메뉴 건너뛰기




Volumn 35, Issue 17, 2007, Pages 5874-5885

The U1 snRNP-associated factor Luc7p affects 5′ splice site selection in yeast and human

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROTEIN SUBUNIT; SMALL NUCLEAR RIBONUCLEOPROTEIN; SPLICED LEADER RNA; ZINC FINGER PROTEIN;

EID: 34848855566     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm505     Document Type: Article
Times cited : (39)

References (38)
  • 1
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • Maniatis,T. and Reed,R. (2002) An extensive network of coupling among gene expression machines. Nature, 416, 499-506.
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 2
    • 0034256020 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing: The logic of combinatorial control
    • Smith,C.W. and Valcarcel,J. (2000) Alternative pre-mRNA splicing: The logic of combinatorial control. Trends Biochem. Sci., 25, 381-388.
    • (2000) Trends Biochem. Sci , vol.25 , pp. 381-388
    • Smith, C.W.1    Valcarcel, J.2
  • 3
  • 5
    • 0033576625 scopus 로고    scopus 로고
    • Inhibition of ms1-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3′ splice site AG
    • Merendino,L., Guth,S., Bilbao,D., Martinez,C. and Valcarcel,J. (1999) Inhibition of ms1-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3′ splice site AG. Nature, 402, 838-841.
    • (1999) Nature , vol.402 , pp. 838-841
    • Merendino, L.1    Guth, S.2    Bilbao, D.3    Martinez, C.4    Valcarcel, J.5
  • 6
    • 0025876808 scopus 로고
    • Who's on first? The U1 snRNP-5′ splice site interaction and splicing
    • Rosbash,M. and Seraphin,B. (1991) Who's on first? The U1 snRNP-5′ splice site interaction and splicing. Trends Biochem. Sci., 16 187-190.
    • (1991) Trends Biochem. Sci , vol.16 , pp. 187-190
    • Rosbash, M.1    Seraphin, B.2
  • 7
    • 0024325159 scopus 로고
    • Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing
    • Seraphin,B. and Rosbash,M. (1989) Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing. Cell, 59, 349-358.
    • (1989) Cell , vol.59 , pp. 349-358
    • Seraphin, B.1    Rosbash, M.2
  • 8
    • 0026263756 scopus 로고
    • An ATP-independent complex commits pre-mRNA to the mammalian spliceosome assembly pathway
    • Michaud,S. and Reed,R. (1991) An ATP-independent complex commits pre-mRNA to the mammalian spliceosome assembly pathway. Genes Dev. 5, 2534-2546.
    • (1991) Genes Dev , vol.5 , pp. 2534-2546
    • Michaud, S.1    Reed, R.2
  • 9
    • 0024062611 scopus 로고
    • A U1 snRNA:pRe-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5′ cleavage site
    • Seraphin,B., Kretzner,L. and Rosbash,M. (1988) A U1 snRNA:pRe-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5′ cleavage site. EMBO J., 7, 2533-2538.
    • (1988) EMBO J , vol.7 , pp. 2533-2538
    • Seraphin, B.1    Kretzner, L.2    Rosbash, M.3
  • 10
    • 0027231486 scopus 로고
    • 3′ splice site recognition in S. cerevisiae does not require base pairing with U1 snRNA
    • Seraphin,B. and Kandels-Lewis,S. (1993) 3′ splice site recognition in S. cerevisiae does not require base pairing with U1 snRNA. Cell, 73, 803-812.
    • (1993) Cell , vol.73 , pp. 803-812
    • Seraphin, B.1    Kandels-Lewis, S.2
  • 11
    • 0024100924 scopus 로고
    • 5′ splice site selection in yeast: Genetic alterations in base-pairing with U1 reveal additional requirements
    • Siliciano,P.G. and Guthrie,C. (1988) 5′ splice site selection in yeast: Genetic alterations in base-pairing with U1 reveal additional requirements. Genes Dev., 2, 1258-1267.
    • (1988) Genes Dev , vol.2 , pp. 1258-1267
    • Siliciano, P.G.1    Guthrie, C.2
  • 13
    • 0033105003 scopus 로고    scopus 로고
    • Interaction of the U1 snRNP with nonconserved intronic sequences affects 5′ splice site selection
    • Puig,O., Gottschalk,A., Fabrizio,P. and Seraphin,B. (1999) Interaction of the U1 snRNP with nonconserved intronic sequences affects 5′ splice site selection. Genes Dev., 13, 569-580.
    • (1999) Genes Dev , vol.13 , pp. 569-580
    • Puig, O.1    Gottschalk, A.2    Fabrizio, P.3    Seraphin, B.4
  • 14
