RAPD analysis of Colletotrichum species isolated from strawberry and the design of specific primers for the identification of C. fragariae

Journal of Phytopathology

Volumn 150, Issue 11-12, 2002, Pages 680-686

  Martinez Culebras, P V ^a   Barrio, E ^b   Suarez Fernandez, M B ^c   Garcia Lopez, M D ^a   Querol, A ^d  

^a UNIVERSITY OF VALENCIA   (Spain)

^b UNIVERSITY OF VALENCIA   (Spain)

^c UNIVERSITY OF SALAMANCA   (Spain)

^d CSIC   (Spain)

Author keywords

Colletotrichum fragariae; Colletotrichum species; Genetic analysis; Genetic diversity; Geographical variation; Identification; Strawberry anthracnose

Indexed keywords

FUNGAL DISEASE; GENETIC ANALYSIS; IDENTIFICATION METHOD;

COLLETOTRICHUM; COLLETOTRICHUM FRAGARIAE; FRAGARIA X ANANASSA; FUNGI; GLOMERELLA ACUTATA; GLOMERELLA CINGULATA; MYXOGASTRIA;

EID: 0036958662     PISSN: 09311785     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0434.2002.00823.x     Document Type: Article

References (37)

1. Adaskabeg, J. E., R. J. Hartin (1997): Characterization of Colletotrichum isolates causing anthracnose of almond and peach in California. Phytopathology 87, 979-987.
2. Assigbetse, B. K., D. Fernández, M. P. Dubois, J. P. Geiger (1994): Differentiation of Fusarium oxysporum f. sp. vasinfectum races on cotton by random amplified polymorphic DNA (RAPD) analysis. Phytopathology 84, 622-626.
3. Barlandin, R. S., A. M. Jarosz, J. D. Kelly (1997): Virulence and molecular diversity in Colletotrichum lindemuthianum from South, Central and North America. Phytopathology 87, 1184-1191.
4. Bidochka, M.J., M. A. McDonald, R. J. St Leger, D. W. Roberts (1994): Differentiation of species and strains of entomopathogenic fungi by random amplification of polymorphic DNA (RAPD). Curr. Genet. 25, 107-113.
5. Bonde, M. R., G. L. Petersen, J. L. Maas (1991): Isozyme comparisons for identification of Colletotrichum species pathogenic to strawberry. Phytopathology 81, 1523-1528.
6. Buddie, A., P. V. Martínez-Culebras, P. D. Bridge, P. F. Cannon, A. Querol, M. D. García, E. Monte (1999): Molecular characterization of Colletotrichum strains derived from strawberry. Mycol. Res. 103, 385-394.
7. Föster, K., J. E. Adaskaveg (1999): Identification of subpopulation of Colletotrichum acutatum and epidemiology of almond antracnose in California. Phytopathology 89, 1056-1065.
8. Freeman, S, M. Pham, R. J. Rodríguez (1993): Molecular genotyping of Colletotrichum species based on arbitrarily primed PCR, A + T-rich DNA, and nuclear DNA analyses. Exp. Mycol. 17, 309-322.
9. Freeman, S., R. J. Rodríguez (1995): Differentiation of Colletotrichum species responsible for anthracnose of strawberry by arbitrarily primed PCR. Mycol. Res. 99, 501-504.
10. Freeman, S., T. Katan (1997): Identification of Colletotrichum species responsible for anthracnose and root necrosis of strawberry in Israel. Phytopathology 87, 516-521.
11. Freeman, S., T. Katan, E. Shabi (1998): Characterization of Colletotrichum species responsible for anthracnose diseases of various fruits. Plant Dis. 82, 596-605.
12. Freeman, S., D. Minz, E. Jurkevitch, M. Maymon, E. Shabi (2000a): Molecular analysis of Colletotrichum species from almond and other fruits. Phytopathology 90, 608-614.
13. Freeman, S., E. Shabi, T. Katan (2000b): Characterization of Colletotrichum acutatum causing anthracnose disease of anemone. Appl. Environ. Microbiol. 66, 5267-5272.
14. Freeman, S., D. Minz, M. Maymon, A. Zveibil (2001): Genetic diversity within Colletotrichum acutatum sensu Simmonds. Phytopathology 91, 586-592.
15. Hanahan, D. (1983): Studies of transformation of Escherichia coli with plamids. J. Mol. Biol. 166, 557-580.
16. Hills, D. M., J. J. Bull (1993): An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42, 182-192.
17. Johnston, R. P., D. Jones (1997): Relationships among Colletotrichum isolates from fruits- rots assessed using rDNA sequences. Mycologia 89, 420-430.
