Influence of red mud, zeolite and lime on heavy metal immobilization, culturable heterotrophic microbial populations and enzyme activities in a contaminated soil

Geoderma

Volumn 142, Issue 1-2, 2007, Pages 47-57

  Garau, Giovanni ^a   Castaldi, Paola ^a   Santona, Laura ^a   Deiana, Pietrino ^a   Melis, Pietro ^a  

^a UNIVERSITY OF SASSARI   (Italy)

Author keywords

16S rDNA sequencing; Community level physiological profile; Enzymatic activities; Heavy metals; Heterotrophic bacteria; Soil amendments

Indexed keywords

ENZYME ACTIVITY; HEAVY METALS; MICROORGANISMS; PH EFFECTS; SOILS;

COMMUNITY LEVEL PHYSIOLOGICAL PROFILE; CULTURABLE HETEROTROPHIC MICROBIAL POPULATIONS; HETEROTROPHIC BACTERIA; SOIL AMENDMENTS;

BIOGEOCHEMISTRY;

ACID SOIL; BIOASSAY; ENZYME ACTIVITY; HEAVY METAL; HETEROTROPHY; IMMOBILIZATION; LIME; MICROBIAL COMMUNITY; MUD; SOIL AMENDMENT; SOIL POLLUTION; ZEOLITE;

ACTINOBACTERIA; ARTHROBACTER; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); BACTEROIDETES/CHLOROBI GROUP; BETAPROTEOBACTERIA; FIRMICUTES; FUNGI; NEGIBACTERIA; PEDOBACTER; POSIBACTERIA; RALSTONIA;

EID: 34748884913     PISSN: 00167061     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.geoderma.2007.07.011     Document Type: Article

References (57)

