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Volumn 3005, Issue , 2004, Pages 113-122

Multiple sequence alignment using SAGA: Investigating the effects of operator scheduling, population seeding, and crossover operators

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; EVOLUTIONARY ALGORITHMS; MOLECULAR BIOLOGY; PROBLEM SOLVING;

EID: 35048882534     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-24653-4_12     Document Type: Article
Times cited : (12)

References (13)
  • 1
    • 0029366816 scopus 로고
    • Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment
    • Gupta, S., J.D. Kececioglu, J., Schaffer, A.: Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment. Journal of Computational Biology 2 (1995) 459-472
    • (1995) Journal of Computational Biology , vol.2 , pp. 459-472
    • Gupta, S.1    Kececioglu, J.D.2    Schaffer, A.3
  • 2
    • 0028679709 scopus 로고
    • On the complexity of multiple sequence alignment
    • Wang, L., Jiang, T.: On the complexity of multiple sequence alignment. Journal of Computational Biology 1 (1994) 337-348
    • (1994) Journal of Computational Biology , vol.1 , pp. 337-348
    • Wang, L.1    Jiang, T.2
  • 3
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting
    • Thompson, J., Higgins, D., Gibson, T.: Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 4
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng, D., Doolittle, R.: Progressive sequence alignment as a prerequisite to correct phylogenetic trees. Journal of Molecular Evolution 25 (1987) 351-360
    • (1987) Journal of Molecular Evolution , vol.25 , pp. 351-360
    • Feng, D.1    Doolittle, R.2
  • 6
    • 0029872694 scopus 로고    scopus 로고
    • SAGA: Sequence alignment by genetic algorithm
    • Notredame, C., Higgins, D.: SAGA: Sequence alignment by genetic algorithm. Nucleic Acids Research 24 (1996) 1515-1524
    • (1996) Nucleic Acids Research , vol.24 , pp. 1515-1524
    • Notredame, C.1    Higgins, D.2
  • 10
    • 0032988850 scopus 로고    scopus 로고
    • BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs
    • Thompson, J., Plewniak, F., Poch, O.: BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics 15 (1999) 87-88
    • (1999) Bioinformatics , vol.15 , pp. 87-88
    • Thompson, J.1    Plewniak, F.2    Poch, O.3
  • 12
    • 0031829993 scopus 로고    scopus 로고
    • COFFEE: An objective function for multiple sequence alignments
    • Notredame, C., Holm, L., Higgins, D.: COFFEE: An objective function for multiple sequence alignments. Bioinformatics 14 (1998) 407-422
    • (1998) Bioinformatics , vol.14 , pp. 407-422
    • Notredame, C.1    Holm, L.2    Higgins, D.3
  • 13
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame, C., Higgins, D., Heringa, J.: T-Coffee: A novel method for fast and accurate multiple sequence alignment. Journal of Molecular Biology 302 (2000) 205-217
    • (2000) Journal of Molecular Biology , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.2    Heringa, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.