PromSearch: A hybrid approach to human core-promoter prediction

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 3177, Issue , 2004, Pages 125-131

  Kim, Byoung Hee ^a   Park, Seong Bae ^a   Zhang, Byoung Tak ^a  

^a Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 35048825873     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-28651-6_18     Document Type: Article

References (10)

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3. Bucher, P.: Weight matrix description of four eukaryotic RNA polymerase II promotor elements derived from 502 unrelated promotor sequences. J Mol Biol., 212 563-578 1990.
4. Fickett, J. W., Hatzigeorgiou, A.G.: Eukaryotic Promoter Recognition. Genome Research, 7, 861-878, 1997.
5. Ohler, U.: Computational promoter recognition in eukaryotic genomic DNA, PhD thesis, Technische Fakultät Erlangen-Nürnbeg, 2001.
6. Scherf, M., Klingenhoff, A., Werner, T.: Highly specific localization of promoter regions in large genomic sequences by Promoterlnspector: a novel context analysis approach. J Mol Biol, 297, 599-606, 2000.
7. Schef, M., et al.: First Pass Annotation of Promoters on Human Chromosome 22. Genome Research, 11, 333-340, 2001.
8. Schmid, C.D., Praz, V., Delorenzi, M., Périer, R., Bucher, P.: The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. Nucleic Acids Res. 32, D82-5, 2004.
9. Suzuki, Y., Yamashita, R., Nakai, K., and Sugano, S.: DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res., 30, 328-331, 2002.
10. Wingender, E., et al.: The TRANSFAC system on gene expression regulation. Nucleic Acids Res., 29, 281-283, 2001.