메뉴 건너뛰기




Volumn 9, Issue 11, 2007, Pages 2742-2755

Transcriptional response of Silicibacter pomeroyi DSS-3 to dimethylsulfoniopropionate (DMSP)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; DIMETHYLPROPIOTHETIN; SULFONIUM DERIVATIVE; SULFUR; UNCLASSIFIED DRUG;

EID: 35148888991     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2007.01386.x     Document Type: Article
Times cited : (49)

References (51)
  • 2
    • 0025585827 scopus 로고
    • Ocean-atmosphere interactions in the global biogeochemical sulfur cycle
    • Andreae, M.O. (1990) Ocean-atmosphere interactions in the global biogeochemical sulfur cycle. Mar Chem 30 : 1 29.
    • (1990) Mar Chem , vol.30 , pp. 1-29
    • Andreae, M.O.1
  • 3
    • 0032755261 scopus 로고    scopus 로고
    • Metabolism of acrylate to beta -hydroxypropionate and its role in dimethylsulfoniopropionate lyase induction by a salt marsh sediment bacterium, Alcaligenes faecalis M3A
    • Ansede, J.H., Pellechia, P.J. Yoch, D.C. (1999) Metabolism of acrylate to beta -hydroxypropionate and its role in dimethylsulfoniopropionate lyase induction by a salt marsh sediment bacterium, Alcaligenes faecalis M3A. Appl Environ Microbiol 65 : 5075 5081.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5075-5081
    • Ansede, J.H.1    Pellechia, P.J.2    Yoch, D.C.3
  • 4
    • 0031953244 scopus 로고    scopus 로고
    • The folate branch of the methionine biosynthesis pathway in Streptomyces lividans: Disruption of the 5,10-methylenetetrahydrofolate reductase gene leads to methionine auxotrophy
    • Blanco, J., Coque, J.J.R. Martin, J.F. (1998) The folate branch of the methionine biosynthesis pathway in Streptomyces lividans: disruption of the 5,10-methylenetetrahydrofolate reductase gene leads to methionine auxotrophy. J Bacteriol 180 : 1586 1591.
    • (1998) J Bacteriol , vol.180 , pp. 1586-1591
    • Blanco, J.1    Coque, J.J.R.2    Martin, J.F.3
  • 5
    • 0021880980 scopus 로고
    • Bacterial BioVolume and Biomass Estimations
    • Bratbak, G. (1985) Bacterial BioVolume and Biomass Estimations. Appl Environ Microbiol 49 : 1488 1493.
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1488-1493
    • Bratbak, G.1
  • 6
    • 0023430343 scopus 로고
    • Dimethylthetin can substitute for glycine betaine as an osmoprotectant molecule for Escherichia coli
    • Chambers, S.T., Kunin, C.M., Miller, D. Hamada, A. (1987) Dimethylthetin can substitute for glycine betaine as an osmoprotectant molecule for Escherichia coli. J Bacteriol 169 : 4845 4847.
    • (1987) J Bacteriol , vol.169 , pp. 4845-4847
    • Chambers, S.T.1    Kunin, C.M.2    Miller, D.3    Hamada, A.4
  • 7
    • 4143056119 scopus 로고    scopus 로고
    • Biphenyl and benzoate metabolism in a genomic context: Outlining genome-wide metabolic networks in Burkholderia xenovorans LB400
    • Denef, V.J., Park, J., Tsoi, T.V., Rouillard, J.-M., Zhang, H., Wibbenmeyer, J.A., et al. (2004) Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol 70 : 4961 4970.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4961-4970
    • Denef, V.J.1    Park, J.2    Tsoi, T.V.3    Rouillard, J.-M.4    Zhang, H.5    Wibbenmeyer, J.A.6
  • 8
    • 21844455487 scopus 로고    scopus 로고
    • Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium
    • Ducey, T.F., Carson, M.B., Orvis, J., Stintzi, A.P. Dyer, D.W. (2005) Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium. J Bacteriol 187 : 4865 4874.
