Dissimilatory iodate reduction by marine Pseudomonas sp. strain SCT

Applied and Environmental Microbiology

Volumn 73, Issue 18, 2007, Pages 5725-5730

  Amachi, Seigo ^a   Kawaguchi, Nahito ^a   Muramatsu, Yasuyuki ^b   Tsuchiya, Satoshi ^a   Watanabe, Yuko ^a   Shinoyama, Hirofumi ^a   Fujii, Takaaki ^a  

^a CHIBA UNIVERSITY   (Japan)

^b GAKUSHUIN UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; ENZYME ACTIVITY; IODINE COMPOUNDS; MARINE BIOLOGY; NEGATIVE IONS; REDUCTION; SEDIMENTS;

ANAEROBIC CULTURE; ANAEROBIC GROWTH; IODATE REDUCTION;

BACTERIA;

IODATE; IODIDE; NITRATE; OXIDOREDUCTASE; PARAQUAT;

ANOXIC CONDITIONS; BACTERIUM; CHEMICAL COMPOUND; ENZYME ACTIVITY; GROWTH RESPONSE; MARINE SEDIMENT; MICROBIAL ACTIVITY; REDUCTION; SLURRY;

AEROBIC METABOLISM; ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; CELL GROWTH; CELL SUSPENSION; CHEMICAL REACTION; CYTOPLASM; DENITRIFYING BACTERIUM; ELECTRON TRANSPORT; ENZYME ACTIVITY; MARINE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PSEUDOMONAS; PSEUDOMONAS STUTZERI; REDUCTION; SEDIMENT;

DNA, BACTERIAL; IODATES; MOLECULAR SEQUENCE DATA; NITRATES; OXIDATION-REDUCTION; PSEUDOMONAS; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); PSEUDOMONAS SP.; PSEUDOMONAS STUTZERI;

EID: 34648836784     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00241-07     Document Type: Article

References (50)

