Thermal motions in bacteriorhodopsin at different hydration levels studied by neutron scattering: correlation with kinetics and light-induced conformational changes. Biophys. J. 75:1998;1945-1952
-
(1998)
Biophys. J.
, vol.75
, pp. 1945-1952
-
-
Lehnert, U.1
Reat, V.2
Weik, M.3
Zaccai, G.4
Pfister, C.5
-
33
-
-
0035345448
-
Trapping and spectroscopic identification of the photointermediates of bacteriorhodopsin at low temperatures
-
Balashov S.P., Ebrey T.G. Trapping and spectroscopic identification of the photointermediates of bacteriorhodopsin at low temperatures. Photochem. Photobiol. 73:2001;453-462
-
(2001)
Photochem. Photobiol.
, vol.73
, pp. 453-462
-
-
Balashov, S.P.1
Ebrey, T.G.2
-
34
-
-
0344629882
-
Water-mediated hydrogen-bonded network on the cytoplasmic side of the Schiff base of the L photointermediate of bacteriorhodopsin
-
Maeda A., Herzfeld J., Belenky M., Needleman R., Gennis R.B., Balashov S.P., Ebrey T.G. Water-mediated hydrogen-bonded network on the cytoplasmic side of the Schiff base of the L photointermediate of bacteriorhodopsin. Biochemistry. 42:2003;14122-14129
-
(2003)
Biochemistry
, vol.42
, pp. 14122-14129
-
-
Maeda, A.1
Herzfeld, J.2
Belenky, M.3
Needleman, R.4
Gennis, R.B.5
Balashov, S.P.6
Ebrey, T.G.7
-
35
-
-
0031556661
-
Bacteriorhodopsin intermediate spectra determined over a wide pH range
-
Gergely C., Zimanyi L., Varo G. Bacteriorhodopsin intermediate spectra determined over a wide pH range. J. Phys. Chem., B. 101:1997;9390-9395
-
(1997)
J. Phys. Chem., B
, vol.101
, pp. 9390-9395
-
-
Gergely, C.1
Zimanyi, L.2
Varo, G.3
-
36
-
-
0035498348
-
Internal water molecules as mobile polar groups for light-induced proton translocation in bacteriorhodopsin and rhodopsin as studied by difference FTIR spectroscopy
-
Maeda A. Internal water molecules as mobile polar groups for light-induced proton translocation in bacteriorhodopsin and rhodopsin as studied by difference FTIR spectroscopy. Biochemistry (Mosc.). 66:2001;1256-1268
-
(2001)
Biochemistry (Mosc.)
, vol.66
, pp. 1256-1268
-
-
Maeda, A.1
-
37
-
-
0037133499
-
Interaction of internal water molecules with the Schiff base in the L intermediate of the bacteriorhodopsin photocycle
-
Maeda A., Balashov S.P., Lugtenburg J., Verhoeven M.A., Herzfeld J., Belenky M., Gennis R.B., Tomson F.L., Ebrey T.G. Interaction of internal water molecules with the Schiff base in the L intermediate of the bacteriorhodopsin photocycle. Biochemistry. 41:2002;3803-3809
-
(2002)
Biochemistry
, vol.41
, pp. 3803-3809
-
-
Maeda, A.1
Balashov, S.P.2
Lugtenburg, J.3
Verhoeven, M.A.4
Herzfeld, J.5
Belenky, M.6
Gennis, R.B.7
Tomson, F.L.8
Ebrey, T.G.9
-
38
-
-
0037432333
-
Water molecule rearrangements around Leu93 and Trp182 in the formation of the L intermediate in bacteriorhodopsin's photocycle
-
Maeda A., Tomson F.L., Gennis R.B., Balashov S.P., Ebrey T.G. Water molecule rearrangements around Leu93 and Trp182 in the formation of the L intermediate in bacteriorhodopsin's photocycle. Biochemistry. 42:2003;2535-2541
-
(2003)
Biochemistry
, vol.42
, pp. 2535-2541
-
-
Maeda, A.1
Tomson, F.L.2
Gennis, R.B.3
Balashov, S.P.4
Ebrey, T.G.5
-
39
-
-
0000559536
-
a of the retinal protonated Schiff base in retinal proteins. A study with model compounds
-
a of the retinal protonated Schiff base in retinal proteins. A study with model compounds. J. Am. Chem. Soc. 115:1993;3772-3773
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 3772-3773
-
-
Gat, Y.1
Sheves, M.2
-
40
-
-
0034734227
-
NMR probes of vectoriality in the proton-motive photocycle of bacteriorhodopsin: Evidence for an 'electrostatic steering' mechanism
-
Herzfeld J., Tounge B. NMR probes of vectoriality in the proton-motive photocycle of bacteriorhodopsin: evidence for an 'electrostatic steering' mechanism. Biochim. Biophys. Acta. 1460:2000;95-105
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 95-105
-
-
Herzfeld, J.1
Tounge, B.2
-
41
-
-
0026737320
-
Pathways of proton release in the bacteriorhodopsin photocycle
-
Zimanyi L., Varo G., Chang M., Ni B., Needleman R., Lanyi J.K. Pathways of proton release in the bacteriorhodopsin photocycle. Biochemistry. 31:1992;8535-8543
-
(1992)
Biochemistry
, vol.31
, pp. 8535-8543
-
-
Zimanyi, L.1
Varo, G.2
Chang, M.3
Ni, B.4
Needleman, R.5
Lanyi, J.K.6
-
42
-
-
0031689147
-
Connectivity of the retinal Schiff base to Asp85 and Asp96 during the bacteriorhodopsin photocycle: The local-access model
-
Brown L.S., Dioumaev A.K., Needleman R., Lanyi J.K. Connectivity of the retinal Schiff base to Asp85 and Asp96 during the bacteriorhodopsin photocycle: the local-access model. Biophys. J. 75:1998;1455-1465
-
(1998)
Biophys. J.
, vol.75
, pp. 1455-1465
-
-
Brown, L.S.1
Dioumaev, A.K.2
Needleman, R.3
Lanyi, J.K.4
-
43
-
-
0030069626
-
Titration of aspartate-85 in bacteriorhodopsin: What it says about chromophore isomerization and proton release
-
Balashov S.P., Imasheva E.S., Govindjee R., Ebrey T.G. Titration of aspartate-85 in bacteriorhodopsin: what it says about chromophore isomerization and proton release. Biophys. J. 70:1996;473-481
-
(1996)
Biophys. J.
, vol.70
, pp. 473-481
-
-
Balashov, S.P.1
Imasheva, E.S.2
Govindjee, R.3
Ebrey, T.G.4
|