    • (2005) J Bacteriol , vol.187 , pp. 4865-4874
    • Ducey, T.F.1    Carson, M.B.2    Orvis, J.3    Stintzi, A.P.4    Dyer, D.W.5
  • 9
    • 0023729085 scopus 로고
    • A degradation pathway of propionate in Salmonella typhimurium LT-2
    • Fernandez-Briera, A. Garrido-Pertierra, A. (1988) A degradation pathway of propionate in Salmonella typhimurium LT-2. Biochimie 70 : 757 768.
    • (1988) Biochimie , vol.70 , pp. 757-768
    • Fernandez-Briera, A.1    Garrido-Pertierra, A.2
  • 10
    • 0041029935 scopus 로고    scopus 로고
    • Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class proteobacteria
    • González, J.M., Kiene, R.P. Moran, M.A. (1999) Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class proteobacteria. Appl Environ Microbiol 65 : 3810 3819.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3810-3819
    • González, J.M.1    Kiene, R.P.2    Moran, M.A.3
  • 12
    • 0141837820 scopus 로고    scopus 로고
    • Silicibacter pomeroyi sp. nov. & Roseovarius nubinhibens sp. nov., dimethylfulfoniopropionate-demethylating bacteria from marine environments
    • González, J.M., Covert, J.S., Whitman, W.B., Henriksen, J.R., Mayer, F., Scharf, B., et al. (2003) Silicibacter pomeroyi sp. nov. & Roseovarius nubinhibens sp. nov., dimethylfulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol 53 : 1261 1269.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1261-1269
    • González, J.M.1    Covert, J.S.2    Whitman, W.B.3    Henriksen, J.R.4    Mayer, F.5    Scharf, B.6
  • 13
    • 0019819815 scopus 로고
    • Succinate dehydrogenase - A comparative review
    • Hederstedt, L. Rutberg, L. (1981) Succinate dehydrogenase - a comparative review. Microbiol Rev 45 : 542 555.
    • (1981) Microbiol Rev , vol.45 , pp. 542-555
    • Hederstedt, L.1    Rutberg, L.2
  • 15
    • 0034020751 scopus 로고    scopus 로고
    • The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon
    • Hummerjohann, J., Laudenbach, S., Retey, J., Leisinger, T. Kertesz, M.A. (2000) The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon. J Bacteriol 182 : 2055 2058.
    • (2000) J Bacteriol , vol.182 , pp. 2055-2058
    • Hummerjohann, J.1    Laudenbach, S.2    Retey, J.3    Leisinger, T.4    Kertesz, M.A.5
  • 17
    • 0032834011 scopus 로고    scopus 로고
    • Dimethylsulfoniopropionate and methanethiol are important precursors of methionine and protein-sulfur in marine bacterioplankton
    • Kiene, R.P., Linn, L.J., Gonzalez, J., Moran, M.A. Bruton, J.A. (1999) Dimethylsulfoniopropionate and methanethiol are important precursors of methionine and protein-sulfur in marine bacterioplankton. Appl Environ Microbiol 65 : 4549 4558.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4549-4558
    • Kiene, R.P.1    Linn, L.J.2    Gonzalez, J.3    Moran, M.A.4    Bruton, J.A.5
  • 18
    • 0035827268 scopus 로고    scopus 로고
    • The catalytic mechanism of protein tyrosine phosphatases revisited
    • Kolmodin, K. Aqvist, J. (2001) The catalytic mechanism of protein tyrosine phosphatases revisited. FEBS Lett 498 : 208 213.
    • (2001) FEBS Lett , vol.498 , pp. 208-213
    • Kolmodin, K.1    Aqvist, J.2
  • 19
    • 0344222215 scopus 로고    scopus 로고
    • Determination of Bacterial Cell Dry Mass by Transmission Electron Microscopy and Densitometric Image Analysis
    • Loferer-Krößacher, M., Klima, J. Psenner, R. (1998) Determination of Bacterial Cell Dry Mass by Transmission Electron Microscopy and Densitometric Image Analysis. Appl Environ Microbiol 64 : 688 694.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 688-694
    • Loferer-Krößacher, M.1    Klima, J.2    Psenner, R.3
  • 20
    • 0036083412 scopus 로고    scopus 로고
    • Polyamine profile in the paralytic shellfish poison-producing alga Alexandrium minutum
    • Lu, Y.H. Hwang, D.-F. (2002) Polyamine profile in the paralytic shellfish poison-producing alga Alexandrium minutum. J Plankton Res 24 : 275 279.
