Phylogeographic structure of the caridean shrimp Palaemon peringueyi in South Africa: Further evidence for intraspecific genetic units associated with marine biogeographic provinces

African Journal of Marine Science

Volumn 29, Issue 2, 2007, Pages 253-258

  Teske, P R ^a   Froneman, P W ^a   Barker, N P ^a   McQuaid, C D ^a  

^a RHODES UNIVERSITY   (South Africa)

Author keywords

Genetic drift; Larval retention; Mitochondrial DNA COI and 16S rRNA; Planktonic dispersal; Population size fluctuation; Rafting; Swimming

Indexed keywords

COASTAL ENGINEERING; MARINE BIOLOGY; RNA;

CLADISTICS; CRUSTACEAN; DISPERSAL; EVOLUTION; GENE FLOW; GENETIC DRIFT; MITOCHONDRIAL DNA; PHYLOGENY; PHYLOGEOGRAPHY;

AFRICA; SOUTH AFRICA; SOUTHERN AFRICA; SUB-SAHARAN AFRICA;

CARIDEAN; DECAPODA (CRUSTACEA); INVERTEBRATA; PALAEMON PERINGUEYI;

EID: 34948908620     PISSN: 1814232X     EISSN: None     Source Type: Journal    
DOI: 10.2989/AJMS.2007.29.2.9.192     Document Type: Article

References (58)