1. Adriano D.C., Wenzel W.W., Vangronsveld J., and Bolan N.S. Role of assisted natural remediation in environmental cleanup. Geoderma 122 (2004) 121-142
2. Akmal M., Janming X., Zhaojun L., Haizhen W., and Huaiying Y. Effects of lead and cadmium nitrate on biomass and substrate utilization pattern of soil microbial communities. Chemosphere 60 (2005) 508-514
3. Alef K., and Nannipieri P. Methods in Applied Soil Microbiology and Biochemistry (1995), Academic Press, London
4. Allievi L. Microrganismi del ciclo dell'azoto. Batteri azotofissatori liberi, aerobi ed anaerobi. In: Picci G., and Nannipieri P. (Eds). Metodi di Analisi Microbiologica del Suolo (2003), Franco Angeli, Milan 5-10
5. Alloway B.J. Soil processes and the behavior of metals. In: Alloway B.J. (Ed). Heavy Metals in Soils (1990), John Wiley and Son Inc., New York 7-28
6. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zheng Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
7. Aquilanti L., Favilli F., and Clementi F. Comparison of different strategies for isolation and preliminary identification of Azotobacter from soil samples. Soil Biol. Biochem. 36 (2004) 1475-1483
8. Bååt E., Frostegård Å., Pennanen T., and Fritze H. Microbial community structure and pH response in relation to soil organic matter quality in wood-ash fertilized, clear-cut or burned coniferous soil. Soil Biol. Biochem. 27 (1995) 229-240
9. Basta N.T., and Gradwohl R. Estimation of Cd, Pb, and Zn bioavailability in smelter-contaminated soils by a sequential extraction procedure. J. Soil Contam. 9 (2000) 149-164
10. Bertocchi A.F., Ghiani M., Peretti R., and Zucca A. Red mud and fly ash for remediation of mine sites contaminated with As, Cd, Cu, Pb and Zn. J. Hazard. Mater. 134 (2006) 112-119
11. Broos K., Uyttebroek M., Mertens J., and Smolders E. A survey of nitrogen fixation by white clover grown on metal contaminated soils. Soil Biol. Biochem. 36 (2004) 633-640
12. Bruemmer G.W., Gerth J., and Tiller K.G. Reaction kinetics of the adsorption and desorption of nickel, zinc and cadmium by goethite. I. Adsorption and diffusion of metals. J. Soil Sci. 39 (1988) 37-52
13. Castaldi P., Santona L., Cozza C., Giuliano V., Abbruzzese C., and Melis P. Recovery of soils contaminated with heavy metals: preliminary results. Fresenius Environ. Bull. 13 (2004) 1232-1236
14. Castaldi P., Santona L., Cozza C., Giuliano V., Abbruzzese C., Nastro V., and Melis P. Thermal and spectroscopic studies of zeolites exchanged with metal cations. J. Mol. Struct. 734 (2005) 99-105
15. Castaldi P., Santona L., and Melis P. Heavy metals immobilization by chemical amendments in a polluted soil and influence on white lupin growth. Chemosphere 60 (2005) 365-371
16. Chlopecka A., and Adriano D.C. Mimicked in-situ stabilization of metals in a cropped soil: bioavailability and chemical form of zinc. Environ. Sci. Technol. 30 (1996) 3294-3303
17. Dobler R., Saner M., and Bachofen R. Population changes of soil microbial communities induced by hydrocarbon and heavy metal contamination. Bioremediat. J. 4 (2000) 41-56
18. Ellis R.J., Neish B., Trett M.W., Best J.G., Weightman A.J., Morgan P., and Fry J.C. Comparison of microbial and meiofaunal community analyses for determining impact of heavy metals contamination. J. Microbiol. Methods 45 (2001) 171-185
19. Friesl W., Lombi E., Horak O., and Wenzel W.W. Immobilization of heavy metals in soils using inorganic amendments in a greenhouse study. J. Plant Nutr. Soil Sci. 166 (2003) 191-196
20. Frostegård Å., Bååth E., and Tunlid A. Shift in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis. Soil Biol. Biochem. 25 (1993) 723-730
21. Garau G., Reeve W.G., Bräu L., Deiana P., Yates R.J., James D., Tiwari R., O'Hara G.W., and Howieson J.G. The symbiotic requirements of different Medicago spp. suggest the evolution of Sinorhizobium meliloti and S. medicae with hosts differentially adapted to soil pH. Plant Soil 176 (2005) 263-277
22. Garland J.L. Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbiol. Ecol. 24 (1997) 289-300
23. Gee G.W., and Bauder J.W. Particle size analysis. In: Klute A. (Ed). Methods of Soil Analysis. Part 1. Physical and Mineralogical Methods. Second Edition (1986), Soil Science Society of America, Madison WI, USA 383-411
24. Gray C.W., Dunham S.J., Dennis P.G., Zhao F.J., and McGrath S.P. Fields evaluation of in situ remediation of a heavy metal contaminated soil using lime and red-mud. Environ. Pollut. 142 (2006) 530-539
25. Gremion F., Chatzinotas A., and Harms H. Comparative 16S rDNA and 16S rRNA sequence analysis indicates that Actinobacteria might be a dominant part of the metabolically active bacteria in heavy metal-contaminated bulk and rhizosphere soil. Environ. Microbiol. 5 (2003) 896-907
26. Gremion F., Chatzinotas A., Kaufmann K., Von Sigler W., and Harms H. Impacts of heavy metal contamination and phytoremediation on a microbial community during a twelve-month microcosm experiment. FEMS Microbiol. Ecol. 48 (2004) 273-283
27. Gupta V.K., and Sharma S. Removal of cadmium and zinc from aqueous solutions using red mud. Environ. Sci. Technol. 36 (2002) 3612-3617
28. Haack S.K., Garchow H., Klug M.J., and Forney L.J. Analysis of factor affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns. Appl. Environ. Microbiol. 61 (1995) 1458-1468
