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Volumn 49, Issue 8, 2007, Pages 657-667

Comparative genomics identifies a cis-regulatory module that activates transcription in specific subsets of neurons in Ciona intestinalis larvae

Author keywords

Ascidian; Ciona; Comparative genomics; Neuron; Transcriptional regulation

Indexed keywords

GREEN FLUORESCENT PROTEIN; GUANINE NUCLEOTIDE BINDING PROTEIN ALPHA SUBUNIT; PROTEIN SUBUNIT;

EID: 34548804473     PISSN: 00121592     EISSN: 1440169X     Source Type: Journal    
DOI: 10.1111/j.1440-169X.2007.00960.x     Document Type: Article
Times cited : (5)

References (39)
  • 1
    • 0031934225 scopus 로고    scopus 로고
    • Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6
    • Ansari-Lari, M. A., Oeltjen, J. C., Schwartz, S. et al. 1998. Comparative sequence analysis of a gene-rich cluster at human chromosome 12p13 and its syntenic region in mouse chromosome 6. Genome Res. 8, 29 40.
    • (1998) Genome Res. , vol.8 , pp. 29-40
    • Ansari-Lari, M.A.1    Oeltjen, J.C.2    Schwartz, S.3
  • 2
    • 14244268949 scopus 로고    scopus 로고
    • An enhancer trap in the ascidian Ciona intestinalis identifies enhancers of its Musashi orthologous gene
    • Awazu, S., Sasaki, A., Matsuoka, T., Satoh, N. Sasakura, Y. 2004. An enhancer trap in the ascidian Ciona intestinalis identifies enhancers of its Musashi orthologous gene. Dev. Biol. 275, 459 472.
    • (2004) Dev. Biol. , vol.275 , pp. 459-472
    • Awazu, S.1    Sasaki, A.2    Matsuoka, T.3    Satoh, N.4    Sasakura, Y.5
  • 3
    • 0345119182 scopus 로고    scopus 로고
    • Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors
    • Bertrand, V., Hudson, C., Caillol, D., Popovici, C. Lemaire, P. 2003. Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors. Cell 115, 615 627.
    • (2003) Cell , vol.115 , pp. 615-627
    • Bertrand, V.1    Hudson, C.2    Caillol, D.3    Popovici, C.4    Lemaire, P.5
  • 4
    • 0242418246 scopus 로고    scopus 로고
    • Phylogenetic shadowing of primate sequences to find functional regions of the human genome
    • Boffelli, D., McAuliffe, J., Ovcharenko, D. et al. 2003. Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299, 1391 1394.
    • (2003) Science , vol.299 , pp. 1391-1394
    • Boffelli, D.1    McAuliffe, J.2    Ovcharenko, D.3
  • 5
    • 10944230834 scopus 로고    scopus 로고
    • Intraspecies sequence comparisons for annotating genomes
    • Boffelli, D., Weer, C. V., Weng, L. et al. 2004. Intraspecies sequence comparisons for annotating genomes. Genome Res. 14, 2406 2411.
    • (2004) Genome Res. , vol.14 , pp. 2406-2411
    • Boffelli, D.1    Weer, C.V.2    Weng, L.3
  • 6
    • 0033992038 scopus 로고    scopus 로고
    • Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi
    • Byrd, J. Lambert, C. C. 2000. Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi. Mol. Reprod. Dev. 55, 109 116.
    • (2000) Mol. Reprod. Dev. , vol.55 , pp. 109-116
    • Byrd, J.1    Lambert, C.C.2
  • 7
    • 11144335316 scopus 로고    scopus 로고
    • A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodæum
    • Christiaen, L., Bourrat, F. Joly, J. S. 2005. A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodæum. Dev. Biol. 277, 557 566.
    • (2005) Dev. Biol. , vol.277 , pp. 557-566
    • Christiaen, L.1    Bourrat, F.2    Joly, J.S.3
  • 8
    • 0031055201 scopus 로고    scopus 로고
    • Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis
    • Corbo, J. C., Levine, M. Zeller, R. W. 1997. Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 124, 589 602.
    • (1997) Development , vol.124 , pp. 589-602
    • Corbo, J.C.1    Levine, M.2    Zeller, R.W.3
  • 9
    • 2242464840 scopus 로고    scopus 로고
    • The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
    • 87 authors).
    • Dehal, P., Satou, Y., Campbell, R. K. et al 87 authors). 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298, 2157 2167.