1. Akaike H (1973) Information theory as an extension of the maximum likelihood principle. In: Petrov BN, Csaki F (eds) Second International Symposium on Information Theory. Akademiai Kiado, Budapest, pp 267-281
2. Allan EL, Froneman PW, Hodgson AN (2006) Effects of temperature and salinity on the standard metabolic rate (SMR) of the caridean shrimp Palaemon peringueyi. Journal of Experimental Marine Biology and Ecology 337: 103-108
3. Ball AO, Chapman RW (2003) Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers. Molecular Ecology 12: 2319-2330
4. Barnard KH (1950) Descriptive catalogue of South African decapod Crustacea. Annals of the South African Museum 38: 1-837
5. Bernard ATF, Froneman PW (2005) Population dynamics of the caridean shrimp, Palaemeon peringeuyi, in a temperate, temporarily open closed southern African estuary. Estuarine, Coastal and Shelf Science 63: 73-81
6. Bolton JJ, Leliaert F, De Clerck O, Anderson RJ, Stegenga H, Engledow HE, Coppejans E (2004) Where is the western limit of the tropical Indian Ocean seaweed flora? An analysis of intertidal seaweed biogeography on the east coast of South Africa. Marine Biology 144: 51-59
7. Borrell Y, Espinosa G, Romo J, Blanco G, Vázquez E, Sánchez JA (2004) DNA microsatellite variability and genetic differentiation among natural populations of the Cuban white shrimp Litoppenaeus schmitti. Marine Biology 144: 327-333
8. Broekhuysen GJ, Taylor H (1959) The ecology of South African estuaries. VIII: Kosi Bay estuary system. Annals of the South African Museum 44: 279-296
9. Brooker AL, Benzie JAH, Blair D, Versini J-J (2000) Population structure of the giant tiger prawn Penaeus monodon in Australian waters, determined using microsatellite markers. Marine Biology 136: 149-157
10. Day JH (ed) (1974) A Guide to Marine Life on South African Shores. AA Balkema, Cape Town
11. de Villiers C, Hodgson AN, Forbes A (1999) Studies on estuarine macroinvertebrates. In: Allanson BR, Baird D (eds) Estuaries of South Africa. Cambridge University Press, UK, pp 167-208
12. Edkins MT, Teske PR, Papadopoulos I, Griffiths CL (2007) Morphological and genetic analyses suggest that southern African crown crabs, Hymenosoma orbiculare, represent five distinct species. Crustaceana 80: 667-683
13. Emanuel BP, Bustamante RH, Branch GM, Eekhout S, Odendaal FJ (1992) A zoogeographic and functional approach to the selection of marine reserves on the west coast of South Africa. In: Payne AIL, Brink KH, Mann KH, Hilborn R (eds) Benguela Trophic Functioning. South African Journal of Marine Science 12: 341-354
14. Emmerson WD (1983) Tidal exchange of two decapod larvae Palaemon pacificus (Caridea) and Upogebia africana (Thalassinidae) between the Swartkops River estuary and adjacent coastal waters. South African Journal of Zoology 18: 326-330
15. Emmerson WD (1985) Seasonal abundance, growth and reproduction of Palaemon pacificus (Stimpson) in eastern Cape tidal pools. South African Journal of Zoology 20: 221-231
16. Emmerson WD (1986) The ecology of Palaemon pacificus (Stimpson) associated with Zostera capensis. Transactions of the Royal Society of South Africa 46: 79-97
17. Evans BS, Sweijd NA, Bowie RCK, Cook PA, Elliott NG (2004) Population genetic structure of the perlemoen, Haliotis midae, in South Africa: evidence of range expansion and founder events. Marine Ecology Progress Series 270: 163-172
18. Froneman PW (2006) Population demographics of Palaemon peringueyi (Macpherson 1990) (Decapoda: Palaemonidae) in a small intermittently open Eastern Cape estuary. African Journal of Aquatic Science 31: 197-203
19. Harrison TD (2002) Preliminary assessment of the biogeography of fishes in South African estuaries. Marine and Freshwater Research 53: 479-490
20. Hasegawa M, Kishino K, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174
21. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755
22. Jackson LF (1976) Aspects of the intertidal ecology of the east coast of South Africa. Investigational Report of the Oceanographic Research Institute, Durban, South Africa 46: 1-72
23. Kingsford MJ, Choat JH (1985) The fauna associated with drift algae captured with a plankton-mesh purse seine net. Limnology and Oceanography 30: 618-630
24. Klopper AW (2005) Intraspecific genetic variation in the percoid teleosts Argyrosomus japonicus (Temminck and Schlegel, 1843) and Pomadasys commersonnii (Lacepède, 1801) as inferred from the mitochondrial control region. MSc thesis, University of Pretoria, South Africa
25. Macpherson E (1990) The validation of Palaemon peringueyi (Stebbing 1915) from South African waters and its relationships with Palaemon pacificus (Stimpson 1860) (Decapoda, Palaemonidae). Journal of Natural History 24: 627-634
26. Manent P, Abella-Gutiérrez J (2006) Population biology of Palaemon adspersus Rathke, 1837 (Decapoda, Caridea) in Fornells Bay, Balearic Islands, western Mediterranean. Crustaceana 79: 1297-1308
27. Marta-Almeida M, Dubert J, Peliz Á, Queiroga H (2006) Influence of vertical migration pattern on retention of crab larvae in a seasonal upwelling system. Marine Ecology Progress Series 307: 1-19
28. McMillen-Jackson AL, Bert TM (2003) Disparate patterns of population structure and population history in two sympatric penaeid species (Farfantepenaeus aztecus and Litopenaeus setiferus) in the eastern United States. Molecular Ecology 12: 2895-2905
