Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses

Genes and Genetic Systems

Volumn 82, Issue 4, 2007, Pages 329-340

  Sasaki, Takeshi ^a   Kartavtsev, Yuri P ^b,c   Chiba, Satoru N ^d   Uematsu, Takayuki ^d   Sviridov, Vladimir V ^c   Hanzawa, Naoto ^d  

^a INSTITUTE OF STATISTICAL MATHEMATICS   (Japan)

^b INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

^c FAR EASTERN FEDERAL UNIVERSITY   (Russian Federation)

^d YAMAGATA UNIVERSITY   (Japan)

Author keywords

Cyprinids; Evolution; Far East; Mitochondrial DNA; Phylogeny

Indexed keywords

ANALYTIC METHOD; ARTICLE; CONTROLLED STUDY; CYPRINIFORMES; CYTOCHROME B GENE; DNA DETERMINATION; FISH; GENE; GENE SEQUENCE; GENETIC VARIABILITY; MAXIMUM LIKELIHOOD METHOD; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PSEUDASPIUS LEPTOCEPHALUS; TRIBOLODON;

AMINO ACID SEQUENCE; ANIMALS; CYPRINIDAE; CYTOCHROMES B; DNA, MITOCHONDRIAL; EUROPE; EVOLUTION; EVOLUTION, MOLECULAR; FAR EAST; FISHES; GENETIC SPECIATION; GEOGRAPHY; NORTH AMERICA; PHYLOGENY; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY; VARIATION (GENETICS);

CYPRINIDAE; LEUCISCINAE; MYA; PHOXINUS; PISCES; PSEUDASPIUS; PSEUDASPIUS LEPTOCEPHALUS; TRIBOLODON;

EID: 34948880768     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.82.329     Document Type: Article

References (58)

