-
1
-
-
0038203926
-
Faster exact algorithms for hard problems: A parameterized point of view
-
J. Alber, Gramm J., and R. Niedermeier. Faster exact algorithms for hard problems: a parameterized point of view. Disc. Math., 229:3-27, 2001.
-
(2001)
Disc. Math.
, vol.229
, pp. 3-27
-
-
Alber, J.1
Gramm, J.2
Niedermeier, R.3
-
2
-
-
0006683426
-
Maximum agreement subtree in a set of evolutionary trees: Metrics and efficient algorithm
-
A. Amir and D. Keselman. Maximum agreement subtree in a set of evolutionary trees: metrics and efficient algorithm. SIAM J. on Comp., 26(3):1656-1669, 1997.
-
(1997)
SIAM J. on Comp.
, vol.26
, Issue.3
, pp. 1656-1669
-
-
Amir, A.1
Keselman, D.2
-
3
-
-
0002844544
-
Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
-
B.R. Baum. Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees. Taxon, 41:3-10, 1992.
-
(1992)
Taxon
, vol.41
, pp. 3-10
-
-
Baum, B.R.1
-
4
-
-
0027308413
-
Efficient probabilistically checkable proofs and applications to approximations
-
M. Bellare, S. Goldwasser, C. Lund, and A. Russeli. Efficient probabilistically checkable proofs and applications to approximations. In Proceedings of the Twenty-Fifth Annual A.C.M. Symposium on Theory of Computing, pages294-304, 1993.
-
(1993)
Proceedings of the Twenty-Fifth Annual A.C.M. Symposium on Theory of Computing
, pp. 294-304
-
-
Bellare, M.1
Goldwasser, S.2
Lund, C.3
Russeli, A.4
-
6
-
-
0032148631
-
Properties of matrix representation with parsimony analyses
-
O.R.P. Bininda-Edmonds and H.N. Bryant. Properties of matrix representation with parsimony analyses. Syst. Biol., 47:497-508, 1998.
-
(1998)
Syst. Biol.
, vol.47
, pp. 497-508
-
-
Bininda-Edmonds, O.R.P.1
Bryant, H.N.2
-
7
-
-
0036931408
-
The (super)tree of life: Procedures, problems, and prospects
-
O.R.P. Bininda-Edmonds, J.L. Gittleman, and M.A. Steel. The (super)tree of life: procedures, problems, and prospects. Ann. Rev. Ecol. Syst., 2002.
-
(2002)
Ann. Rev. Ecol. Syst.
-
-
Bininda-Edmonds, O.R.P.1
Gittleman, J.L.2
Steel, M.A.3
-
8
-
-
0035527411
-
Assessment of the accuracy of matrix representation with parsimony analysis supertree construction
-
O.R.P. Bininda-Edmonds and M.J. Sanderson. Assessment of the accuracy of matrix representation with parsimony analysis supertree construction. Syst. Biol., 50(4):565-579, 2001.
-
(2001)
Syst. Biol.
, vol.50
, Issue.4
, pp. 565-579
-
-
Bininda-Edmonds, O.R.P.1
Sanderson, M.J.2
-
10
-
-
58149210897
-
Extension operations on sets of leaf-labelled trees
-
D. Bryant and M.A. Steel. Extension operations on sets of leaf-labelled trees. Adv. Appl. Math., 16:425-453, 1995.
-
(1995)
Adv. Appl. Math.
, vol.16
, pp. 425-453
-
-
Bryant, D.1
Steel, M.A.2
-
11
-
-
0041599373
-
Flipping: A supertree construction method
-
D. Chen, L. Diao, O. Eulenstein, and D. Fernandez-Baca. Flipping: a supertree construction method. DIMACS Series in Disc. Math. and Theor. Comp. Sci., 61:135-160, 2003.
-
(2003)
DIMACS Series in Disc. Math. and Theor. Comp. Sci.
, vol.61
, pp. 135-160
-
-
Chen, D.1
Diao, L.2
Eulenstein, O.3
Fernandez-Baca, D.4
-
12
-
-
0035189546
-
An O(n log n) algorithm for the maximum agreement subtree problem for binary trees
-
R. Cole, M. Farach, R. Hartigan, Przytycka T., and M. Thorup. An O(n log n) algorithm for the maximum agreement subtree problem for binary trees. SIAM J. on Computing, 30(5):1385-1404, 2001.
