-
2
-
-
35248879785
-
On the complexity of deriving position specific score matrices from examples
-
A. Apostolico and M. Takeda, editors, Combinatorial Pattern Matching, 13th Annual Symposium (CPM 2002), Springer
-
Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, and Sascha Ott. On the complexity of deriving position specific score matrices from examples. In A. Apostolico and M. Takeda, editors, Combinatorial Pattern Matching, 13th Annual Symposium (CPM 2002), volume 2373 of Lecture Notes in Computer Science, pages 168-177. Springer, 2002.
-
(2002)
Lecture Notes in Computer Science
, vol.2373
, pp. 168-177
-
-
Akutsu, T.1
Bannai, H.2
Miyano, S.3
Ott, S.4
-
3
-
-
0011545127
-
The NP-completeness of finding A-trails in Eulerian graphs and of finding spanning trees in hypergraphs
-
L. D. Andersen and H. Fleischner. The NP-completeness of finding A-trails in Eulerian graphs and of finding spanning trees in hypergraphs. Discrete Applied Mathematics, 59:203-214, 1995.
-
(1995)
Discrete Applied Mathematics
, vol.59
, pp. 203-214
-
-
Andersen, L.D.1
Fleischner, H.2
-
4
-
-
10044235634
-
Thin junction trees
-
Thomas G. Dietterich, Suzanna Becker, and Zoubin Ghahramani, editors, MIT Press
-
F. R. Bach and M. I. Jordan. Thin junction trees. In Thomas G. Dietterich, Suzanna Becker, and Zoubin Ghahramani, editors, Proceedings of NIPS 2001, pages 569-576. MIT Press, 2001.
-
(2001)
Proceedings of NIPS 2001
, pp. 569-576
-
-
Bach, F.R.1
Jordan, M.I.2
-
5
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
C. Burge and S. Karlin. Prediction of complete gene structures in human genomic DNA. Journal of Molecular Biology, 268:78-94, 1997.
-
(1997)
Journal of Molecular Biology
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
6
-
-
61649085735
-
Modeling dependencies in pre-mRNA splicing signals
-
S. L Salzberg, D. B. Searls, and S. Kasif, editors, Elsevier, Amsterdam
-
C. B. Burge. Modeling dependencies in pre-mRNA splicing signals. In S. L Salzberg, D. B. Searls, and S. Kasif, editors, Computational Methods in Molecular Biology, pages 129-164. Elsevier, Amsterdam, 1998.
-
(1998)
Computational Methods in Molecular Biology
, pp. 129-164
-
-
Burge, C.B.1
-
7
-
-
0034136782
-
Modeling splice sites with Bayes networks
-
D. Cai, A. Delcher, B. Kao, and S. Kasif. Modeling splice sites with Bayes networks. Bioinformatics, 16(2):152-158, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.2
, pp. 152-158
-
-
Cai, D.1
Delcher, A.2
Kao, B.3
Kasif, S.4
-
8
-
-
84933530882
-
Approximating discrete probability distributions with dependence trees
-
C. K. Chow and C. N. Liu. Approximating discrete probability distributions with dependence trees. IEEE Transactions on Information Theory, IT-14(3):462-467, 1968.
-
(1968)
IEEE Transactions on Information Theory
, vol.IT-14
, Issue.3
, pp. 462-467
-
-
Chow, C.K.1
Liu, C.N.2
-
9
-
-
0037084825
-
Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human
-
F. Clark and T. A. Thanaraj. Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human. Human Molecular Genetics, 11(4):451-454, 2002.
-
(2002)
Human Molecular Genetics
, vol.11
, Issue.4
, pp. 451-454
-
-
Clark, F.1
Thanaraj, T.A.2
-
10
-
-
0004116989
-
-
MIT Press, Cambridge, Mass., 2nd edition
-
T. H. Cormen, C. E. Leiserson, R. L. Rivest, and C. Stein. Introduction to Algorithms. MIT Press, Cambridge, Mass., 2nd edition, 2001.