1. Agassiz, L. (1835) Description de quelques espèces de cyprins du Lac de Neuchâtel, qui sont encore inconnues aux naturalistes. Mem. Soc. Neuchatel. Sci. Nat. 1, 33-48.
2. Asahida, T., Kobayashi, T., Saitoh, K., and Nakayama, I. (1996) Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci. 62, 727-730.
3. Bogutskaya, N. G. (1990) Morphological basics in cyprinid fish of Leuciscinae subfamily (Leuciscinae, Cyprinidae). Voprosy Ichtiologii 30 (6), 920-933.
4. Bogutskaya, N. G., and Naseka, A. M. (1996) Cyclostomata and fishes of Khanka Lake drainage area (Amur river basin). In: An annotated check-list with comments on taxonomy and zoogeography of the region. Zool. Inst. Russ. Acad. Sci. St. Petersburg.
5. Briolay, J., Galtier, N., Brio, R. M., and Bouvey, Y. (1998) Molec ular phylogeny of Cyprinidae inferred from cytochrome b DNA sequences. Mol. Phylogenet. Evol. 9, 100-108.
6. Cavender, T. M., and Coburn, M. M. (1992) Phylogenetic relationships of North American cyprinid fishes. In: Systematics, historical ecology, and North American freshwater fishes (ed.: R. L. Mayden), pp. 293-327. Stanford Univ. Press, Stanford, CA.
7. Chereshnev, I. A. (1998) Biogeogrphy of freshwater fish fauna in the Russian Far East (in Russian). Dalnauka, Vladivostok.
8. Choi, K., Jeon, S., and Kim, I. (1984) The atlas of Korean freshwater fishes. Korean Institute of Fresh-water Biology, Seoul.
9. Cummings, M., Otto, P., and Wakeley, S. P. (1995) Sampling propertiies of DNA sequence data in phylogenetic analysis. Mol. Biol. Evol. 12, 814-822.
10. Cunha, C., Mesquita, N., Dowling, T. E., Gilles, A., and Coelho, M. M. (2002) Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences. J. Fish Biol. 61, 929-944.
11. Doi, A., and Shinzawa, H. (2000) Tribolodon nakamurai, a new cyprinid fish from the middle part of Honshu Island, Japan. Raffles Bull. Zool. 48, 241-247.
12. Durand, J. B., Tsigenopoulos, C. S., Ünlü, E., and Berrebi, P. (2002) Phylogeny and biogeography of the family Cyprinidae in the Middle East Inferred from cytochrome b DNA-evolutionary significance of this region. Mol. Phylogenet. Evol. 22, 91-100.
13. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
14. Frank, S. (1972) The pictorial encyclopedia of fishes. Hamlyn, London.
15. Fujita, T., and Hosoya, K. (2005) Cephalic lateral line systems in the Far Eastern species of the genus Phoxinus (Cyprinidae). Ichthyol. Res. 52, 336-342.
16. Günther, A. (1889) Third contribution to our knowridge of reptiles and fishes from the upper Yangtsze-Kiang. Ann. Mag. Nat. Hist. Ser.6, 4, 218-229.
17. Hänfling, B., and Brandl, R. (2000) Phylogenetics of European cyprinids: insights from allozymes. J. Fish Biol. 57, 265-276.
18. Hanzawa, N., and Taniguchi, N. (1982) Genetic differentiation of Japanese dace, genus Tribolodon, collected from the waters of Fukushima Prefecture. Fish Genet. Breed. Sci. 7, 26-30.
19. Hanzawa, N., Yonekawa, H., and Numachi, K. (1987) Variability of mitochondrial DNA in Japanese dace, Tribolodon hakonensis (Cyprinidae). Jpn. J. Genet. 62, 27-38.
20. Hanzawa N., Taniguchi, N., and Numachi, K. (1988) Geographical differentiation in populations of Japanese dace Tribolodon hakonensis deduced from allozymic variation. Zool. Sci. 5, 449-461.
21. Howes, G. J. (1985) A revised synonymy of the minnow genus Phoxinus Rafinesque, 1820 (Teleostei: Cyprinidae) with comments on its relationships and distribution. Bull. British Mus. Nat. Hist. (Zool) 48, 57-74.
22. Howes, G. J. (1991) Systematics and biogeography: an overview. In: Cyprinid Fishes: Systematics, biology and exploitation (Fish and Fisheries Series; 3) (eds Winfield, I. J. and Nelson, J. S.), pp. 1-33. Chapman and Hall; London, New York, Tokyo.
23. Hrbek, T., Stölting, K. N., Bardakci, F., Küçük, F., Wildekamp, R. H., and Meyer, A. (2004) Plate tectonics and biogeographical patterns of the the Pseudophoxinus (Pisces: Cypriniformes) species complex of central Anatolia, Turkey. Mol. Phylogenet. Evol. 32, 297-308.
24. Ichikawa, K., Fujita, Y., and Shimazu, M. (1970) Japanese Islands - history of geological structure. Tsukiji Shokan, Tokyo.
25. Ikeda, H. (1938) Statistical observations on the species of the genus Tribolodon in Japan and some notes on their distribution. Sci. Rep. Tokyo Bunrika Daigaku, Sec, B 3, 163-192.
26. Ito, Y., Sakai, H., Shedko, V. S., and Jeon, S. R. (2002) Genetic differentiation of the northern Far East cyprinids, Phoxinus and Rhynchocypris. Fish. Sci. 68, (suppl I), 75-78.
27. Kartavtsev, Y. P., Sviridov, V. V., Hanzawa, N., and Sasaki, T. (2002) Genetic divergence of Far-Eastern dace species belonging to the genus Tribolodon (Pisces, Cyprinidae) and closely related taxa. Russ. J. Genet. 38, 1518-1531.