29. McQuaid CD, Phillips TE (2000) Limited wind-driven dispersal of the intertidal mussel larvae: in situ evidence from the plankton and the spread of the invasive species Mytilus galloprovincialis in South Africa. Marine Ecology Progress Series 201: 211-220
30. Nakata Y (1987) Swimming posture of Palaemon paucidens against the water current. BA thesis, Kinki University, Japan
31. Norton OB (2005) The population structure of two estuarine fish species, Atherina breviceps (Pisces: Atherinidae) and Gilchristella aestuaria (Pisces: Clupeidae), along the southern African coastline. MSc thesis, Rhodes University, South Africa
32. Nylander JAA (2004) MRMODELTEST v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
33. Oosthuizen CJ (2006) lntraspecific genetic variation of the endemic estuarine-dependent sparid, Rhabdosargus holubi (Steindachner 1881). MSc thesis, University of Pretoria, South Africa
34. Palumbi SR (1996) Nucleic acids II: The polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK (eds) Molecular Systematics. Sinauer Associates, Sunderland, pp 205-247
35. Peterson W (1998) Life cycle strategies of copepods in coastal upwelling zones. Journal of Marine Systems 15: 313-326
36. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818
37. Queiroga H, Blanton J (2004) Interactions between behaviour and physical forcing in the control of horizontal transport of decapod crustacean larvae. Advances in Marine Biology 47: 107-214
38. Ridgway TM, Stewart BA, Branch GM, Hodgson AN (1998) Morphological and genetic differentiation of Patella granularis (Gastropoda: Patellidae): recognition of two sibling species along the coast of southern Africa. Journal of Zoology, London 245: 317-333
39. Salman SD, Page TJ, Naser MD, Yasser AG (2006) The invasion of Macrobrachium nipponense (de Haan, 1849) (Caridea: Palaemonidae) into southern Iraqui marshes. Aquatic Invasions 1: 109-115
40. Shanks AL (1986) Vertical migration and cross-shelf dispersal of larval Cancer spp. and Randallia ornata (Crustacea, Brachyura) off the coast of southern California. Marine Biology 92: 189-200
41. Siegfried CA (1980) Seasonal abundance and distribution of Crangon franciscorum and Palaemon macrodactylus (Decapoda, Caridea) in the San Francisco Bay-Delta. Biological Bulletin 159: 177-192
42. Stephenson TA, Stephenson A (eds) (1972) Life Between Tidemarks and Rocky Shores. WH Freeman, San Francisco
43. Swofford DL (2002) PAUP* - phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer Associates, Sunderland
44. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526
45. Teske PR, Barker NP, McQuaid CD (in press a) Lack of genetic differentiation among four sympatric southeast African intertidal limpets (Siphonariidae): phenotypic plasticity in a single species? Journal of Molluscen Studies
46. Teske PR, Cherry MI, Matthee CA (2004) The evolutionary history of seahorses (Syngnathidae: Hippocampus): molecular data suggest a West Pacific origin and two invasions of the Atlantic Ocean. Molecular Phylogenetics and Evolution 30: 273-286
47. Teske PR, McQuaid CD, Froneman PW, Barker NP (2006) Impacts of marine biogeographic boundaries on phylogeographic patterns of three South African estuarine crustaceans. Marine Ecology Progress Series 314: 283-293
48. Teske PR, Papadopoulos I, Zardi GI, McQuaid CD, Edkins MT, Griffiths CL, Barker NP (in press b) Implications of life history for genetic structure and migration rates of southern African coastal invertebrates: planktonic, abbreviated and direct development. Marine Biology
49. 31P NMR. Marine Ecology Progress Series 74: 175-183
50. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882
51. Turpie JK, Beckley LE, Katua SM (2000) Biogeography and the selection of priority areas for conservation of South African coastal fishes. Biological Conservation 92: 59-72
52. Valles-Jimenez R, Cruz P, Perez-Enriquez R (2005) Population genetic structure of the Pacific white shrimp (Liopenaeus vannamei) from Mexico to Panama: microsatellite DNA variation. Marine Biotechnology 6: 475-484
53. Weetman D, Ruggiero A, Mariani S, Shaw PW, Lawler AR, Hauser L (2007) Hierarchical population genetic structure in the commercially exploited shrimp Crangon crangon identified by AFLP analysis. Marine Biology 151: 565-575
54. Wehrtmann IS, Dittel AI (1990) Utilization of floating macroalgae leaves as a transport mechanism of estuarine organisms, with emphasis on decapod Crustacea. Marine Ecology Progress Series 60: 67-73
55. Whitfield AK (1994) An estuary-associated classification for the fishes of southern Africa. South African Journal of Science 90: 411-417
56. Wooldridge TH (1991) Exchange of two species of decapod larvae across an estuarine mouth inlet and implications of anthropogenic changes in the frequency and duration of mouth closure. South African Journal of Zoology 87: 519-525
57. Wooldridge T (1999) Estuarine Zooplankton. In: Allanson BR, Baird D (eds) Estuaries of South Africa. Cambridge University Press, UK, pp 167-208
58. Zardi GI, McQuaid CD, Teske PR, Barker NP (2007) Unexpected genetic structure of mussel populations in South Africa: indigenous Pema pema and invasive Mytilus galloprovincialis. Marine Ecology Progress Series 337: 135-144