Addition of allochthonous fungi to a historically contaminated soil affects both remediation efficiency and bacterial diversity

Applied Microbiology and Biotechnology

Volumn 77, Issue 1, 2007, Pages 203-211

  Federici, Ermanno ^a   Leonardi, Vanessa ^b   Giubilei, Maria A ^a,b   Quaratino, Daniele ^c   Spaccapelo, Roberta ^a   D'Annibale, Alessandro ^b   Petruccioli, Maurizio ^b  

^a UNIVERSITY OF PERUGIA   (Italy)

^b UNIVERSITY OF TUSCIA   (Italy)

^c Interuniversitary consortium 'The Chemistry for the Environment' (INCA)   (Italy)

Author keywords

Aromatic hydrocarbons; Bioaugmentation; DGGE; Historically contaminated soil; Microbial interactions; Mycoremediation

Indexed keywords

AROMATIC HYDROCARBONS; BACTERIA; DETOXIFICATION; NUMERICAL METHODS; SOILS;

BIOAUGMENTATION; HISTORICALLY CONTAMINATED SOIL; MICROBIAL INTERACTIONS; MYCOREMEDIATION;

FUNGI;

AROMATIC HYDROCARBON; RNA 16S;

ALLOCHTHONY; BACTERIUM; BIODEGRADATION; COLONIZATION; DETOXIFICATION; FUMIGATION; FUNGUS; GROWTH RESPONSE; MICROBIAL COMMUNITY; PRISTINE ENVIRONMENT; SOIL POLLUTION; SOIL REMEDIATION; SPECIES DIVERSITY;

ARTICLE; BACTERIAL COUNT; BACTERIAL FLORA; BIODEGRADATION; BOTRYOSPHAERIA RHODINA; DENATURING GRADIENT GEL ELECTROPHORESIS; DETOXIFICATION; FUNGAL COLONIZATION; FUNGUS; FUNGUS GROWTH; GENE AMPLIFICATION; HETEROTROPH; INFECTION CONTROL; MICROBIAL DIVERSITY; MICROFLORA; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLEUROTUS PULMONARIUS; POLYMERASE CHAIN REACTION; QUALITATIVE ANALYSIS; QUANTITATIVE STUDY; SOIL POLLUTION;

ASCOMYCOTA; BACTERIA; BIODEGRADATION, ENVIRONMENTAL; BIODIVERSITY; CLUSTER ANALYSIS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FUNGI; HYDROCARBONS, AROMATIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VARIATION (GENETICS);

BACTERIA (MICROORGANISMS); BOTRYOSPHAERIA RHODINA; FUNGI; PLEUROTUS PULMONARIUS;

EID: 35348821871     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-1143-1     Document Type: Article

References (34)

1. Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
2. Andersson BE, Lundstedt S, Tornberg K, Schnuerer Y, Oeberg LG, Mattiasson B (2003) Incomplete degradation of polycyclic aromatic hydrocarbons in soil inoculated with wood-rotting fungi and their effect on the indigenous soil bacteria. Environ Toxicol Chem 22:1238-1243
3. Berselli S, Milone G, Canepa P, Di Gioia D, Fava F (2004) Effect of cyclodextrins, humic substances and rhamnolipids on the washing of a historically contaminated soil and on the aerobic bioremediation of the resulting effluents. Biotechnol Bioeng 88:111-120
4. Boonchan S, Britz ML, Stanley GA (2000) Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl Environ Microbiol 66:1007-1019
5. Bosch R, Moore ERB, García-Valdés E, Pieper DH (1999) NahW, a novel, inducible salicylate hydroxylase involved in mineralization of naphthalene by Pseudomonas stutzeri AN10. J Bacteriol 181:2315-2322
6. Calvo F, Martínez-Checa C, Toledo F, Porcel J, Quesa E (2002) Characteristics of bioemulsifiers synthesised in crude oil media by Halomonas eurihalina and their effectiveness in the isolation of bacteria able to grow in the presence of hydrocarbons. Appl Microbiol Biotechnol 60:347-351
7. Canet R, Birnstingl JG, Malcom DG, Lopez-Real JM, Beck AJ (2001) Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by native microflora and combination of white-rot fungi in a coal-tar contaminated soil. Bioresour Technol 76:113-117
8. D'Annibale A, Ricci M, Leonardi V, Quaratino D, Mincione E, Petruccioli M (2005) Degradation of aromatic hydrocarbons by white-rot fungi in a historically contaminated soil. Biotechnol Bioeng 90:723-731
9. D'Annibale A, Rosetto F, Leonardi V, Federici F, Petruccioli M (2006) Role of autochthonous filamentous fungi in bioremediation of a soil historically contaminated with aromatic hydrocarbons. Appl Environ Microbiol 72:28-36
10. Dekker RFH, Barbosa AM, Sargent K (2002) The effect of lignin-related compounds on the growth and production of laccases by the ascomycete, Botryosphaeria sp. Enzyme Microb Technol 30:374-380
11. Dunbar J, Ticknor LO, Cheryl R, Kuske CR (2001) Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA gene from bacterial communities. Appl Environ Microbiol 67:190-197
12. Feitkenhauer H, Müller R, Märkl H (2003) Degradation of polycyclic aromatic hydrocarbons and long chain alkanes at 60-70°C by Thermus and Bacillus spp. Biodegradation 14:367-372
13. Gonzalez JM, Ortiz-Martinez A, Gonzalez-delValle MA, Laiz L, Saiz-Jimenez C (2003) An efficient strategy for screening large cloned libraries of amplified 16S rDNA sequences from complex environmental communities. J Microbiol Methods 55:459-463
14. Gramss G, Voigt KD, Kirsche B (1999) Degradation of polycyclic aromatic hydrocarbons with three to seven aromatic rings by higher fungi in sterile and unsterile soils. Biodegradation 10:51-62
15. Grant RJ, Muckian LM, Clipson NJW, Doyle EM (2007) Microbial community changes during the bioremediation of creosote-contaminated soil. Lett Appl Microbiol 44:293-300
16. Habe H, Omori T (2003) Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci Biotech Biochem 67:225-243
17. in der Wiesche C, Martens R, Zadrazil F (2003) The effect of interaction between white-rot fungi and indigenous microorganisms on degradation of polycyclic aromatic hydrocarbons in soil. Water Air Soil Pollut Focus 3:73-79
18. Juhasz AL, Naidu R (2000) Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a]pyrene. Int Biodeterior Biodegrad 45:57-88
19. Katsivela E, Moore ERB, Maroukli D, Strömpl C, Pieper D, Kalogerakis N (2005) Bacterial community dynamics during in-situ bioremediation of petroleum waste sludge in landfarming sites. Biodegradation 16:169-180
20. Kotterman MJJ, Vis EH, Field JA (1998) Successive mineralization and detoxification of benzo[a]pyrene by the white-rot fungus Bjerkandera BOS55 and indigenous microflora. Appl Environ Microbiol 64:2853-2858
21. Lang E, Kleeberg I, Zadrazil F (2000) Extractable organic carbon and counts of bacteria near the lignocellulose-soil interface during the interaction of soil microbiota and white rot fungi. Bioresour Technol 75:57-65
22. Li C, Moe WM (2004) Assessment of microbial populations in methyl ethyl ketone degrading biofilters by denaturing gradient gel electrophoresis. Appl Microbiol Biotechnol 64:568-575
23. Macnaughton SJ, Stephen JR, Venosa AD, Davis GA, Chang Y-J, White DC (1999) Microbial population changes during bioremediation of an experimental oil spill. Appl Environ Microbiol 65:3566-3574
24. Meulenberg R, Rijnaarts HHM, Doddema HJ, Field JA (1997) Partially oxidized polycyclic aromatic hydrocarbons show an increased bioavailability and biodegradability. FEMS Microbiol Lett 152:45-49
25. Mougin C, Pericaud C, Dubroca J, Asther M (1997) Enhanced mineralization of lindane in soils supplemented with the white rot basidiomycete Phanerochaete chrysosporium. Soil Biol Biochem 29:1321-1324
26. Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
27. Novotny C, Erbanova P, Šašek V, Kubatova A., Cajthaml T, Lang E, Krahl J, Zadrazil F (1999) Extracellular oxidative enzyme production and PAH removal in soil by exploratory mycelium of white rot fungi. Biodegradation 10:159-168
28. Phongpaichit S, Rungjindamai N, Rukachaisirikul V, Sakayaroj J (2006) Antimicrobial activity in cultures of endophytic fungi isolated from Garcinia species. FEMS Immunol Med Microbiol 48:367-372
29. Pointing SB (2001) Feasibility of bioremediation by white-rot fungi. Appl Microbiol Biotechnol 57:20-33
30. Radtke C, Cook WS, Andersson A (1994) Factors affecting antagonism of growth of Phanerochaete chrysosporium by bacteria isolated from soils. Appl Microbiol Biotechnol 41:274-280
31. Šašek V (2003) Why mycoremediations have not yet come into practice. In: Šašek V, Glaser JA, Baveye Ph (eds) The utilization of bioremediation to reduce soil contamination: problems and solution. Kluwer Academic, Netherlands, pp 247-266
32. Trevors JT (1996) Sterilization and inhibition of microbial activity in soil. J Microbiol Methods 26:53-59
33. Tucker B, Radtke C, Kwon SI, Andersson AJ (1995) Suppression of bioremediation by Phanerochaete chrysosporium by soil factors. J Hazard Mater 41:251-265
34. Vrdoljak G, Feil WS, Feil H, Detter JC, Fields P (2005) Characterization of a diesel sludge microbial consortia for bioremediation. Scanning 27:8-14