28. Kim, I. S. (1997) Illustrated encyclopedia of fauna and flora of Korea, vol 37. Freshwater fishes (in Korean). Ministry of Education, Seoul.
29. Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
30. Kurawaka, K. (1977) Cephalic lateral-line systems and geographical distribution in the genus Tribolodon (Cyprinidae). Jpn. J. Ichthyol. 24, 167-175.
31. Lowe-McConnell, R. H. (1975) Fish communities. In: Tropical Freshwaters, pp. 337. Longman, London.
32. Mayer, F., and Kerth, G. (2005) Microsatellite evolution in the mitochondrial genome of Bechstein's bat (Myotis bechsteinii). J. Mol. Evol. 61, 408-416.
33. Miyadi, D., Kawanabe, H., and Mizuno, N. (1976) Coloured Illustrations of the Freshwater Fishes of Japan. Hoikusha. Osaka.
34. Nakabo, T. (2000) Fishes of Japan with pictorial keys to the species. 2nd. edit. Tokai University Press. Tokyo.
35. Nakamura, M. (1963) Keys to the Freshwater Fishes of Japan Fully Illustrated in Colors. 3rd ed. Hokuryukan. Tokyo.
36. Nakamura, M. (1969) Cyprinid Fishes of Japan. Studies on the Life History of Cyprinid Fishes of Japan. Special Publications, Res. Inst. Nat. Resources. Tokyo.
37. Nishimura, S. (1974) Origin of the Sea of Japan - approach from biogeography. Tsukiji Shokan, Tokyo.
38. Onodera, T., and Honma, Y. (1976) Racial differentiation of the Japanese dace (genus Leuciscus) in the north-eastern Japan. Proc. Jpn. Soc. Syst. Zool. 12, 65-77.
39. Posada, D., and Buckley, T. R. (2004) Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53, 793-808.
40. Rafinesque, C. S. (1820) Ichthyologia Ohiensis (Part. 5). Western Rev. Misc. Mag. 2, 235-242.
41. Reshetnikov, Y. S. (2003) Atlas of Russian Freshwater fishes. 2nd. edit. Nauka, Moscow.
42. Saitoh, K., Sado, T., Mayden, R. L., Hanzawa, N., Nakamura, K., Nishida, M., and Miya, M. (2006) Mitogenomic evolution and Interrelationships of the Cypriniformes (Actynopterygii: Ostariophysi): The first evidence towards resolution of higher-level relationships of the world's largest fresh-water fish clade based on 59 whole mitogenome sequences. J. Mol. Evol., 63, 826-841.
43. Saitou, N., and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
44. Sakai, H. (1995) Life-histories and genetic divergence in three species of Tribolodon (Cyprinidae). Memoirs of the Facult. Fish., Hokkaido Univ., 42, nos. 1-2.
45. Sakai, H., Goto, A., and Jeon, S. (2002) Speciation and dispersal of Tribolodon species (Pisces, Cyprinidae) around the Sea of Japan. Zool. Sci. 19, 1291-1303.
46. Sakai, H., Ito, Y., Shedko, S. V., Safronov, S. N., Frolov, S. V., Chereshnev, I. A., Jeon, S. R., and Goto, A. (2006) Phylogenetic and taxonomic relationships of Northern Far Eastern phoxinin minnows, Phoxinus and Rhynchocypris (Pisces, Cyprinidae), as inferred from allozyme and mitochondrial 16S rRNA sequence analyses. Zool. Sci. 23, 323-331.
47. Sasaki, T., Nikaido, M., Hamilton, H., Goto, M., Kato, H., Kanda, N., Pastene, L. A., Cao, Y., Fordyce, R. E., Hasegawa, M., and Okada, N. (2005) Mitochondrial phylogenetics and evolution of Mysticete whales. Syst. Biol. 54, 77-90.
48. Sasaki, T., Nikaido, M., Wada, S., Yamada, T. K., Cao, Y., Hasegawa, M., and Okada, N. (2006) Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage. Mol. Phylogenet. Evol. 41, 40-52.
49. Shedko, S. V. (2005) On the taxonomic status of Leuciscus sachalinensis Nikolsky, 1889 (Cypriniformes, Cyprinidae). J. Ichthyol. 45, 496-502.
50. Sterba, G. (1973) Freshwater Fishes of the World. T. F. H. Publications. London.
51. Swofford, D. L. (1998) PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4.0b. Sinauer Associates, Sunderland, Massachusetts.
52. Tomoda, Y. (1998) A travel to Ussury River and Lake Khanka in Russia. Aqua Life 6, 74-85.
53. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Research 25 (24), 4876-4882.
54. Uyeno, T. (1975) Paleontology III. ed. Shikama, T. Asakurashoten, Tokyo.
55. Uchida, K. (1939) The fishes of Tyosen (Korea). pt.1. Bull. Fish. Exp. St. Government-General of Tyosen.(6), Fusan.
56. Zardoya, R., and Meyer, A. (1996) Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol. Biol. Evol. 13, 933-942.
57. Zardoya, R., and Doadrio, I. (1999) Molecular evidence on the evolutionary and biogeographical patterns of European Cyprinids. J. Mol. Evol. 49, 227-237.
58. Zhu, K. (1993) The freshwater fishes of China in coloured illustrations. 3. Institute of Aquatic Organisms, Chinese Academy of Sciences, Shanghai Science and Technology Publishing Company, Shanghai.