    • (2002) Science , vol.298 , pp. 2157-2167
    • Dehal, P.1    Satou, Y.2    Campbell, R.K.3    Al, E.4
  • 10
    • 33750282252 scopus 로고    scopus 로고
    • Morphological and gene expression similarities suggest that the ascidian neural gland may be osmoregulatory and homologous to vertebrate peri-ventricular organs
    • Deyts, C., Casane, D., Vernier, P., Bourrat, F. Joly, J. S. 2006. Morphological and gene expression similarities suggest that the ascidian neural gland may be osmoregulatory and homologous to vertebrate peri-ventricular organs. Eur. J. Neurosci. 24, 2299 2308.
    • (2006) Eur. J. Neurosci. , vol.24 , pp. 2299-2308
    • Deyts, C.1    Casane, D.2    Vernier, P.3    Bourrat, F.4    Joly, J.S.5
  • 12
    • 0036952306 scopus 로고    scopus 로고
    • Region specific gene expressions in the central nervous system of the ascidian embryo
    • Imai, K. S., Satoh, N. Satou, Y. 2002. Region specific gene expressions in the central nervous system of the ascidian embryo. Gene Expr. Patterns 2, 319 321.
    • (2002) Gene Expr. Patterns , vol.2 , pp. 319-321
    • Imai, K.S.1    Satoh, N.2    Satou, Y.3
  • 13
    • 0042090210 scopus 로고    scopus 로고
    • Targeted knockdown of an opsin gene inhibits the swimming behavior photoresponse of ascidian larvae
    • Inada, K., Horie, T., Kusakabe, T. Tsuda, M. 2003. Targeted knockdown of an opsin gene inhibits the swimming behavior photoresponse of ascidian larvae. Neurosci. Lett. 347, 167 170.
    • (2003) Neurosci. Lett. , vol.347 , pp. 167-170
    • Inada, K.1    Horie, T.2    Kusakabe, T.3    Tsuda, M.4
  • 14
    • 10944248926 scopus 로고    scopus 로고
    • Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance
    • Johnson, D. S., Davidson, B., Brown, C. D., Smith, W. C. Sidow, A. 2004. Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance. Genome Res. 14, 2448 2456.
    • (2004) Genome Res. , vol.14 , pp. 2448-2456
    • Johnson, D.S.1    Davidson, B.2    Brown, C.D.3    Smith, W.C.4    Sidow, A.5
  • 15
    • 18044384429 scopus 로고    scopus 로고
    • Decoding cis-regulatory systems in ascidians
    • Kusakabe, T. 2005. Decoding cis-regulatory systems in ascidians. Zool. Sci. 22, 129 146.
    • (2005) Zool. Sci. , vol.22 , pp. 129-146
    • Kusakabe, T.1
  • 16
    • 0035964941 scopus 로고    scopus 로고
    • Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis
    • Kusakabe, T., Kusakabe, R., Kawakami, I., Satou, Y., Satoh, N. Tsuda, M. 2001. Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis. FEBS Lett. 506, 69 72.
    • (2001) FEBS Lett. , vol.506 , pp. 69-72
    • Kusakabe, T.1    Kusakabe, R.2    Kawakami, I.3    Satou, Y.4    Satoh, N.5    Tsuda, M.6
  • 17
    • 0037083445 scopus 로고    scopus 로고
    • Gene expression profiles in tadpole larvae of Ciona intestinalis
    • Kusakabe, T., Yoshida, R., Kawakami, I. et al. 2002. Gene expression profiles in tadpole larvae of Ciona intestinalis. Dev. Biol. 242, 188 203.
    • (2002) Dev. Biol. , vol.242 , pp. 188-203
    • Kusakabe, T.1    Yoshida, R.2    Kawakami, I.3
  • 18
    • 0344009619 scopus 로고    scopus 로고
    • Structure, expression, and cluster organization of genes encoding gonadotropin-releasing hormone receptors found in the neural complex of the ascidian Ciona intestinalis
    • Kusakabe, T., Mishima, S., Shimada, I., Kitajima, Y. Tsuda, M. 2003. Structure, expression, and cluster organization of genes encoding gonadotropin-releasing hormone receptors found in the neural complex of the ascidian Ciona intestinalis. Gene 322, 77 84.
    • (2003) Gene , vol.322 , pp. 77-84
    • Kusakabe, T.1    Mishima, S.2    Shimada, I.3    Kitajima, Y.4    Tsuda, M.5
  • 19
    • 9944265439 scopus 로고    scopus 로고
    • Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona
    • Kusakabe, T., Yoshida, R., Ikeda, Y. Tsuda, M. 2004. Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona. Dev. Biol. 276, 563 580.
    • (2004) Dev. Biol. , vol.276 , pp. 563-580
    • Kusakabe, T.1    Yoshida, R.2    Ikeda, Y.3    Tsuda, M.4
  • 20
    • 3042540455 scopus 로고    scopus 로고
    • The neurobiology of the ascidian tadpole larva: Recent developments in an ancient chordate
    • Meinertzhagen, I. A., Lemaire, P. Okamura, Y. 2004. The neurobiology of the ascidian tadpole larva: recent developments in an ancient chordate. Annu. Rev. Neurosci. 27, 453 485.
    • (2004) Annu. Rev. Neurosci. , vol.27 , pp. 453-485
    • Meinertzhagen, I.A.1    Lemaire, P.2    Okamura, Y.3
  • 21
    • 0038659010 scopus 로고    scopus 로고
    • Large-scale characterization of genes specific to the larval nervous system in the ascidian Ciona intestinalis
    • Mochizuki, Y., Satou, Y. Satoh, N. 2003. Large-scale characterization of genes specific to the larval nervous system in the ascidian Ciona intestinalis. Genesis 36, 62 71.
    • (2003) Genesis , vol.36 , pp. 62-71
    • Mochizuki, Y.1    Satou, Y.2    Satoh, N.3
  • 22
    • 0036428551 scopus 로고    scopus 로고
    • Ascidian arrestin (Ci-arr), the origin of the visual and nonvisual arrestins of vertebrate
    • Nakagawa, M., Orii, H., Yoshida, N. et al. 2002. Ascidian arrestin (Ci-arr), the origin of the visual and nonvisual arrestins of vertebrate. Eur. J. Biochem. 269, 5112 5118.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 5112-5118
    • Nakagawa, M.1    Orii, H.2    Yoshida, N.3
  • 23
    • 0142084743 scopus 로고    scopus 로고
    • Scanning human gene deserts from long-range enhancers
    • Nobrega, M. A., Ovcharenko, I., Afzal, V. Rubin, E. M. 2003. Scanning human gene deserts from long-range enhancers. Science 302, 413.
    • (2003) Science , vol.302 , pp. 413
    • Nobrega, M.A.1    Ovcharenko, I.2    Afzal, V.3    Rubin, E.M.4
  • 24
    • 0034979688 scopus 로고    scopus 로고
    • Neuronal form in the central nervous system of the tadpole larva of the ascidian Ciona intestinalis.
    • Okada, T., MacIsaac, S. S., Katsuyama, Y., Okamura, Y. Meinertzhagen, I. A. 2001. Neuronal form in the central nervous system of the tadpole larva of the ascidian Ciona intestinalis. Biol. Bull. 200, 252 256.
    • (2001) Biol. Bull. , vol.200 , pp. 252-256
    • Okada, T.1    MacIsaac, S.S.2    Katsuyama, Y.3    Okamura, Y.4    Meinertzhagen, I.A.5
  • 25
    • 0037091083 scopus 로고    scopus 로고
    • The development of three identified motor neurons in the larva of an ascidian, Halocynthia roretzi
    • Okada, T., Katsuyama, Y., Ono, F. Okamura, Y. 2002. The development of three identified motor neurons in the larva of an ascidian, Halocynthia roretzi. Dev. Biol. 244, 278 292.
    • (2002) Dev. Biol. , vol.244 , pp. 278-292
    • Okada, T.1    Katsuyama, Y.2    Ono, F.3    Okamura, Y.4
  • 26
    • 2642540829 scopus 로고    scopus 로고
    • The role of pigment cells in the brain of ascidian larva
    • Sakurai, D., Goda, M., Kohmura, Y. et al. 2004. The role of pigment cells in the brain of ascidian larva. J. Comp. Neurol. 475, 70 82.
    • (2004) J. Comp. Neurol. , vol.475 , pp. 70-82
    • Sakurai, D.1    Goda, M.2    Kohmura, Y.3
  • 27
    • 19944407537 scopus 로고    scopus 로고
    • Tachykinin and tachykinin receptor of an ascidian, Ciona intestinalis
    • Satake, H., Ogasawara, M., Kawada, T. et al. 2004. Tachykinin and tachykinin receptor of an ascidian, Ciona intestinalis. J. Biol. Chem. 279, 53 798 53 805.
    • (2004) J. Biol. Chem. , vol.279 , pp. 53798-53805
    • Satake, H.1    Ogasawara, M.2    Kawada, T.3
  • 28
    • 33845427657 scopus 로고    scopus 로고
    • Further EST analysis of endocrine genes that are preferentially expressed in the neural complex of Ciona intestinalis: Receptor and enzyme genes associated with endocrine system in the neural complex