18. Kelly, A. G., A. R. Alcalá-Jimenez, B. W. Bainbridge, J. B. Heale, E. Pérez-Artés, R. M. Jiménez-Díaz (1994): Use of genetic finger-printing and ramdom amplified potymorphic DNA to characterize pathotypes of Fusarium oxysporum f. sp. ciceris infecting chickpea. Phytopathology 84, 1293-1298.
19. Lardner, R., P. R. Johnston, K. M. Plummer, M. N. Pearson (1999): Morphological and molecular analysis of Colletotrichum acutatum sensu lato. Mycol. Res. 103, 275-285.
20. Lee, S. L., J. W. Taylor (1990): Isolation of DNA from fungal mycelia and single espores. In: Innis, M. A., D. H. Gelfand J. J Sninsky and T. J White (eds), PCR Protocols: A Guide to Methods and Applications, pp. 282-286, Academic Press, San Diego, CA, USA.
21. Macdonald, J. E., G. P. White, M. J. Côté (2000): Differentiation of Phoma foveata from P. exigua using a RAPD generated PCR-RFLP marker. Eur. J. Plant Pathol. 106, 67-75.
22. Manulis, S., N. Kogan, M. Reuven, Y. Ben-Yerphet (1994): Use of RAPD technique for identification of Fusarium oxysporum f. sp. dianthi from carnation. Phytopathology 84, 98-101.
23. Marchuck, D., M. Drumm, A. Saulino, F. S. Collins (1990): Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products.. Nucleic Acid Res. 19, 1154.
24. Martínez-Culebras, P. V., E. Barrio, M. D. García, A. Querol (2000): Identification of Colletotrichum species responsible for anthracnose of strawberry based on the internal transcribed spacers of the ribosomal region. FEMS Microbiol. Lett. 189, 97-101.
25. Maurer, P., Y. Couteaudier, P. A. Girard, P. D. Bridge, G. Riba (1997): Genetic diversity of Beauveria bassiana (Bals) Vuill. and relatedness to host insect range. Mycol. Res. 101, 159-164.
26. Muñoz, J. A. G., M. B. Suárez, I, Grondona, E. Monte, A. G. Buddie, P. D. Bridge, P. F Cannon, (2000): A physiological and biochemical approach to the systematics of Colletotrichum species pathogenic to strawberry. Mycologia 92, 488-498.
27. Nei, M., W. H. Li (1979): Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76, 5269-5273.
28. Nicholson, P., H. N. Rezanoor (1994): The use of random amplified polymorphic DNA to identify pathotype and detect variation in Pseudocercosporella herpotrichoides. Mycol. Res. 98, 13-21.
29. van de Peer, Y., R. de Wachter (1994): TREECOM for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft windows environment. Comput. Appl. Biosci. 10, 569-577.
30. Péez-Artés, E., M. D. García-Pedrajas, J. Bejarano-Alcazar, R. M. Jiménez-Díaz (2000): Differentiation of cotton-defoliating and non defoliating pathotypes of Verticillium dahliae by RAPD and specific PCR analyses. Eur. J. Plant Pathol. 106, 507-517.
31. Rodríguez, R. J. (1993): Polyphosphate present in DNA preparations from the filamentous fungal species of Colletotrichum inhibits restriction endonuclease and other enzymes. Ann. Biochem 209, 291-297.
32. Smith, B. J., L. L. Black (1990): Morphological, cultural and pathogenic variation among Colletotrichum species isolated from strawberry. Plant Dis. 74, 69-76.
33. Sokal, R. R., C. D. Michner (1958): A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 28, 1409-1438.
34. Sreenivasaprasad, S., A. E. Brown, P. R. Mills (1992): DNA sequence variation and interrelationships among Colletotrichum species causing strawberry anthracnose. Physiol. Mol. Plant Pathol. 41, 265-281.
35. Sreenivasaprasad, S., P. R. Mills, B. M. Meehan, A. E. Brown (1996): Phylogeny and systematics of 18 Colletotrichum species based on ribosomal DNA spacer sequences. Genome 39, 499-512.
36. Sutton, B. C. (1992): The genus Glomerella and its anamorph Colletotrichum. In: Bailey, A.J. and M. Jeger (eds), Colletotrichum, Biology, Pathology and Control, pp.1-26, CAB International, Wallingford, UK.
37. Williams, K. G. J., A. R. Kubelik, J. K. Livak J. A. Rafalski, S. V. Tingey (1990): DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Res. 18, 6531-6535.