-
1
-
-
0030786486
-
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
-
R. Agarwala, S. Batzoglou, V. Dancik, SE. Decatur , S. Hannenhalli, M. Farach, M. Muthukrishnan, S. Skiena, Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. Journal of Computational Biology 4: 275-296, 1997.
-
(1997)
Journal of Computational Biology
, vol.4
, pp. 275-296
-
-
Agarwala, R.1
Batzoglou, S.2
Dancik, V.3
Decatur, S.E.4
Hannenhalli, S.5
Farach, M.6
Muthukrishnan, M.7
Skiena, S.8
-
2
-
-
0037507851
-
Planar Separator
-
N. Alon, P. Seymour, and R. Thomas, Planar Separator, SIAM J. Discr. Math. 7,2(1990) 184-193.
-
(1990)
SIAM J. Discr. Math.
, vol.7
, Issue.2
, pp. 184-193
-
-
Alon, N.1
Seymour, P.2
Thomas, R.3
-
3
-
-
84957682501
-
Constraint techniques for solving the protein structure prediction problem
-
Proceedings of 4th International conference on principle and practice of constrain programming, Springer-Verlag
-
R. Backofen, Constraint techniques for solving the protein structure prediction problem, Proceedings of 4th International conference on principle and practice of constrain programming, 1998, Lecture Notes in Computer Science, 72-86, Springer-Verlag.
-
(1998)
Lecture Notes in Computer Science
, pp. 72-86
-
-
Backofen, R.1
-
4
-
-
0031897962
-
Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete
-
B. Berger and T. Leighton, Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete, Journal of Computational Biology, 5(1998), 27-40.
-
(1998)
Journal of Computational Biology
, vol.5
, pp. 27-40
-
-
Berger, B.1
Leighton, T.2
-
5
-
-
0019001660
-
On the prediction of. protein structure: The significance of the root-mean-square deviation
-
F. E. Cohen and M. J. E. Sternberg, On the prediction of. protein structure: the significance of the root-mean-square deviation, J. Mol. Biol., 138(1980), 321-333.
-
(1980)
J. Mol. Biol.
, vol.138
, pp. 321-333
-
-
Cohen, F.E.1
Sternberg, M.J.E.2
-
6
-
-
0031721615
-
On the complexity of protein folding
-
P. Crescenzi and D. Goldman and C. Papadimitriou and A. Piccolboni and M. Yannakakis, On the complexity of protein folding, Journal of computational biology, 5(1998), 423-465.
-
(1998)
Journal of Computational Biology
, vol.5
, pp. 423-465
-
-
Crescenzi, P.1
Goldman, D.2
Papadimitriou, C.3
Piccolboni, A.4
Yannakakis, M.5
-
7
-
-
0032126523
-
Testing a new Monte Carlo algorithm for protein folding
-
U. Bastolla, H. Frauenkron, E. Gerstner, P. Grassberger, and Nadler, Testing a new Monte Carlo algorithm for protein folding, Protein: Structure, Function, and Genetics, 32(1998), 52-66.
-
(1998)
Protein: Structure, Function, and Genetics
, vol.32
, pp. 52-66
-
-
Bastolla, U.1
Frauenkron, H.2
Gerstner, E.3
Grassberger, P.4
Nadler5
-
8
-
-
0027504807
-
Regularities in interaction patterns of globular proteins
-
A. Godzik and J. Skolnick and A. Kolinski, Regularities in interaction patterns of globular proteins, Protein Engineering, 6(1993), 801-810.
-
(1993)
Protein Engineering
, vol.6
, pp. 801-810
-
-
Godzik, A.1
Skolnick, J.2
Kolinski, A.3
-
9
-
-
0026726481
-
A topology fingerprint approach to inverse protein folding problem
-
A. Godzik and J. Skonick and A. Kolinski, A topology fingerprint approach to inverse protein folding problem, J. Mol. Biol., 227(1992), 227-238.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 227-238
-
-
Godzik, A.1
Skonick, J.2
Kolinski, A.3
-
11
-
-
0029785147
-
Mapping the protein universe
-
L. Holm and C. Sander, Mapping the protein universe, Science, 273(1996), 595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.1
Sander, C.2
-
12
-
-
0005864682
-
Protein structure prediction as a hard optimization problem: The genetic algorithm approach
-
M. Khimasia and P.Coveney, Protein structure prediction as a hard optimization problem: The genetic algorithm approach, In Molecular Simulation, 19(1997), 205-226.
-
(1997)
Molecular Simulation
, vol.19
, pp. 205-226
-
-
Khimasia, M.1
Coveney, P.2
-
13
-
-
0009697032
-
Genetic algorithms for the protein folding problem: A critical view
-
C.F.E. Alpaydin, editor, ICSC Academic Press
-
N. Krasnogor, D. Pelta, P.M. Lopez, P.Mocciola, and E. De la Canal, Genetic algorithms for the protein folding problem: A critical view, In C.F.E. Alpaydin, editor, Proceedings of Engineering of Intelligent Systems. ICSC Academic Press, 1998.
