Functional proteome analysis of human platelets;Funktionelle proteomanalyse humaner thrombozyten

Hamostaseologie

Volumn 27, Issue 4, 2007, Pages 241-245

  Lewandrowski, U ^a   Zahedi, R P ^a   Moebius, J ^a   Sickmann, Albert ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

Glycosylation; Mass spectrometry; Phosphorylation; Platelets; Proteome

Indexed keywords

CELL MEMBRANE; CONFERENCE PAPER; HUMAN; MASS SPECTROMETRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN GLYCOSYLATION; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; PROTEOMICS; THROMBOCYTE;

EID: 35348932235     PISSN: 07209355     EISSN: None     Source Type: Journal    
DOI: 10.1055/s-0037-1617088     Document Type: Conference Paper

References (38)

1. Wilkins MR, Sanchez JC, Gooley AA et al. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev 1996; 13: 19-50.
2. Karas M, Hillenkamp F. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 1988; 60: 2299-2301.
3. Fenn JB, Mann M, Meng CK et al. Electrospray ionization for mass spectrometry of large biomolecules. Science 1989; 246: 64-71.
4. Bentley DR. The Human Genome Project - an overview. Med Res Rev 2000; 20: 189-196.
5. Perkins DN, Pappin DJ, Creasy DM et al. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999; 20: 3551-3567.
6. Clementson K. Platelet receptors. In: Michelson A (ed). Platelets. San Diego: 2002, 64-84.
7. Marcus K, Immler D, Sternberger J et al. Identification of platelet proteins separated by two-dimensional gel electrophoresis and analyzed by matrix assisted laser desorption/ionization-time of flight-mass spectrometry and detection of tyrosine-phosphorylated proteins. Electrophoresis 2000, 21. 2622-2636.
8. Garcia A, Prabhakar S, Brock CJ et al. Extensive analysis of the human platelet proteome by two-dimensional gel electrophoresis and mass spectrometry. Proteomics 2004; 4: 656-668.
9. O'Neill EE, Brock CJ, von Kriegsheim AF et al. Towards complete analysis of the platelet proteome. Proteomics 2002; 2: 288-305.
10. Garcia BA, Smalley DM, Cho H et al. The Platelet Microparticle Proteome. J Proteome Res 2005; 4. 1516-1521.
11. Crawford N, Authi KS, Hack N. Isolation and characterization of platelet membranes prepared by free flow electrophoresis. Methods Enzymol 1992; 215: 5-20.
12. Kinoshita T, Nachman RL, Minick R. Isolation of human platelet plasma membranes with polylysine beads. J Cell Biol 1979; 82: 688-696.
13. Barber AJ, Jamieson GA. Isolation and characterization of plasma membranes from human blood platelets. J Biol Chem 1970; 245: 6357-6365.
14. Rittenhouse-Simmons S, Deykin D. Isolation of membranes from normal and thrombin-treated gel-filtered platelets using a lectin marker. Biochim Biophys Acta 1976; 426: 688-696.
15. Lanillo M, Cabezas JA. Isolation, characterization and chemical composition of the membrane from sheep platelets. Biochim Biophys Acta 1981; 649: 229-238.
16. Moebius J, Zahedi RP, Lewandrowski U et al. The human platelet membrane proteome reveals several new potential membrane proteins. Mol Cell Proteomics 2005; 4: 1754-1761.
17. Persson A, Jergil B. The purification of membranes by affinity partitioning. Faseb J 1995; 9: 1304-1310.
18. Schindler J, Lewandrowski U, Sickmann A et al. Proteomic analysis of brain plasma membranes isolated by affinity two-phase partitioning. Mol Cell Proteomics 2006; 5: 390-400.
19. Hartinger J, Stenius K, Hogemann D et al. 16-BAC/SDS-PAGE: a two-dimensional gel electrophoresis system suitable for the separation of integral membrane proteins. Anal Biochem 1996; 240: 126-133.
20. De Vet EC, Aguado B, Campbell RD. G6b, a novel immunoglobulin superfamily member encoded in the human major histocompatibility complex, interacts with SHP-1 and SHP-2. J Biol Chem 2001; 276: 42070-42076.
21. De Vet EC, Newland SA, Lyons PA et al. The cell surface receptor G6b, a member of the immunoglobulin superfamily, binds heparin. FEBS Lett 2005; 579: 2355-2358.
22. Senis YA, Tomlinson MG, Garcia A et al. A comprehensive proteomics and genomics analysis reveals novel transmembrane proteins in human platelets and mouse megakaryocytes including G6b-B, a novel ITIM protein. Mol Cell Proteomics 2007; 6: 548-564.
23. Le Naour F, Andre M, Greco C et al. Profiling of the tetraspanin web of human colon cancer cells. Mol Cell Proteomics 2006; 5: 845-857.
24. Hemler ME. Tetraspanin functions and associated microdomains. Nat Rev Mol Cell Biol 2005; 6: 801-811.
25. Lau LM, Wee JL, Wright MD et al. The tetraspanin superfamily member CD151 regulates outside-in integrin alphaIIbbeta3 signaling and platelet function. Blood 2004; 104: 2368-2375.
26. Reinders J, Sickmann A. State-of-the-art in phosphoproteomics. Proteomics 2005; 5: 4052-4061.
27. Pinkse MW, Uitto PM, Hilhorst MJ et al. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns. Anal Chem 2004; 76: 3935-3943.
28. Kuroda I, Shintani Y, Motokawa M et al. Phosphopeptide-selective column-switching RP-HPLC with a titania precolumn. Anal Sci 2004; 20: 1313-1319.
29. Beausoleil SA, Jedrychowski M, Schwartz D et al. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc Natl Acad Sci USA 2004; 101: 12130-12135.
30. Gu J, Taniguchi N. Regulation of integrin functions by N-glycans. Glycoconj J 2004; 21: 9-15.
31. Kunicki TJ, Cheli Y, Moroi M et al. The influence of N-linked glycosylation on the function of platelet glycoprotein VI. Blood 2005; 106: 2744-2749.
32. Josefsson EC, Gebhard HH, Stossel TP et al. The macrophage alphaMbeta2 integrin alphaM lectin domain mediates the phagocytosis of chilled platelets. J Biol Chem 2005; 280: 18025-18032.
33. Lewandrowski U, Moebius J, Walter U et al. Elucidation of N-glycosylation sites on human platelet proteins: A glycoproteomic approach. Mol Cell Proteomics 2006; 5: 226-233.
34. Kaji H, Saito H, Yamauchi Y et al. Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat Biotechnol 2003; 21: 667-672.
35. Hagglund P, Bunkenborg J, Elortza F et al. A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation. J Proteome Res 2004; 3: 556-566.
36. Zhang H, Li XJ, Martin DB et al. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat Biotechnol 2003; 21: 660-666.
37. Gevaert K, van Damme P, Ghesquiere B et al. Protein processing and other modifications analyzed by diagonal peptide chromatography. Biochim Biophys Acta 2006; 1764: 1801-1810.
38. Von Mering C, Huynen M, Jaeggi D et al. STRING: a database of predicted functional associations between proteins. Nucleic Acids Res 2003; 31: 258-261.