-
(2001)
SIAM J. on Computing
, vol.30
, Issue.5
, pp. 1385-1404
-
-
Cole, R.1
Farach, M.2
Hartigan, R.3
Przytycka, T.4
Thorup, M.5
-
15
-
-
0006643131
-
Agreement of many bounded degree evolutionary trees
-
M. Farach, T. Przytycka, and M. Thorup. Agreement of many bounded degree evolutionary trees. Inf. Proc. Letters, 55(6):297-301, 1995.
-
(1995)
Inf. Proc. Letters
, vol.55
, Issue.6
, pp. 297-301
-
-
Farach, M.1
Przytycka, T.2
Thorup, M.3
-
16
-
-
84959037630
-
Finding a maximum compatible tree for a bounded number of trees with bounded degree is solvable in polynomial time
-
O. Gascuel and B.M.E. Moret, editors, LNCS
-
G. Ganapathysaravanabavan and T. Warnow. Finding a maximum compatible tree for a bounded number of trees with bounded degree is solvable in polynomial time. In O. Gascuel and B.M.E. Moret, editors, Proc. of the Workshop on Algorithms for Bioinformatics (WABI'01), volume 2149 of LNCS, pages 156-163, 2001.
-
(2001)
Proc. of the Workshop on Algorithms for Bioinformatics (WABI'01)
, vol.2149
, pp. 156-163
-
-
Ganapathysaravanabavan, G.1
Warnow, T.2
-
17
-
-
0043045976
-
On the complexity of constructing evolutionary trees
-
L. Gasieniec, J. Jansson, A. Lingas, and A. Ostlin. On the complexity of constructing evolutionary trees. J. of Combin. Optim., 3:183-197, 1999.
-
(1999)
J. of Combin. Optim.
, vol.3
, pp. 183-197
-
-
Gasieniec, L.1
Jansson, J.2
Lingas, A.3
Ostlin, A.4
-
18
-
-
0000803938
-
Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labelled leaves
-
A.G. Gordon. Consensus supertrees: the synthesis of rooted trees containing overlapping sets of labelled leaves. J. of Classif., 3:335-346, 1986.
-
(1986)
J. of Classif.
, vol.3
, pp. 335-346
-
-
Gordon, A.G.1
-
19
-
-
0041640265
-
Finding largest subtrees and smallest supertrees
-
A. Gupta and N. Nishimura. Finding largest subtrees and smallest supertrees. Algorithmica, 21(2):183-210, 1998.
-
(1998)
Algorithmica
, vol.21
, Issue.2
, pp. 183-210
-
-
Gupta, A.1
Nishimura, N.2
-
20
-
-
84987049379
-
Efficient algorithms for inferring evolutionary trees
-
D. Gusfield. Efficient algorithms for inferring evolutionary trees. Networks, 21:19-28, 1991.
-
(1991)
Networks
, vol.21
, pp. 19-28
-
-
Gusfield, D.1
-
21
-
-
0038875361
-
Finding a maximum compatible tree is NP-hard for sequences and trees
-
A.M. Hamel and M.A. Steel. Finding a maximum compatible tree is NP-hard for sequences and trees. Appl. Math. Lett., 9(2):55-59, 1996.
-
(1996)
Appl. Math. Lett.
, vol.9
, Issue.2
, pp. 55-59
-
-
Hamel, A.M.1
Steel, M.A.2
-
22
-
-
0021426157
-
Fast algorithms for finding nearest common ancestor
-
D. Harel and R.E. Tarjan. Fast algorithms for finding nearest common ancestor. Computer and System Science, 13:338-355, 1984.
-
(1984)
Computer and System Science
, vol.13
, pp. 338-355
-
-
Harel, D.1
Tarjan, R.E.2
-
23
-
-
0002291589
-
On the complexity of comparing evolutionary trees
-
J. Hein, T. Jiang, L. Wang, and Zhang K. On the complexity of comparing evolutionary trees. Disc. Appl. Math., 71:153-169, 1996.
-
(1996)
Disc. Appl. Math.
, vol.71
, pp. 153-169
-
-
Hein, J.1
Jiang, T.2
Wang, L.3
Zhang, K.4
-
25
-
-
84958038951
-
A decomposition theorem for maximum weight bipartite matchings with applications to evolutionary trees
-
Springer-Verlag, New York, NY
-
M.Y. Kao, T.W. Lam, W.K. Sung, and H.F. Ting. A decomposition theorem for maximum weight bipartite matchings with applications to evolutionary trees. In Proc. of the 8th Ann. Europ. Symp. Alg. (ESA), pages 438-449. Springer-Verlag, New York, NY, 1999.