-
(1998)
Proceedings of Engineering of Intelligent Systems
-
-
Krasnogor, N.1
Pelta, D.2
Lopez, P.M.3
Mocciola, P.4
De La Canal, E.5
-
14
-
-
0024750637
-
A lattice statistical mechanics model of the conformational and sequence spaces of proteins
-
K. F. Lau and K. A. Dill, A lattice statistical mechanics model of the conformational and sequence spaces of proteins, Macromolecules, 22(1989), 3986-3997.
-
(1989)
Macromolecules
, vol.22
, pp. 3986-3997
-
-
Lau, K.F.1
Dill, K.A.2
-
15
-
-
0025101549
-
Theory for protein mutability and biogenesis
-
K. F. Lau and K. A. Dill, Theory for protein mutability and biogenesis, Proc. Natl. Acad. Sci, 87(1990), 638-642.
-
(1990)
Proc. Natl. Acad. Sci
, vol.87
, pp. 638-642
-
-
Lau, K.F.1
Dill, K.A.2
-
16
-
-
0018457301
-
A separator theorem for planar graph
-
R. J. Lipton and R. Tarjan, A separator theorem for planar graph, SIAM J. Appl. Math. 36(1979) 177-189.
-
(1979)
SIAM J. Appl. Math.
, vol.36
, pp. 177-189
-
-
Lipton, R.J.1
Tarjan, R.2
-
17
-
-
0035880733
-
Evolutionary Monte Carlo for Protein folding simulations
-
F. Liang and W.H. Wong, Evolutionary Monte Carlo for Protein folding simulations, Journal of Chemical Physics, 115,7(2001), 3374-3380.
-
(2001)
Journal of Chemical Physics
, vol.115
, Issue.7
, pp. 3374-3380
-
-
Liang, F.1
Wong, W.H.2
-
19
-
-
0011484346
-
A standard ga approach to native protein conformation prediction
-
Morgan Kauffman
-
A. Patton, W.P.III, and E. Goldman, A standard ga approach to native protein conformation prediction, In Proc 6th Intl Conf Genetic Algorithms, Morgan Kauffman, 1995, 574-581.
-
(1995)
Proc 6th Intl Conf Genetic Algorithms
, pp. 574-581
-
-
Patton, A.1
P. III, W.2
Goldman, E.3
-
21
-
-
35048833428
-
Application of evolutionary algorithms to protein prediction
-
N. e. a. Kasabov, editor, Springer
-
A. Piccolboni and G. Mauri, Application of evolutionary algorithms to protein prediction, In N. e. a. Kasabov, editor, Proceedings of I-CONIP'97, Springer, 1998.
-
(1998)
Proceedings of I-CONIP'97
-
-
Piccolboni, A.1
Mauri, G.2
-
22
-
-
0029786785
-
Improved genetic algorithm for the protein folding problem by use of a cartesian combination operator
-
A.A. Rabow and H.A. Scheraga, Improved genetic algorithm for the protein folding problem by use of a cartesian combination operator. Protein Science, 5(1996), 1800-1815.
-
(1996)
Protein Science
, vol.5
, pp. 1800-1815
-
-
Rabow, A.A.1
Scheraga, H.A.2
-
23
-
-
0001437596
-
A dynamic Monte Carlo algorithm for exploration of dense conformation spaces in heteropolymers
-
R. Ramakrishnan, B. Ramachandran, and J.F. Pekney, A dynamic Monte Carlo algorithm for exploration of dense conformation spaces in heteropolymers, Journal of Chemical Physics, 106(1997), 2418.
-
(1997)
Journal of Chemical Physics
, vol.106
, pp. 2418
-
-
Ramakrishnan, R.1
Ramachandran, B.2
Pekney, J.F.3
-
24
-
-
0032306359
-
Application of geometric separator theorems
-
W. D. Smith and N. C. Wormald, Application of geometric separator theorems, FOCS 1998, 232-243.
-
(1998)
FOCS
, pp. 232-243
-
-
Smith, W.D.1
Wormald, N.C.2
-
25
-
-
0028174310
-
How does a protein fold?
-
A. Sali, E. Shakhnovich, M. Karplus, How does a protein fold? Nature, 369(1994), 248-251.
-
(1994)
Nature
, vol.369
, pp. 248-251
-
-
Sali, A.1
Shakhnovich, E.2
Karplus, M.3
-
26
-
-
1642289227
-
A Genetic algorithm for three dimensional protein folding simulations
-
U. Unger and J. Moult, A Genetic algorithm for three dimensional protein folding simulations, In Proc 5th Intl Conf on Genetic Algorithms, 1993, 581-588.
-
(1993)
Proc 5th Intl Conf on Genetic Algorithms
, pp. 581-588
-
-
Unger, U.1
Moult, J.2
-
27
-
-
0027245418
-
Genetic algorithms for protein folding simulations
-
U. Unger and J. Moult, Genetic algorithms for protein folding simulations, Journal of Molecular Biology, 1993, 231(1),75-81
-
(1993)
Journal of Molecular Biology
, vol.231
, Issue.1
, pp. 75-81
-
-
Unger, U.1
Moult, J.2
-
28
-
-
0001747878
-
Sequence-structure relationships in proteins and copolymers
-
K. Yue and K. A. Dill, Sequence-structure relationships in proteins and copolymers, Physical Review E48(1993), 2267-2278.
-
(1993)
Physical Review
, vol.E48
, pp. 2267-2278
-
-
Yue, K.1
Dill, K.A.2
|