    • Sekiguchi, T., Kawashima, T., Satou, Y. Satoh, N. 2007. Further EST analysis of endocrine genes that are preferentially expressed in the neural complex of Ciona intestinalis: receptor and enzyme genes associated with endocrine system in the neural complex. General Comp. Endocrinol. 150, 233 245.
    • (2007) General Comp. Endocrinol. , vol.150 , pp. 233-245
    • Sekiguchi, T.1    Kawashima, T.2    Satou, Y.3    Satoh, N.4
  • 29
    • 0031972077 scopus 로고    scopus 로고
    • Nervous network in larvae of the ascidian Ciona intestinalis.
    • Takamura, K. 1998. Nervous network in larvae of the ascidian Ciona intestinalis. Dev. Genes Evol. 208, 1 8.
    • (1998) Dev. Genes Evol. , vol.208 , pp. 1-8
    • Takamura, K.1
  • 31
    • 0037016770 scopus 로고    scopus 로고
    • Functional interaction between bovine rhodopsin and G protein transducin
    • Terakita, A., Yamashita, T., Nimbari, N., Kojima, D. Shichida, Y. 2002. Functional interaction between bovine rhodopsin and G protein transducin. J. Biol. Chem. 277, 40 46.
    • (2002) J. Biol. Chem. , vol.277 , pp. 40-46
    • Terakita, A.1    Yamashita, T.2    Nimbari, N.3    Kojima, D.4    Shichida, Y.5
  • 33
    • 0041465867 scopus 로고    scopus 로고
    • Comparative analyses of multi-species sequences from targeted genomic regions
    • Thomas, J. W., Touchman, J. W., Blakesley, R. W. et al. 2003. Comparative analyses of multi-species sequences from targeted genomic regions. Nature 424, 788 793.
    • (2003) Nature , vol.424 , pp. 788-793
    • Thomas, J.W.1    Touchman, J.W.2    Blakesley, R.W.3
  • 34
    • 0242578608 scopus 로고    scopus 로고
    • Origin of the vertebrate visual cycle. II. Visual cycle proteins are localized in whole brain including photoreceptor cells of a primitive chordate
    • Tsuda, M., Kusakabe, T., Iwamoto, H. et al. 2003a. Origin of the vertebrate visual cycle. II. Visual cycle proteins are localized in whole brain including photoreceptor cells of a primitive chordate. Vision Res. 43, 3045 3053.
    • (2003) Vision Res. , vol.43 , pp. 3045-3053
    • Tsuda, M.1    Kusakabe, T.2    Iwamoto, H.3
  • 35
    • 0038373678 scopus 로고    scopus 로고
    • Direct evidence for the role of pigment cells in the brain of ascidian larvae by laser ablation
    • Tsuda, M., Sakurai, D. Goda, M. 2003b. Direct evidence for the role of pigment cells in the brain of ascidian larvae by laser ablation. J. Exp. Biol. 206, 1409 1417.
    • (2003) J. Exp. Biol. , vol.206 , pp. 1409-1417
    • Tsuda, M.1    Sakurai, D.2    Goda, M.3
  • 36
    • 0031919446 scopus 로고    scopus 로고
    • Tripartite organization of the ancestral chordate brain and the antiquity of placodes: Insights from ascidian Pax-2/5/8, Hox and Otx genes
    • Wada, H., Saiga, H., Satoh, N. Holland, P. W. 1998. Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8, Hox and Otx genes. Development 125, 1113 1122.
    • (1998) Development , vol.125 , pp. 1113-1122
    • Wada, H.1    Saiga, H.2    Satoh, N.3    Holland, P.W.4
  • 37
    • 1842454958 scopus 로고    scopus 로고
    • A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis
    • Yagi, K., Satou, Y. Satoh, N. 2004. A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis. Development 131, 1279 1288.
    • (2004) Development , vol.131 , pp. 1279-1288
    • Yagi, K.1    Satou, Y.2    Satoh, N.3
  • 38
    • 0036826186 scopus 로고    scopus 로고
    • Central nervous system-specific expression of G protein α subunits in the ascidian Ciona intestinalis.
    • Yoshida, R., Kusakabe, T., Kamatani, M., Daitoh, M. Tsuda, M. 2002. Central nervous system-specific expression of G protein α subunits in the ascidian Ciona intestinalis. Zool. Sci. 19, 1079 1088.
    • (2002) Zool. Sci. , vol.19 , pp. 1079-1088
    • Yoshida, R.1    Kusakabe, T.2    Kamatani, M.3    Daitoh, M.4    Tsuda, M.5


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