    • (2002) J Plankton Res , vol.24 , pp. 275-279
    • Lu, Y.H.1    Hwang, D.-F.2
  • 23
    • 0036190355 scopus 로고    scopus 로고
    • The DMSO reductase family of microbial molybdenum enzymes; Molecular properties and role in the dissimilatory reduction of toxic elements
    • McEwan, A.G., Ridge, J.P., McDevitt, C.A. Hugenholtz, P. (2002) The DMSO reductase family of microbial molybdenum enzymes; Molecular properties and role in the dissimilatory reduction of toxic elements. Geomicrobiol J 19 : 3 21.
    • (2002) Geomicrobiol J , vol.19 , pp. 3-21
    • McEwan, A.G.1    Ridge, J.P.2    McDevitt, C.A.3    Hugenholtz, P.4
  • 24
    • 18944395885 scopus 로고    scopus 로고
    • A gene encoding 1-methionine γ-lyase is present in enterobacteriaceae family genomes: Identification and characterization of Citrobacter freundii 1-methionine γ-lyase
    • Manukhov, I.V., Mamaeva, D.V., Rastorguev, S.M., Faleev, N.G., Morozova, E.A., Demidkina, T.V. Zavilgelsky, G.B. (2005) A gene encoding 1-methionine γ-lyase is present in enterobacteriaceae family genomes: identification and characterization of Citrobacter freundii 1-methionine γ-lyase. J Bacteriol 187 : 3889 3893.
    • (2005) J Bacteriol , vol.187 , pp. 3889-3893
    • Manukhov, I.V.1    Mamaeva, D.V.2    Rastorguev, S.M.3    Faleev, N.G.4    Morozova, E.A.5    Demidkina, T.V.6    Zavilgelsky, G.B.7
  • 25
    • 17644418853 scopus 로고    scopus 로고
    • DNA microarray analysis of nitrogen fixation and Fe (III) reduction in Geobacter sulfurreducens
    • Methé, B.A., Webster, J., Nevin, K., Butler, J. Lovley, D.R. (2005) DNA microarray analysis of nitrogen fixation and Fe (III) reduction in Geobacter sulfurreducens. Appl Environ Microbiol 71 : 2530 2538.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2530-2538
    • Methé, B.A.1    Webster, J.2    Nevin, K.3    Butler, J.4    Lovley, D.R.5
  • 26
    • 2942627189 scopus 로고    scopus 로고
    • Dimethylsulfoniopropionate metabolism by Pfiesteria-associated Roseobacter spp
    • Miller, T.R. Belas, R. (2004) Dimethylsulfoniopropionate metabolism by Pfiesteria-associated Roseobacter spp. Appl Environ Microbiol 70 : 3383 3391.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3383-3391
    • Miller, T.R.1    Belas, R.2
  • 28
    • 0141794566 scopus 로고    scopus 로고
    • Linking a bacterial taxon to sulfur cycling in the sea: Studies of the marine roseobacter group
    • Moran, M.A., Gonzalez, J.M. Kiene, R.P. (2003) Linking a bacterial taxon to sulfur cycling in the sea: studies of the marine roseobacter group. Geomicrobiol J 20 : 375 388.
    • (2003) Geomicrobiol J , vol.20 , pp. 375-388
    • Moran, M.A.1    Gonzalez, J.M.2    Kiene, R.P.3
  • 29
    • 19944408938 scopus 로고    scopus 로고
    • Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
    • Moran, M.A., Buchan, A., Gonzalez, J.M., Heidelberg, J.F., Whitman, W.B., Kiene, R.P., et al. (2004) Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432 : 910 913.
    • (2004) Nature , vol.432 , pp. 910-913
    • Moran, M.A.1    Buchan, A.2    Gonzalez, J.M.3    Heidelberg, J.F.4    Whitman, W.B.5    Kiene, R.P.6
  • 30
    • 0041423494 scopus 로고    scopus 로고
    • Spatial and temporal variations in free polyamine distributions in Uranouchi Inlet, Japan
    • Nishibori, N., Matuyama, Y., Uchida, T., Moriyama, T., Ogita, Y., Oda, M. Hirota, H. (2003) Spatial and temporal variations in free polyamine distributions in Uranouchi Inlet, Japan. Mar Chem 82 : 307 314.