-
(2001)
Introduction to Algorithms
-
-
Cormen, T.H.1
Leiserson, C.E.2
Rivest, R.L.3
Stein, C.4
-
11
-
-
79960655760
-
The DNA sequence of human chromosome 22
-
I. Dunham et al. The DNA sequence of human chromosome 22. Nature, 402:489-495, 1999.
-
(1999)
Nature
, vol.402
, pp. 489-495
-
-
Dunham, I.1
-
12
-
-
0242424698
-
Identifying transcription factor binding sites through Markov chain optimization
-
K. Ellrott, C. Yang, F. M. Sladek, and T. Jiang. Identifying transcription factor binding sites through Markov chain optimization. In Proceedings of the European Conference on Computational Biology (ECCB 2002), pages 100-109, 2002.
-
(2002)
Proceedings of the European Conference on Computational Biology (ECCB 2002)
, pp. 100-109
-
-
Ellrott, K.1
Yang, C.2
Sladek, F.M.3
Jiang, T.4
-
14
-
-
36249023494
-
Directed hypergraphs and applications
-
G. Gallo, G. Longo, S. Pallottino, and S. Nguyen. Directed hypergraphs and applications. Discrete Applied Mathematics, 42:177-201, 1993.
-
(1993)
Discrete Applied Mathematics
, vol.42
, pp. 177-201
-
-
Gallo, G.1
Longo, G.2
Pallottino, S.3
Nguyen, S.4
-
15
-
-
35248814424
-
-
Computer software
-
ILOG Inc. CPLEX optimizer, 2000. Computer software.
-
(2000)
CPLEX Optimizer
-
-
-
17
-
-
0003037529
-
Reducibility among combinatorial problems
-
R. E. Miller and J. W. Thatcher, editors, New York, Plenum Press
-
R. M. Karp. Reducibility among combinatorial problems. In R. E. Miller and J. W. Thatcher, editors, Complexity of Computer Computations, pages 85-103, New York, 1972. Plenum Press.
-
(1972)
Complexity of Computer Computations
, pp. 85-103
-
-
Karp, R.M.1
-
18
-
-
0032518163
-
Microbial gene identification using interpolated Markov models
-
S. L. Salzberg, A. L. Delcher, S. Kasif, and O. White. Microbial gene identification using interpolated Markov models. Nucleic Acids Research, 26(2):544-548, 1998.
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.2
, pp. 544-548
-
-
Salzberg, S.L.1
Delcher, A.L.2
Kasif, S.3
White, O.4
-
20
-
-
0021668603
-
Computer methods to aid the determination and analysis of DNA sequences
-
R. Staden. Computer methods to aid the determination and analysis of DNA sequences. Biochemical Society Transactions, 12(6):1005-1008, 1984.
-
(1984)
Biochemical Society Transactions
, vol.12
, Issue.6
, pp. 1005-1008
-
-
Staden, R.1
-
21
-
-
0020480251
-
Use of the 'Perception' algorithm to distinguish translational initiation sites in E. coli
-
G. D. Stormo, T. D. Schneider, L. E. Gold, and A. Ehrenfeucht. Use of the 'Perception' algorithm to distinguish translational initiation sites in E. coli. Nucleic Acids Research, 10(9):2997-3011, 1982.
-
(1982)
Nucleic Acids Research
, vol.10
, Issue.9
, pp. 2997-3011
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.E.3
Ehrenfeucht, A.4
-
22
-
-
0031921640
-
Statistical features of human exons and their flanking regions
-
M. Q. Zhang. Statistical features of human exons and their flanking regions. Human Molecular Genetics, 7(5):919-932, 1998.
-
(1998)
Human Molecular Genetics
, vol.7
, Issue.5
, pp. 919-932
-
-
Zhang, M.Q.1
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