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Volumn 22, Issue 8, 2004, Pages 1017-1019

In silico simulation of biological network dynamics

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; COMPUTER SIMULATION; MICROPROCESSOR CHIPS; MOLECULES;

EID: 3543021471     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt991     Document Type: Article
Times cited : (61)

References (15)
  • 2
    • 0029037739 scopus 로고
    • Protein molecules as computational elements in living cells
    • Bray, D. Protein molecules as computational elements in living cells. Nature 376, 307-312 (1995).
    • (1995) Nature , vol.376 , pp. 307-312
    • Bray, D.1
  • 3
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell
    • Tyson, J.J., Chen, K.C. & Novak, B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 15, 221-231 (2003).
    • (2003) Curr. Opin. Cell Biol. , vol.15 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 4
    • 0346502065 scopus 로고    scopus 로고
    • Dynamical and integrative cell signaling: Challenges for the new biology
    • Levchenko, A. Dynamical and integrative cell signaling: Challenges for the new biology. Biotechnol. Bioeng. 84, 773-782 (2003).
    • (2003) Biotechnol. Bioeng. , vol.84 , pp. 773-782
    • Levchenko, A.1
  • 5
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical-reactions
    • Gillespie, D.T. Exact stochastic simulation of coupled chemical-reactions. J. Phys. Chem. Us. 81, 2340-2361 (1977).
    • (1977) J. Phys. Chem. Us. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 6
    • 0001144902 scopus 로고    scopus 로고
    • Efficient exact stochastic simulation of chemical systems with many species and many channels
    • Gibson, M.A. & Bruck, J. Efficient exact stochastic simulation of chemical systems with many species and many channels. J. Phys. Chem. A 104, 1876-1889 (2000).
    • (2000) J. Phys. Chem. A , vol.104 , pp. 1876-1889
    • Gibson, M.A.1    Bruck, J.2
  • 7
    • 0037109565 scopus 로고    scopus 로고
    • Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
    • Haseltine, E.L. & Rawlings, J.B. Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics. J. Chem. Phys. 117, 6959-6969 (2002).
    • (2002) J. Chem. Phys. , vol.117 , pp. 6959-6969
    • Haseltine, E.L.1    Rawlings, J.B.2
  • 8
    • 0242425970 scopus 로고    scopus 로고
    • Improved leap-size selection for accelerated stochastic simulation
    • Gillespie, D.T. & Petzold, L.R. Improved leap-size selection for accelerated stochastic simulation. J. Chem. Phys. 119, 8229-8234 (2003).
    • (2003) J. Chem. Phys. , vol.119 , pp. 8229-8234
    • Gillespie, D.T.1    Petzold, L.R.2
  • 9
    • 0037444724 scopus 로고    scopus 로고
    • Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
    • Rao, C.V. & Arkin, A.P. Stochastic chemical kinetics and the quasi-steady-state assumption: application to the Gillespie algorithm. J. Chem. Phys. 118, 4999-5010 (2003).
    • (2003) J. Chem. Phys. , vol.118 , pp. 4999-5010
    • Rao, C.V.1    Arkin, A.P.2
  • 10
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
    • Arkin, A., Ross, J. & McAdams, H.H. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149, 1633-1648 (1998).
    • (1998) Genetics , vol.149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 11
    • 0036607108 scopus 로고    scopus 로고
    • Modeling a Hox gene network in silico using a stochastic simulation algorithm
    • Kastner, J., Solomon, J. & Fraser, S. Modeling a Hox gene network in silico using a stochastic simulation algorithm. Dev. Biol. 246, 122-131 (2002).
    • (2002) Dev. Biol. , vol.246 , pp. 122-131
    • Kastner, J.1    Solomon, J.2    Fraser, S.3
  • 12
    • 0035905782 scopus 로고    scopus 로고
    • Modelling cellular behaviour
    • Endy, D. & Brent, R. Modelling cellular behaviour. Nature 409, 391-395 (2001).
    • (2001) Nature , vol.409 , pp. 391-395
    • Endy, D.1    Brent, R.2
  • 13
    • 0036204115 scopus 로고    scopus 로고
    • STOCKS: STOChastic kinetic Simulations of biochemical systems with Gillespie algorithm
    • Kierzek, A.M. STOCKS: STOChastic kinetic Simulations of biochemical systems with Gillespie algorithm. Bioinformatics 18, 470-481 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 470-481
    • Kierzek, A.M.1
  • 14
    • 3543004406 scopus 로고
    • An algorithm for pseudo random number generation suitable for large-scale integration
    • Pearson, R.B. An algorithm for pseudo random number generation suitable for large-scale integration. J. Comput. Phys. 49, 478-489 (1983).
    • (1983) J. Comput. Phys. , vol.49 , pp. 478-489
    • Pearson, R.B.1
  • 15
    • 0035896577 scopus 로고    scopus 로고
    • The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression
    • Kierzek, A.M., Zaim, J. & Zielenkiewicz, P. The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression. J. Biol. Chem. 276, 8165-8172 (2001).
    • (2001) J. Biol. Chem. , vol.276 , pp. 8165-8172
    • Kierzek, A.M.1    Zaim, J.2    Zielenkiewicz, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.