    • (2003) Mar Chem , vol.82 , pp. 307-314
    • Nishibori, N.1    Matuyama, Y.2    Uchida, T.3    Moriyama, T.4    Ogita, Y.5    Oda, M.6    Hirota, H.7
  • 31
    • 3042731015 scopus 로고    scopus 로고
    • Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: Transcriptome flexibility at diverse growth modes
    • Pappas, C.T., Sram, J., Moskvin, O.V., Ivanov, P.S., MacKenzie, R.C., Choudhary, M., et al. (2004) Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modes. J Bacteriol 186 : 4748 4758.
    • (2004) J Bacteriol , vol.186 , pp. 4748-4758
    • Pappas, C.T.1    Sram, J.2    Moskvin, O.V.3    Ivanov, P.S.4    MacKenzie, R.C.5    Choudhary, M.6
  • 32
    • 0031395502 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
    • Rappe, M.S., Kemp, P.F. Giovannoni, S.J. (1997) Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol Oceanogr 42 : 811 826.
    • (1997) Limnol Oceanogr , vol.42 , pp. 811-826
    • Rappe, M.S.1    Kemp, P.F.2    Giovannoni, S.J.3
  • 33
    • 0035957317 scopus 로고    scopus 로고
    • ClpA mediates directional translocation of substrate proteins into the ClpP protease
    • Reid, B.G., Fenton, W.A., Horwich, A.L. Weber-Ban, E.U. (2001) ClpA mediates directional translocation of substrate proteins into the ClpP protease. Proc Natl Acad Sci USA 98 : 3768 3772.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 3768-3772
    • Reid, B.G.1    Fenton, W.A.2    Horwich, A.L.3    Weber-Ban, E.U.4
  • 34
    • 0037384574 scopus 로고    scopus 로고
    • Global gene expression in Escherichia coli biofilms
    • Schembri, M.A., Kjaergaard, K. Klemm, P. (2003) Global gene expression in Escherichia coli biofilms. Mol Microbiol 48 : 253 267.
    • (2003) Mol Microbiol , vol.48 , pp. 253-267
    • Schembri, M.A.1    Kjaergaard, K.2    Klemm, P.3
  • 35
  • 36
    • 0036159143 scopus 로고    scopus 로고
    • Coupled dynamics of dimethylsulfoniopropionate and dimethylsulfide cycling and the microbial food web in surface waters of the north atlantic
    • Simo, R., Archer, S.D., Pedros-Alio, C., Gilpin, L. Stelfox-Widdicombe, C.E. (2002) Coupled dynamics of dimethylsulfoniopropionate and dimethylsulfide cycling and the microbial food web in surface waters of the north atlantic. Limnol Oceanogr 47 : 53 61.
    • (2002) Limnol Oceanogr , vol.47 , pp. 53-61
    • Simo, R.1    Archer, S.D.2    Pedros-Alio, C.3    Gilpin, L.4    Stelfox-Widdicombe, C.E.5
  • 37
    • 0028878784 scopus 로고
    • Purification and characterization of dimethylsulfoniopropionate lyase from an alcaligenes-like dimethyl sulfide-producing marine isolate
    • de Souza, M. Yoch, D. (1995) Purification and characterization of dimethylsulfoniopropionate lyase from an alcaligenes-like dimethyl sulfide-producing marine isolate. Appl Environ Microbiol 61 : 21 26.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 21-26
    • De Souza, M.1    Yoch, D.2
  • 38
    • 0034947755 scopus 로고    scopus 로고
    • A critical compilation of Henry's law constant temperature dependence relations for organic compounds in dilute aqueous solutions
    • Staudinger, J. Roberts, P.V. (2001) A critical compilation of Henry's law constant temperature dependence relations for organic compounds in dilute aqueous solutions. Chemosphere 44 : 561 576.
    • (2001) Chemosphere , vol.44 , pp. 561-576
    • Staudinger, J.1    Roberts, P.V.2
  • 39
    • 0033828996 scopus 로고    scopus 로고
    • Physiological aspects of the production and conversion of DMSP in marine algae and higher plants
    • Stefels, J. (2000) Physiological aspects of the production and conversion of DMSP in marine algae and higher plants. J Sea Res 43 : 183 197.