1. Berks, B. C., D. J. Richardson, C. Robinson, A. Reilly, R. T. Aplin, and S. J. Ferguson. 1994. Purification and characterization of the periplasmic nitrate reductase from Thiosphaera pantotropha. Eur. J. Biochem. 220:117-124.
2. Bradford, M. M. 1976. A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Chem. 72:248-254.
3. 129I from the nuclear reprocessing facilities traced in precipitation and runoff in northern Europe. Environ. Sci. Technol. 35:1579-1586.
4. Campos, M. L. A. M., A. M. Farrenkopf, T. D. Jickells, and G. W. Luther III. 1996. A comparison of dissolved iodine cycling at the Bermuda Atlantic Time-series Station and Hawaii Ocean Time-series Station. Deep-Sea Res. Part II Top. Stud. Oceanogr. 43:455-466.
5. Chance, R., G. Malin, T. Jickells, and A. R. Baker. 2007. Reduction of iodate to iodide by cold water diatom cultures. Mar. Chem. 105:169-180.
6. Chapman, P. 1983. Changes in iodine speciation in the Benguela Current upwelling system. Deep-Sea Res. 30:1247-1259.
7. Councell, T. B., E. R. Landa, and D. R. Lovley. 1997. Microbial reduction of iodate. Water Air Soil Pollut. 100:99-106.
8. Farrenkopf, A. M., M. E. Dollhopf, S. N. Chadhain, G. W. Luther III, and K. H. Nealson. 1997. Reduction of iodate in seawater during Arabian Sea shipboard incubations and in laboratory cultures of the marine bacterium Shewanella putrefaciens strain MR-4. Mar. Chem. 57:347-354.
9. Farrenkopf, A. M., and G. W. Luther III. 2002. Iodine chemistry reflects productivity and denitrification in the Arabian Sea: evidence for flux of dissolved species from sediments of western India into the OMZ. Deep-Sea Res. Part II Top. Stud. Oceanogr. 49:2303-2318.
10. Farrenkopf, A. M., G. W. Luther III, V. W. Truesdale, and C. H. van der Weijden. 1997. Sub-surface iodide maxima: evidence for biologically catalyzed redox cycling in Arabian Sea OMZ during the SW intermonsoon. Deep-Sea Res. Part II Top. Stud. Oceanogr. 44:1391-1409.
11. 129I: relevance for the origin of marine gas hydrates. Science 289:2332-2335.
12. Fuge, R., and C. C. Johnson. 1986. The geochemistry of iodine. Environ. Geochem. Health 8:31-54.
13. Hayashi, A., K. Sakamoto, and T. Yoshida. 1997. A rapid method for determination of nitrate in soil by hydrazine reduction procedure. Jpn. J. Soil Sci. Plant Nutr. 68:322-326. (In Japanese).
14. Hetzel, B. S. 1983. Iodine deficiency disorders (IDD) and their eradication. Lancet ii:1126-1129.
15. Hetzel, B. S., and M. T. Mano. 1989. A review of experimental studies of iodine deficiency during fetal development. J. Nutr. 119:145-151.
16. Hiraishi, A. 1992. Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett. Appl. Microbiol. 15:210-213.
17. Hou, X. L., H. Dahlgaard, and S. P. Nielsen. 2000. Iodine-129 time series in Danish, Norwegian and northwest Greenland coast and the Baltic Sea by seaweed. Estuar. Coast. Shelf Sci. 51:571-584.
18. Johannesson, J. K. 1957. Nature of the bactericidal agent in sea water. Nature 180:285-286.
19. Kanagawa, T., Y. Kamagata, S. Aruga, T. Kohno, M. Horn, and M. Wagner. 2000. Phylogenetic analysis of and oligonucleotide probe development for Eikelboom type 021N filamentous bacteria isolated from bulking activated sludge. Appl. Environ. Microbiol. 66:5043-5052.
20. Kennedy, H. A., and H. Elderfield. 1987. Iodine diagenesis in pelagic deep-sea sediments. Geochim. Cosmochim. Acta 51:2489-2504.
21. Lalucat, J., A. Bennasar, R. Bosch, E. García-Valdés, and N. J. Palleroni. 2006. Biology of Pseudomonas stutzeri. Microbiol. Mol. Biol. Rev. 70:510-547.
22. Luther, G. W., III, and T. Campbell. 1991. Iodine speciation in the water column of the Black Sea. Deep-Sea Res. 38:S875-S882.
23. 129iodine from nuclear fuel reprocessing facilities. Environ. Sci. Technol. 33:2536-2542.
24. Moreno-Vivián, C., P. Cabello, M. Martínez-Luque, R. Blasco, and F. Castillo. 1999. Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J. Bacteriol. 181:6573-6584.
25. Mullin, J. B., and J. P. Riley. 1955. The spectrophotometric determination of nitrate in natural waters with particular reference to sea-water. Anal. Chim. Acta 12:464-480.
