-
1
-
-
20744455048
-
Statistical inference for discretely observed Markov jump processes
-
Bladt M., and Sørensen M. Statistical inference for discretely observed Markov jump processes. J.R. Statist. Soc. B 67 (2005) 395-410
-
(2005)
J.R. Statist. Soc. B
, vol.67
, pp. 395-410
-
-
Bladt, M.1
Sørensen, M.2
-
2
-
-
33748572951
-
Fitting timeseries by continuous-time Markov chains: a quadratic programming approach
-
Crommelin D.T., and Vanden-Eijnden E. Fitting timeseries by continuous-time Markov chains: a quadratic programming approach. J. Comp. Phys. 217 (2006) 782-805
-
(2006)
J. Comp. Phys.
, vol.217
, pp. 782-805
-
-
Crommelin, D.T.1
Vanden-Eijnden, E.2
-
3
-
-
85189844463
-
-
T. Müller, Modellierung von Proteinevolution, PhD thesis, Heidelberg, 2001.
-
-
-
-
4
-
-
85189843134
-
-
A. Hobolth, J.L. Jensen, Statistical inference in evolutionary models of DNA sequences via the EM algorithm, Statistical Applications in Genetics and Molecular Biology 4 (2005) Article 18.
-
-
-
-
5
-
-
0036134748
-
Estimating amino acid substitution models: A comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method
-
Müller T., Spang R., and Vingron M. Estimating amino acid substitution models: A comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method. Mol. Biol. Evol. 19 (2002) 8-13
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 8-13
-
-
Müller, T.1
Spang, R.2
Vingron, M.3
-
6
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
Dempster A.P., Laird N.M., and Rubin D.B. Maximum likelihood from incomplete data via the EM algorithm. J.R. Statist. Soc. 39 (1977) 1-38
-
(1977)
J.R. Statist. Soc.
, vol.39
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
8
-
-
0027641030
-
Hybrid Monte Carlo simulations theory and initial comparison with molecular dynamics
-
Brass A., Pendleton B.J., Chen Y., and Robson B. Hybrid Monte Carlo simulations theory and initial comparison with molecular dynamics. Biopolymers 33 (1993) 1307-1315
-
(1993)
Biopolymers
, vol.33
, pp. 1307-1315
-
-
Brass, A.1
Pendleton, B.J.2
Chen, Y.3
Robson, B.4
-
10
-
-
0035789518
-
Gromacs 3.0: a package for molecular simulation and trajectory analysis
-
Lindahl E., Hess B., and van der Spoel D. Gromacs 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Mod. 7 (2001)
-
(2001)
J. Mol. Mod.
, vol.7
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
11
-
-
0034370539
-
Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains
-
Deuflhard P., Huisinga W., Fischer A., and Schütte Ch. Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains. Lin. Alg. Appl. 315 (2000) 39-59
-
(2000)
Lin. Alg. Appl.
, vol.315
, pp. 39-59
-
-
Deuflhard, P.1
Huisinga, W.2
Fischer, A.3
Schütte, Ch.4
-
12
-
-
85189842972
-
-
F. Cordes, M. Weber, J. Schmidt-Ehrenberg, Metastable conformations via successive Perron-Cluster Cluster analysis of dihedrals, ZIB-Report 02-40 (2002).
-
-
-
-
13
-
-
85189846051
-
-
E. Weinan, Vanden-Eijnden, Towards a theory of transition paths, J. Stat. Phys. 123 (2006) 503-523.
-
-
-
-
14
-
-
33748366393
-
Illustration of transition path theory on a collection of simple examples
-
Metzner P., Schütte C., and Vanden-Eijnden E. Illustration of transition path theory on a collection of simple examples. J. Chem. Phys. 125 (2006) 084110
-
(2006)
J. Chem. Phys.
, vol.125
, pp. 084110
-
-
Metzner, P.1
Schütte, C.2
Vanden-Eijnden, E.3
-
15
-
-
85189845367
-
-
P. Metzner, Ch. Schütte, E. Vanden-Eijnden, Transition path theory for Markov jump processes, submitted for publication.
-
-
-
-
16
-
-
0035592363
-
Finding generators for Markov chains via empirical transition matrices with applications to credit ranking
-
Israel R.B., Rosenthal J.S., and Wei J.Z. Finding generators for Markov chains via empirical transition matrices with applications to credit ranking. Mathematical Finance 11 (2001) 245-265
-
(2001)
Mathematical Finance
, vol.11
, pp. 245-265
-
-
Israel, R.B.1
Rosenthal, J.S.2
Wei, J.Z.3
-
17
-
-
85189849904
-
-
U. Nodelman, C.R. Shelton, D. Koller, Expectation maximization and complex duration distributions for continuous time Bayesian networks, in: Proceedings of the Twenty-first Conference on Uncertainty in AI (UAI), 2005, pp. 421-430.
-
-
-
-
18
-
-
0036298990
-
An expectation maximization algorithm for training hidden substitution models
-
Holmes I., and Rubin G.M. An expectation maximization algorithm for training hidden substitution models. J. Mol. Biol. 317 (2002) 753-764
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 753-764
-
-
Holmes, I.1
Rubin, G.M.2
-
19
-
-
0030502888
-
Fitting phase-type distributions via the EM algorithm
-
Asmussen S., Nerman O., and Olsson M. Fitting phase-type distributions via the EM algorithm. Scand. J. Stat. 23 (1996) 419-441
-
(1996)
Scand. J. Stat.
, vol.23
, pp. 419-441
-
-
Asmussen, S.1
Nerman, O.2
Olsson, M.3
-
20
-
-
0031453046
-
Estimation of reversible substitution matrices from multiple pairs of sequences
-
Arvestad L., and Bruno W.J. Estimation of reversible substitution matrices from multiple pairs of sequences. J. Mol. Evol. 45 (1997) 696-703
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 696-703
-
-
Arvestad, L.1
Bruno, W.J.2
|