-
(1999)
Proc. of the 8th Ann. Europ. Symp. Alg. (ESA)
, pp. 438-449
-
-
Kao, M.Y.1
Lam, T.W.2
Sung, W.K.3
Ting, H.F.4
-
26
-
-
0347752674
-
An even faster and more unifying algorithm for comparing trees via unbalanced bipartite matchings
-
M.Y. Kao, T.W. Lam, W.K. Sung, and H.F. Ting. An even faster and more unifying algorithm for comparing trees via unbalanced bipartite matchings. J. of Algo., 40:212-233, 2001.
-
(2001)
J. of Algo.
, vol.40
, pp. 212-233
-
-
Kao, M.Y.1
Lam, T.W.2
Sung, W.K.3
Ting, H.F.4
-
28
-
-
84956992917
-
Modified mincut supertrees
-
O. Gascuel and M.-F. Sagot, editors, LNCS, Springer-Verlag
-
R. Page. Modified mincut supertrees. In O. Gascuel and M.-F. Sagot, editors, Proc. of the Workshop on Algorithms for Bioinformatics (WABI'02), LNCS, pages 538-551. Springer-Verlag, 2002.
-
(2002)
Proc. of the Workshop on Algorithms for Bioinformatics (WABI'02)
, pp. 538-551
-
-
Page, R.1
-
29
-
-
0029495388
-
A modification to Baum and Ragan's method for combining phylogenetic trees
-
A. Purvis. A modification to Baum and Ragan's method for combining phylogenetic trees. Syst. Biol., 44:251-255, 1995.
-
(1995)
Syst. Biol.
, vol.44
, pp. 251-255
-
-
Purvis, A.1
-
30
-
-
0027104018
-
Matrix representation in reconstructing phylogenetic relationships among the eukaryots
-
M.A. Ragan. Matrix representation in reconstructing phylogenetic relationships among the eukaryots. Biosystems, 28:47-55, 1992.
-
(1992)
Biosystems
, vol.28
, pp. 47-55
-
-
Ragan, M.A.1
-
31
-
-
0030311386
-
Matrix representation of trees, redundancy, and weighting
-
F. Ronquist. Matrix representation of trees, redundancy, and weighting. Syst. Biol. 45:247-253, 1996.
-
(1996)
Syst. Biol.
, vol.45
, pp. 247-253
-
-
Ronquist, F.1
-
32
-
-
0001541744
-
A supertree method for rooted trees
-
C. Semple and M.A. Steel. A supertree method for rooted trees. Disc. Appl. Math., 105:147-158, 2000.
-
(2000)
Disc. Appl. Math.
, vol.105
, pp. 147-158
-
-
Semple, C.1
Steel, M.A.2
-
33
-
-
0027912455
-
Kaikoura tree theorems: Computing the maximum agreement subtree
-
M.A. Steel and T. Warnow. Kaikoura tree theorems: Computing the maximum agreement subtree. Information Processing Letters, 48:77-82, 1993.
-
(1993)
Information Processing Letters
, vol.48
, pp. 77-82
-
-
Steel, M.A.1
Warnow, T.2
-
34
-
-
1642478458
-
A view of supertrees methods
-
Amer. Math. Soc. Pub.
-
J.L. Thorley and M. Wilkinson. A view of supertrees methods. In Bioconsensus, DIMACS, volume 61, pages 185-194. Amer. Math. Soc. Pub., 2003.
-
(2003)
Bioconsensus, DIMACS
, vol.61
, pp. 185-194
-
-
Thorley, J.L.1
Wilkinson, M.2
-
35
-
-
38149146221
-
Tree compatibility and inferring evolutionary history
-
T. J. Warnow. Tree compatibility and inferring evolutionary history. Journal of Algorithms, 16:388-407, 1994.
-
(1994)
Journal of Algorithms
, vol.16
, pp. 388-407
-
-
Warnow, T.J.1
-
36
-
-
0004126296
-
-
chapter 27, Towards a phylogenetic supertree of Platyhelminthes. Taylor and Francis, London
-
M. Wilkinson, J. Thorley, D.T.J. Littlewood, and R.A. Bray. Interrelationships of the Platyhelminthes, chapter 27, Towards a phylogenetic supertree of Platyhelminthes. Taylor and Francis, London, 2001.
-
(2001)
Interrelationships of the Platyhelminthes
-
-
Wilkinson, M.1
Thorley, J.2
Littlewood, D.T.J.3
Bray, R.A.4
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