    • (2000) J Sea Res , vol.43 , pp. 183-197
    • Stefels, J.1
  • 40
    • 0032542349 scopus 로고    scopus 로고
    • Partial characterisation of dimethylsulfoniopropionate (DMSP) lyase isozymes in 6 strains of Emiliania huxleyi
    • Steinke, M., Wolfe, G.V. Kirst, G.O. (1998) Partial characterisation of dimethylsulfoniopropionate (DMSP) lyase isozymes in 6 strains of Emiliania huxleyi. Mar Ecol Prog Ser 175 : 215 225.
    • (1998) Mar Ecol Prog Ser , vol.175 , pp. 215-225
    • Steinke, M.1    Wolfe, G.V.2    Kirst, G.O.3
  • 41
    • 0037130223 scopus 로고    scopus 로고
    • An antioxidant function for DMSP and DMS in marine algae
    • Sunda, W., Kieber, D.J., Kiene, R.P. Huntsman, S. (2002) An antioxidant function for DMSP and DMS in marine algae. Nature 418 : 317 320.
    • (2002) Nature , vol.418 , pp. 317-320
    • Sunda, W.1    Kieber, D.J.2    Kiene, R.P.3    Huntsman, S.4
  • 43
    • 0026580047 scopus 로고
    • Clostridium neopropionicum sp. nov., a strict anaerobic bacterium fermenting ethanol to propionate through acrylate pathway
    • Tholozan, J.L., Touzel, J.P., Samain, E., Grivet, J.P., Prensier, G. Albagnac, G. (1992) Clostridium neopropionicum sp. nov., a strict anaerobic bacterium fermenting ethanol to propionate through acrylate pathway. Arch Microbiol 157 : 249 257.
    • (1992) Arch Microbiol , vol.157 , pp. 249-257
    • Tholozan, J.L.1    Touzel, J.P.2    Samain, E.3    Grivet, J.P.4    Prensier, G.5    Albagnac, G.6
  • 44
    • 33846820411 scopus 로고    scopus 로고
    • Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria
    • Todd, J.D., Rogers, R., Li, Y.G., Wexler, M., Bond, P.L., Sun, L., et al. (2007) Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria. Science 315 : 666 669.
    • (2007) Science , vol.315 , pp. 666-669
    • Todd, J.D.1    Rogers, R.2    Li, Y.G.3    Wexler, M.4    Bond, P.L.5    Sun, L.6
  • 45
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to ionizing radiation response
    • Tusher, V., Tibshirani, R. Chu, C. (2001) Significance analysis of microarrays applied to ionizing radiation response. Proc Natl Acad Sci USA 98 : 5116 5121.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.1    Tibshirani, R.2    Chu, C.3
  • 48
    • 0030764580 scopus 로고    scopus 로고
    • Grazing-activated chemical defence in a unicellular marine alga
    • Wolfe, G.V. Steinke, M. (1997) Grazing-activated chemical defence in a unicellular marine alga. Nature 387 : 894.
    • (1997) Nature , vol.387 , pp. 894
    • Wolfe, G.V.1    Steinke, M.2
  • 49
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J. Speed, T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30 : e15.
    • (2002) Nucleic Acids Res , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 50
    • 0036952070 scopus 로고    scopus 로고
    • Dimethylsulfoniopropionate: Its sources, role in the marine food web, and biological degradation to dimethylsulfide
    • Yoch, D.C. (2002) Dimethylsulfoniopropionate: its sources, role in the marine food web, and biological degradation to dimethylsulfide. Appl Environ Microbiol 68 : 5804 5815.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5804-5815
    • Yoch, D.C.1
  • 51
    • 0035214934 scopus 로고    scopus 로고
    • Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulfoniopropionate in an algal bloom in the North Sea
    • Zubkov, M.V., Fuchs, B.M., Archer, S.D., Kiene, R.P., Amann, R. Burkill, P.H. (2001) Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulfoniopropionate in an algal bloom in the North Sea. Environ Microbiol 3 : 304 311.
    • (2001) Environ Microbiol , vol.3 , pp. 304-311
    • Zubkov, M.V.1    Fuchs, B.M.2    Archer, S.D.3    Kiene, R.P.4    Amann, R.5    Burkill, P.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.