29. Héry M., Nazaret S., Jaffré T., Normand P., and Navarro E. Adaptation to nickel spiking of bacterial communities in neocaledonian soils. Environ. Microbiol. 5 (2003) 3-12
30. Heuer H., and Smalla K. Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllosphere. J. Microbiol. Methods 30 (1997) 49-61
31. Kelly J.J., Häggblom M., and Tate R.L. Changes in soil microbial communities over time resulting from one time application of zinc: a laboratory microcosm study. Soil Biol. Biochem. 31 (1999) 1455-1465
32. Kelly J.J., Häggblom M., and Tate R.L. Effects of heavy metal contamination and remediation on soil microbial communities in the vicinity of a zinc smelter as indicated by analysis of microbial community phospholipid fatty acid profiles. Biol. Fertil. Soils 38 (2003) 65-71
33. Knight B.P., McGrath S.P., and Chaudri A.M. Biomass and substrate utilization patterns of microbial populations from soils amended with cadmium, copper, or zinc. Appl. Environ. Microbiol. 63 (1997) 39-43
34. Larkin R.P. Characterization of soil microbial communities under different potato cropping systems by microbial population dynamics, substrate utilization, and fatty acid profiles. Soil Biol. Biochem. 35 (2003) 1451-1466
35. Lee I.S., Kim O.K., Chang Y.Y., Bae B., Kim Y.H., and Baek K.H. Heavy metal concentrations and enzyme activities in soil from contaminated Korean shooting range. J. Biol. Sci. Bioeng. 94 (2002) 406-411
36. Lombi E., Zhao F.J., Wieshammer G., Zhang G., and McGrath S.P. In situ fixation of metals in soils using bauxite residue: biological effects. Environ. Pollut. 118 (2002) 445-452
37. Lombi E., Hamon R.E., Wieshammer G., McLaughlin M.J., and McGrath S.P. Assessment of the use of industrial by-products to remediate a copper- and arsenic-contaminated soil. J. Environ. Qual. 33 (2004) 902-910
38. Mench M., Renella G., Gelsomino A., Landi L., and Nannipieri P. Biochemical parameters and bacterial species richness in soils contaminated by sludge-borne metals and remediated with inorganic soil amendments. Environ. Pollut. 144 (2006) 24-31
39. Moffet B.F., Nicholson F.A., Uwakwe N.C., Chambers B.J., Harris J.A., and Hill T.J.C. Zinc contamination decreases the bacterial diversity of agricultural soil. FEMS Microbiol. Ecol. 43 (2003) 13-19
40. Niklińska M., Chodak M., and Laskowsky R. Characterization of the forest humus microbial community in a heavy metal polluted area. Soil Biol. Biochem. 37 (2005) 2185-2194
41. Niklińska M., Chodak M., and Laskowsky R. Pollution-induced community tolerance of microorganisms from forest soil organic layers polluted with Zn or Cu. Appl. Soil Ecol. 32 (2006) 265-272
42. Nirel P.M.V., and Morel F.M.M. Pitfalls of sequential extractions. Water Res. 24 (1990) 1055-1056
43. Obbard J.P., and Jones K.C. Measurement of symbiotic nitrogen-fixation in leguminous host-plant grown in heavy metal-contaminated soils amended with sewage sludge. Environ. Poll. 111 (2001) 311-320
44. Oliveira A., and Pampulha M.E. Effects of long-term heavy metal contamination on soil microbial characteristics. J. Bio. Sci. Bioeng. 102 (2006) 157-161
45. 3H-thymidine incorporation methods in field studies. Geoderma 100 (2001) 91-126
46. Pennanen T., Fostegård Å., Fritze H., and Bååt E. Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal-polluted gradients in coniferous forests. Appl. Environ. Microbiol. 62 (1996) 420-428
47. Piotrowska-Seget Z., Cycoń M., and Kozdrój J. Metal-tolerant bacteria occurring in heavily polluted soil and mine spoil. Appl. Soil Ecol. 28 (2005) 237-246
48. Preston-Mafham J., Boddy L., and Randerson P.F. Analysis of microbial community functional diversity using sole-carbon utilisation profiles-a critique. FEMS Microbiol. Ecol. 42 (2002) 1-14
49. Renella G., Mench M., Gelsomino A., Landi L., and Nannipieri P. Functional activity and microbial community structure in soils amended with bimetallic sludges. Soil Biol. Biochem. 37 (2005) 1498-1506
50. Santona L., Castaldi P., and Melis P. Evaluation of the interaction mechanisms between red muds and heavy metals. J. Hazard. Mater. 136 (2006) 324-329
51. Smalla K., Wachtendorf U., Heuer H., Liu W., and Forney L. Analysis of BIOLOG GN substrates utilization patterns by microbial communities. Appl. Environ. Microbiol. 64 (1998) 1220-1225
52. Stuczynski T.I., McCarty G.W., and Siebielec G. Response of soil microbial activities to cadmium, lead, and zinc salt amendments. J. Environ. Qual. 32 (2003) 1346-1355
53. Thompson J.P. Counting viable Azotobacter chroococcum in vertisols. II Comparison of media. Plant Soil 117 (1989) 17-29
54. Viti C., and Giovannetti L. Characterization of cultivable heterotrophic bacterial communities in Cr-polluted and unpolluted soils using Biolog and ARDRA approaches. Appl. Soil Ecol. 28 (2005) 101-112
55. Viti C., Mini A., Ranalli G., Lustrato G., and Giovannetti L. Response of microbial communities to different doses of chromate in soil microcosms. Appl. Soil Ecol. 34 (2006) 125-139
56. Weisburg W.G., Burns S.M., Pelletier D.A., and Lane D.J. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173 (1991) 697-703
57. White C., Tardif J.C., Adkins A., and Staniforth R. Functional diversity of microbial communities in the mixed boreal plain forest of central Canada. Soil Biol. Biochem. 37 (2005) 1359-1372