26. Muramatsu, Y., T. Doi, H. Tomaru, U. Fehn, R. Takeuchi, and R. Matsumoto. 2007. Halogen concentrations in pore waters and sediments of the Nankai Trough, Japan: implications for the origin of gas hydrates. Appl. Geochem. 22:534-556.
27. Muramatsu, Y., and Y. Ohmomo. 1986. Iodine-129 and iodine-127 in environmental samples collected from Tokaimura/Ibaraki, Japan. Sci. Total Environ. 48:33-43.
28. Nakayama, E., T. Kimoto, K. Isshiki, Y. Sohrin, and S. Okazaki. 1989. Determination and distribution of iodide- and total-iodine in the North Pacific Ocean - by using a new automated electrochemical method. Mar. Chem. 27:105-116.
29. Pedersen, T. F., and N. B. Price. 1980. The geochemistry of iodine and bromine in sediments of the Panama Basin. J. Mar. Res. 38:397-411.
30. 129I in the oceans: origin and applications. Sci. Total Environ. 238:31-41.
31. Sillen, L. G. 1961. The physical chemistry of seawater, p. 549-581. In M. Sears (ed.), Oceanography. American Association for the Advancement of Science, Washington, DC.
32. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
33. Tian, R. C., J. C. Marty, E. Nicolas, J. Chiavérini, D. Ruiz-Pino, and M. D. Pizay. 1996. Iodine speciation: a potential indicator to evaluate new production versus regenerated production. Deep-Sea Res. Part I Oceanogr. Res. Pap. 43:723-738.
34. Tian, R. C., and E. Nicolas. 1995. Iodine speciation in the northwest Mediterranean Sea: method and vertical profile. Mar. Chem. 48:151-156.
35. Truesdale, V. W., and R. M. Moore. 1992. Further studies on the chemical reduction of molecular iodine added to seawater. Mar. Chem. 40:199-213.
36. Tsunogai, S., and T. Sase. 1969. Formation of iodide-iodine in the ocean. Deep-Sea Res. 16:489-496.
37. Ullman, W. J., G. W. Luther III, G. J. De Lange, and J. R. W. Woittiez. 1990. Iodine chemistry in deep anoxic basins and overlying waters of the Mediterranean Sea. Mar. Chem. 31:153-170.
38. 131I, and its transfer to milk in cows given different stable iodine diets. J. Environ. Radioact. 47:301-317.
39. Waite, T. J., and V. W. Truesdale. 2003. Iodate reduction by Isochrysis galbana is relatively insensitive to de-activation of nitrate reductase activity - are phytoplankton really responsible for iodate reduction in seawater? Mar. Chem. 81:137-148.
40. Wang, H., Y. Tokushige, H. Shinoyama, T. Fujii, and T. Urakami. 1998. Purification and characterization of a thermostable catalase from culture broth of Thermoascus aurantiacus. J. Ferment. Bioeng. 85:169-173.
41. Whitehead, D. C. 1984. The distribution and transformations of iodine in the environment. Environ. Int. 10:321-339.
42. Wolterink, A. F. W. M., A. B. Jonker, S. W. M. Kengen, and A. J. M. Stams. 2002. Pseudomonas chloritidismutans sp. nov., a non-denitrifying, chlorate-reducing bacterium. Int. J. Syst. Evol. Microbiol. 52:2183-2190.
43. Wolterink, A. F. W. M., E. Schiltz, P.-L. Hagedoorn, W. R. Hagen, S. W. M. Kengen, and A. J. M. Stams. 2003. Characterization of the chlorate reductase from Pseudomonas chloritidismutans. J. Bacteriol. 185:3210-3213.
44. Wong, G. T. F. 1991. The marine geochemistry of iodine. Rev. Aquat. Sci. 4:45-73.
45. Wong, G. T. F. 1980. The stability of dissolved inorganic species of iodine in seawater. Mar. Chem. 9:13-24.
46. Wong, G. T. F., and P. G. Brewer. 1977. The marine chemistry of iodine in anoxic basins. Geochim. Cosmochim. Acta 41:151-159.
47. Wong, G. T. F., A. U. Piumsomboon, and W. M. Dunstan. 2002. The transformation of iodate to iodide in marine phytoplankton cultures. Mar. Ecol. Prog. Ser. 237:27-39.
48. Wong, G. T. F., K. Takayanagi, and J. F. Todd. 1985. Dissolved iodine in waters overlying and in the Orca Basin, Gulf of Mexico. Mar. Chem. 17: 177-183.
49. Yamaguchi, N., M. Nakano, H. Taniba, H. Fujikawa, and N. Kihou. 2006. Redox reaction of iodine in paddy soil investigated by field observation and the I K-Edge XANES fingerprinting method. J. Environ. Radioact. 86:212-226.
50. Zumft, W. G. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61:533-616.