Characterization of the unique organization and co-regulation of a gene cluster required for phenol and benzene catabolism in Pseudomonas sp. M1

Journal of Biotechnology

Volumn 131, Issue 4, 2007, Pages 371-378

  Santos, Pedro M ^a   Sá Correia, Isabel ^a  

^a INSTITUTO SUPERIOR TÉCNICO   (Portugal)

Author keywords

Catechol 1,2 dioxygenase; Multicomponent hydroxylase; Pseudomonas; Regulation of phenol catabolism; Sigma 54

Indexed keywords

CATECHOL 1,2-DIOXYGENASE; MULTICOMPONENT HYDROXYLASE; PHENOL CATABOLISM; PSEUDOMONAS;

BENZENE; PHENOLS; RIVERS; SEDIMENTS; TOXIC MATERIALS;

GENES;

BENZENE; CATECHOL 1,2 DIOXYGENASE; PHENOL; PHENOL HYDROXYLASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR PHCR; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENETICS; BACTERIAL METABOLISM; CATABOLISM; COMPUTER MODEL; GENE CLUSTER; GENETIC CODE; GENETIC ORGANIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PSEUDOMONAS; PSEUDOMONAS CITRONELLOLIS; REGULATORY MECHANISM; RIVER; SEDIMENT; TAXONOMY; TRANSCRIPTION REGULATION;

BASE SEQUENCE; BENZENE; BETA-GALACTOSIDASE; CATECHOL 1,2-DIOXYGENASE; DNA TRANSPOSABLE ELEMENTS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; MIXED FUNCTION OXYGENASES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTAGENESIS; MUTATION; PHENOL; PROTEOME; PSEUDOMONAS; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA;

PSEUDOMONAS; PSEUDOMONAS CITRONELLOLIS; PSEUDOMONAS SP.;

EID: 34648825385     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2007.07.941     Document Type: Article

References (29)

1. Bagdasarian M., Lurz R., Ruckert B., Franklin F.C., Bagdasarian M.M., Frey J., and Timmis K.N. Specific-purpose plasmid cloning vectors. II: Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16 (1981) 237-247
2. Cases I., and de Lorenzo V. The black cat/white cat principle of signal integration in bacterial promoters. EMBO J. 20 (2001) 1-11
3. Craig N.L., and Nash H.A. E. coli integration host factor binds to specific sites in DNA. Cell 39 (1984) 707-716
4. Fischer H.M. Genetic regulation of nitrogen fixation in rhizobia. Microbiol. Rev. 58 (1994) 352-386
5. Genevaux P., Keppel F., Schwager F., Langendijk-Genevaux P.S., Hartl F.U., and Georgopoulos C. In vivo analysis of the overlapping functions of DnaK and trigger factor. EMBO Rep. 5 (2004) 195-200
6. Hartmans S., Smits J.P., van der Werf M.J., Volkering F., and de Bont J.A. Metabolism of styrene oxide and 2-phenylethanol in the styrene-degrading Xanthobacter strain 124X. Appl. Environ. Microbiol. 55 (1989) 2850-2855
7. Harwood C.S., and Parales R.E. The beta-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50 (1996) 553-590
8. Herrero M., de Lorenzo V., and Timmis K.N. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J. Bacteriol. 172 (1990) 6557-6567
9. Iurescia S., Marconi A.M., Tofani D., Gambacorta A., Paterno A., Devirgiliis C., van der Werf M.J., and Zennaro E. Identification and sequencing of beta-myrcene catabolism genes from Pseudomonas sp. strain M1. Appl. Environ. Microbiol. 65 (1999) 2871-2876
10. Kasak L., Horak R., Nurk A., Talvik K., and Kivisaar M. Regulation of the catechol 1,2-dioxygenase- and phenol monooxygenase-encoding pheBA operon in Pseudomonas putida PaW85. J. Bacteriol. 175 (1993) 8038-8042
11. Kim J.Y., Kim J.K., Lee S.O., Kim C.K., and Lee K. Multicomponent phenol hydroxylase-catalysed formation of hydroxyindoles and dyestuffs from indole and its derivatives. Lett. Appl. Microbiol. 41 (2005) 163-168
12. Kohler T., Harayama S., Ramos J.L., and Timmis K.N. Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions. J. Bacteriol. 171 (1989) 4326-4333
13. McFall S.M., Chugani S.A., and Chakrabarty A.M. Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme. Gene 223 (1998) 257-267
14. Miller J.H. Experiments in Molecular Genetics (1972), Cold Spring Harbor, New York
15. Nakazawa T., and Nakazawa A. Pyrocatechase (Pseudomonas). Methods Enzymol. 17 (1970) 518-522
16. O'Connor K.E., Dobson A.D.W., and Hartmans S. Indigo formation by microorganisms expressing styrene monooxygenase activity. Appl. Environ. Microbiol. 63 (1997) 4287-4291
17. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbor Laboratory Press, New York
18. Santos P.M., Benndorf D., and Sá-Correia I. Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 4 (2004) 2640-2652
19. Santos P.M., Di Bartolo I., Blatny J.M., Zennaro E., and Valla S. New broad-host-range promoter probe vectors based on the plasmid RK2 replicon. FEMS Microbiol. Lett. 195 (2001) 91-96
20. Santos P.M., Mignogna G., Heipieper H.J., and Zennaro E. Occurrence and properties of glutathione S-transferases in phenol-degrading Pseudomonas strains. Res. Microbiol. 153 (2002) 89-98
21. Santos, P.M., Roma, V., Benndorf, D., von Bergen, M., Harms, H., Sá-Correia, I. Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1, revealed by quantitative proteomics. OMICS: J. Integr. Biol., doi:10.1089/omi.2007.0009, in press.
22. Schirmer F., Ehrt S., and Hillen W. Expression, inducer spectrum, domain structure, and function of MopR, the regulator of phenol degradation in Acinetobacter calcoaceticus NCIB8250. J. Bacteriol. 179 (1997) 1329-1336
23. Shingler V. Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism. Mol. Microbiol. 19 (1996) 409-416
24. Shingler V. Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour. Environ. Microbiol. 5 (2003) 1226-1241
25. Shingler V., and Moore T. Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J. Bacteriol. 176 (1994) 1555-1560
26. Shingler V., Powlowski J., and Marklund U. Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600. J. Bacteriol. 174 (1992) 711-724
27. Studholme D.J., and Dixon R. Domain architectures of sigma54-dependent transcriptional activators. J. Bacteriol. 185 (2003) 1757-1767
28. Tao Y., Fishman A., Bentley W.E., and Wood T.K. Oxidation of benzene to phenol, catechol, and 1,2,3-trihydroxybenzene by toluene 4-monooxygenase of Pseudomonas mendocina KR1 and toluene 3-monooxygenase of Ralstonia pickettii PKO1. Appl. Environ. Microbiol. 70 (2004) 3814-3820
29. van der Meer J.R., de Vos W.M., Harayama S., and Zehnder A.J. Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol. Rev. 56 (1992) 677-694