    • 0033106323 scopus 로고    scopus 로고
    • Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex
    • Zhang,D. and Rosbash,M. (1999) Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex. Genes Dev. 13, 581-592.
    • (1999) Genes Dev , vol.13 , pp. 581-592
    • Zhang, D.1    Rosbash, M.2
  • 16
    • 0031029388 scopus 로고    scopus 로고
    • Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry
    • Neubauer,G., Gottschalk,A., Fabrizio,P., Seraphin,B., Luhrmann,R. and Mann,M. (1997) Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry. Proc. Natl Acad. Sci. USA, 94, 385-390.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 385-390
    • Neubauer, G.1    Gottschalk, A.2    Fabrizio, P.3    Seraphin, B.4    Luhrmann, R.5    Mann, M.6
  • 18
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • Rigaut,G., Shevchenko,A., Rutz,B., Wilm,M., Mann,M. and Seraphin,B. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol., 17 1030-1032.
    • (1999) Nat. Biotechnol , vol.17 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 19
    • 0037121924 scopus 로고    scopus 로고
    • The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites
    • Forch,P., Puig,O., Martinez,C., Seraphin,B. and Valcarcel,J. (2002) The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites. EMBO J.; 21, 6882-6892.
    • (2002) EMBO J , vol.21 , pp. 6882-6892
    • Forch, P.1    Puig, O.2    Martinez, C.3    Seraphin, B.4    Valcarcel, J.5
  • 21
    • 0034841844 scopus 로고    scopus 로고
    • Puig,O., Caspary,F., Rigaut.G., Rutz,B., Bouveret,E., Bragado-Nilsson,E., Wilm,M. and Seraphin,B. (2001) The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods, 24, 218-229.
    • Puig,O., Caspary,F., Rigaut.G., Rutz,B., Bouveret,E., Bragado-Nilsson,E., Wilm,M. and Seraphin,B. (2001) The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods, 24, 218-229.
  • 22
    • 0025733098 scopus 로고
    • The yeast branchpoint sequence is not required for the formation of a stable U1 snRNA-pre-mRNA complex and is recognized in the absence of U2 snRNA
    • Seraphin,B. and Rosbash,M. (1991) The yeast branchpoint sequence is not required for the formation of a stable U1 snRNA-pre-mRNA complex and is recognized in the absence of U2 snRNA. EMBO J., 10, 1209-1216.
    • (1991) EMBO J , vol.10 , pp. 1209-1216
    • Seraphin, B.1    Rosbash, M.2
  • 23
    • 0344172814 scopus 로고    scopus 로고
    • A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor
    • Luukkonen,B.G. and Seraphin,B. (1999) A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor. Nucleic Acids Res. 27, 3455-3465.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3455-3465
    • Luukkonen, B.G.1    Seraphin, B.2
  • 24
    • 0025951303 scopus 로고
    • U1 snRNP can influence 3′ -splice site selection as well as 5′-splice site selection
    • Goguel,V., Liao,X.L., Rymond,B.C. and Rosbash,M. (1991) U1 snRNP can influence 3′ -splice site selection as well as 5′-splice site selection. Genes Dev., 5, 1430-1438.
    • (1991) Genes Dev , vol.5 , pp. 1430-1438
    • Goguel, V.1    Liao, X.L.2    Rymond, B.C.3    Rosbash, M.4
  • 25
    • 0028077730 scopus 로고
    • Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors
    • Caceres,J.F., Stamm,S., Helfman,D.M. and Krainer,A.R. (1994) Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors. Science, 265, 1706-1709.
    • (1994) Science , vol.265 , pp. 1706-1709
    • Caceres, J.F.1    Stamm, S.2    Helfman, D.M.3    Krainer, A.R.4
  • 26
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam,J.D., Lebovitz,R.M. and Roeder,R.G. (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res., 11, 1475-1489.
    • (1983) Nucleic Acids Res , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 28
    • 0023784024 scopus 로고
    • DNA binding by proteins
    • Schleif,R. (1988) DNA binding by proteins. Science, 241, 1182-1187.
    • (1988) Science , vol.241 , pp. 1182-1187
    • Schleif, R.1
  • 29
    • 0030693779 scopus 로고    scopus 로고
    • TnTIN and TnTAP: Mini-transposons for site-specific proteolysis in vivo
