Random amplified polymorphic DNA (RAPD) and random amplified microsatellite (RAMS) of Ganoderma from infected oil palm and coconut stumps in Malaysia

Asia-Pacific Journal of Molecular Biology and Biotechnology

Volumn 13, Issue 1, 2005, Pages 23-34

  Zakaria, Latiffah ^a   Kulaveraasingham, Harikrishna ^b   Guan, Tan Soon ^a   Abdullah, Faridah ^a   Wan, Ho Yin ^b  

^a SCHOOL OF PHYSICS   (Malaysia)

^b UNIVERSITY PUTRA MALAYSIA   (Malaysia)

Author keywords

Coconut; Ganoderma; Oil palm; RAMS; RAPD

Indexed keywords

ELAEIS; GANODERMA; GANODERMA BONINENSE;

EID: 35349013175     PISSN: 01287451     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. Abdullah, F. 1996. Taxonomic and electrophoretic studies of selected species of Ganoderma (Karst.). Ph.D Thesis. Universiti Pertanian Malaysia, Selangor, Malaysia
2. Abdullah, F. 1998. Characterization, pathogenicity and cross pathogenicity studies of Ganoderma causal pathogen of basal stem rot of oil palm. UPM Research Report 1998. Volume 2. Universiti Putra Malaysia.
3. Abdullah, F. 2000. Spatial and sequential mapping of the incidence of basal stem rot of oil palm (Elaeis guineensis) on a former coconut (Cocos nucifera) plantation. In Ganoderma Diseases of Perennial Crops, ed. J. Flood, P.D., Bridge and P. Holderness.. CABI Publishing, Wallingford, United Kingdom. pp. 183-194.
4. Arifin, D., Singh, G., and Lim T.K. 1989. Ganoderma in Malaysia - Current Status and Research Strategy. In Proceedings of the 1989 PORIM International Palm Oil Development Conference-Module II: Agriculture. ed. S. Jalani and D. Arifin. Palm Oil Research Institute of Malaysia, Bangi, Selangor, Malaysia. pp. 249-297
5. Darmono, T.W. 1998. Variation among isolates of Ganoderma sp. From oil palm in Indonesia. Second International Workshop on Ganoderma Diseases. MARDI, Serdang, Malaysia. 5-8 October, 1998.
6. Hantula, J., Dusabenyagaasani M. and Hamelin R.C. 1996. Random Amplified Microsatellites (RAMS) - a novel method for characterization of genetic variation within fungi. European Journal of Forest Pathology 26:159-166.
7. Ho, Y. W. and Nawawi A. 1985. Ganoderma boninense Pat. From basal stem rot of oil palm (Elaies guineensis) in Peninsular Malaysia. Pertanika 8:425-428.
8. Hseu, R.S., Wang, H.H., Wang, H.F. and Moncalvo, J.M. 1996. Differentiation and grouping of isolates of Ganoderma lucidum complex by Random Amplified Polymorphic DNA-PCR compared with grouping on the basis of Internal Transcribed Spacer Sequences. Applied and Environmental Microbiology 62 (4): 1354-1363.
9. Idris, A.S., Thangavelu M. and Swinburne T.R. 1996. The use of RAPD for identification of species and detection of genetic variation in Ganoderma isolates from oil palm, rubber and other hardwood trees. In: Proceedings of the 1996 PORIM International Palm Oil Congress (Agriculture) ed. D. Arifin. pp. 538-551.
10. Idris, A.S. 1999. Basal stem rot (BSR) of oil palm (Elaeis guineensis Jacq.) in Malaysia:Factors associated with variation in disease severity. Ph.D Thesis. University of London, London, UK.
11. Khairudin, H. 1990. Basal stem rot of oil palm: Incidence, Etiology and Control. MSc Thesis. Universiti Pertanian Malaysia, Serdang, Selangor, Malaysia.
12. Kini, K.R., Leth, V. and Mathur, S.B. 2002. Genetic variation in Fusarium moniliforme isolated from seeds of different host species from Burkina Faso based on random amplified polymorphic DNA analysis. Journal of Phytopathology 150:209-212.
13. Larsen, R.C., Gritsenko, M.A., Hollingsworth, C.R. and Gray, F.A. 2002. A rapid method using PCR-based SCAR markers for the detection and identification of Phoma sclerotiodes: the cause of brown root rot disease of alfalfa. Plant Disease. D-2002-0627-01R (online publication).
14. Latiffah, Z., Abdullah F., Tan S.G., Harikrishna, K. and Ho, Y. W. 2002. Morphological and growth characteristics, and somatic incompatibility of Ganoderma from infected oil palm and coconut stumps. Malaysian Applied Biology 31:37-48.
15. Martinez-Culebrsa, P.V., Barrio, E., Suarez-Fernandez, M.B., Garcia-Lopez, M.D. and Querol, A. (2002). RAPD analysis of Colletotrichum species isolated from strawberry and the design of specific primers for the identification of C. Fragariae. Journal of Phytopathology 150:680-686.
16. Malvick, D.K., Grau, C.R. and Percich, J.A. 1998. Characterisation of Aphanomyces euteiches strains based on pathogenicity and random amplified polymorphic DNA analyses. Mycological Research 102:405-475.
17. Miller, R.N.G., Holderness M., Bridge P.D., Chung G.F. and Zakaria M.H. 1999. Genetic diversity of Ganoderma in oil palm plantings. Plant Pathology 48: 595-603.
18. Pilotti, C.A., Sanderson, F.R., Aitken, E.A.B. and Bridge P.D. 1998. Variability of Ganoderma sp. in Papua New Guinea. Second International Workshop on Ganoderma Diseases. MARDI, Serdang, Malaysia, 5-8 October, 1998.
19. Pilotti, C.A, Sanderson, F.R., Aitken, E.A.B and Bridge, P.D. 2000. Genetic variation of Ganoderma sp. From Papua New Guinea as revealed by molecular (PCR) methods. In Ganoderma Diseases of Perennial Crops. ed. J. Flood, P.D. Bridge and P. Holderness, pp. 195-204. CABI Publishing, Wallingford, United Kingdom.
20. Radisek, S., Zalskega, C., Jakse, J. and Javornik, B. 2004. Development of pathotype specific SCAR markers for detection of Verticillium albo-atrum isolates from hop. Plant Disease 88:1115-1122.
21. Raeder, U. and Broda P. 1985. Rapid preparation of DNA from filamentous fungi. Letters in Applied Microbiology 1:17-20.
22. Rohlf, F.J. 1994. NTSYS-pc Numerical Taxonomy and Multivariate Analysis System, Version 1.8. Exeter Publishing Ltd. Setauket, New York, USA.
23. Thompson, A. 1931. Stem rot of the oil palm in Malaya. Bulletin Department of Agriculture, Straits Settlements and F.M.S., Science Series 6, 23.
24. Turner, P.D. 1981. Oil Palm Diseases and Disorders. Oxford University Press.
25. Williams, J.G.K., Hanafey, M.K., Rafalski, J.A. and Tingey, S. 1993. Genetic analysis using random amplified polymorphic DNA markers. Methods on Enzymology 218:704-40.
26. Williams, J.G.K., Kubelik A.R., Lival, K.J., Rafalski J.A. and Tingey, S.V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18:6531-6535.