    • Ehrmann,M., Bolek,P., Mondigler,M., Boyd,D. and Lange,R. (1997) TnTIN and TnTAP: Mini-transposons for site-specific proteolysis in vivo. Proc. Natl Acad. Sci. USA, 94, 13111-13115.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 13111-13115
    • Ehrmann, M.1    Bolek, P.2    Mondigler, M.3    Boyd, D.4    Lange, R.5
  • 30
    • 0033981517 scopus 로고    scopus 로고
    • CROP/Luc7A, a novel serine/arginine-rich nuclear protein, isolated from cisplatin-resistant cell line
    • Nishii,Y., Morishima,M., Kakehi,Y., Umehara,K., Kioka,N., Terano,Y., Amachi,T. and Ueda,K. (2000) CROP/Luc7A, a novel serine/arginine-rich nuclear protein, isolated from cisplatin-resistant cell line. FEBS Lett., 465, 153-156.
    • (2000) FEBS Lett , vol.465 , pp. 153-156
    • Nishii, Y.1    Morishima, M.2    Kakehi, Y.3    Umehara, K.4    Kioka, N.5    Terano, Y.6    Amachi, T.7    Ueda, K.8
  • 31
    • 0035251691 scopus 로고    scopus 로고
    • Characterization of a widely expressed gene (LUC7-LIKE; LUC7L) defining the centromeric boundary of the human alpha-globin domain
    • Tufarelli,C., Frischauf,A.M., Hardison,R., Flint,J. and Higgs,D.R. (2001) Characterization of a widely expressed gene (LUC7-LIKE; LUC7L) defining the centromeric boundary of the human alpha-globin domain. Genomics, 71, 307-314.
    • (2001) Genomics , vol.71 , pp. 307-314
    • Tufarelli, C.1    Frischauf, A.M.2    Hardison, R.3    Flint, J.4    Higgs, D.R.5
  • 32
    • 0030218143 scopus 로고    scopus 로고
    • The SR protein family: Pleiotropic functions in pre-mRNA splicing
    • Valcarcel,J. and Green,M.R. (1996) The SR protein family: Pleiotropic functions in pre-mRNA splicing. Trends Biochem. Sci., 21, 296-301.
    • (1996) Trends Biochem. Sci , vol.21 , pp. 296-301
    • Valcarcel, J.1    Green, M.R.2
  • 33
    • 0033926038 scopus 로고    scopus 로고
    • Compartmentalization of RNA processing factors within nuclear speckles
    • Mintz,P.J. and Spector,D.L. (2000) Compartmentalization of RNA processing factors within nuclear speckles. J. Struct. Biol., 129, 241-251.
    • (2000) J. Struct. Biol , vol.129 , pp. 241-251
    • Mintz, P.J.1    Spector, D.L.2
  • 34
    • 0025173604 scopus 로고
    • Structure of spliceosomal snRNPs and their role in pre-mRNA splicing
    • Luhrmann,R., Kastner,B. and Bach,M. (1990) Structure of spliceosomal snRNPs and their role in pre-mRNA splicing. Biochim. Biophys. Acta 1087, 265-292.
    • (1990) Biochim. Biophys. Acta , vol.1087 , pp. 265-292
    • Luhrmann, R.1    Kastner, B.2    Bach, M.3
  • 35
    • 0022516779 scopus 로고
    • A role for exon sequences and splice-site proximity in splice-site selection
    • Reed,R. and Maniatis,T. (1986) A role for exon sequences and splice-site proximity in splice-site selection. Cell, 46, 681-690.
    • (1986) Cell , vol.46 , pp. 681-690
    • Reed, R.1    Maniatis, T.2
  • 36
    • 16244399185 scopus 로고    scopus 로고
    • A novel SR-related protein is required for the second step of Pre-mRNA splicing
    • Cazalla,D., Newton,K. and Caceres,J.F. (2005) A novel SR-related protein is required for the second step of Pre-mRNA splicing. Mol. Cell Biol. 25, 2969-2980.
    • (2005) Mol. Cell Biol , vol.25 , pp. 2969-2980
    • Cazalla, D.1    Newton, K.2    Caceres, J.F.3
  • 37
    • 34547647038 scopus 로고    scopus 로고
    • Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors
    • in press
    • Chen,Y.I., Moore R.E., Ge,H.Y., Young,M.K., Lee,T.D. and Stevens,S.W. (2007) Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Nucleic Acids Res in press.
    • (2007) Nucleic Acids Res
    • Chen, Y.I.1    Moore, R.E.2    Ge, H.Y.3    Young, M.K.4    Lee, T.D.5    Stevens, S.W.6
  • 38
    • 0028244868 scopus 로고
    • Isolation of S. cerevisiae snRNPs: Comparison of U1 and U4/U6.U5 to their human counterparts
    • Fabrizio,P., Esser,S., Kastner,B. and Luhrmann,R. (1994) Isolation of S. cerevisiae snRNPs: Comparison of U1 and U4/U6.U5 to their human counterparts. Science, 264, 261-265.
    • (1994) Science , vol.264 , pp. 261-265
    • Fabrizio, P.1    Esser, S.2    Kastner, B.3    Luhrmann, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.