Action at distance along the DNA: A random jump model on enhancer action

Journal of Theoretical Biology

Volumn 248, Issue 4, 2007, Pages 696-705

  Murugan, Rajamanickam ^a  

^a Center for Biomolecular Structure   (United States)

Author keywords

Action at distance; DNA protein interactions; Enhancer action; Enhancer memory

Indexed keywords

DNA; RNA POLYMERASE;

DNA; GENE EXPRESSION; GENOME; MODEL; POLYMER; PROTEIN; RNA;

ARTICLE; DNA DETERMINATION; EUKARYOTIC CELL; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; RNA SEQUENCE;

ANIMALS; DNA; DNA-BINDING PROTEINS; ENHANCER ELEMENTS (GENETICS); MODELS, GENETIC; TRANS-ACTIVATION (GENETICS);

EUKARYOTA;

EID: 34548783898     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2007.06.003     Document Type: Article

References (23)

1. Berg O.G., Winter R.B., and von Hippel P.H. Biochemistry 20 (1981) 6929
2. Blackwood E.M., and Kadonaga J.T. Science 281 (1998) 60
3. Bondarenko V., Liu Y., Ninfa A., and Studitsky V.M. Nucleic Acids Res. 30 (2002) 636
4. Fiering S., Whitelaw E., and Martin D.I.K. BioEssays 22 (2000) 381
5. Herendeen D.R., Kassavetis G.A., and Geidusckek E.P. Science 256 (1992) 1298
6. Heuchel R., Matthias P., and Schaffner W. Nucleic Acids Res. 17 (1989) 8931
7. Khoury G., and Gruss P. Cell 33 (1973) 313
8. Robbins P.D., Rio D.C., and Botcha M.R. Mol. Cell Biol. 6 (1986) 1283
9. Landau L.D., and Lifshitz E.M. Statistical Physics (1958), Pergamon, London p. 478
10. Lewin B. Genes VIII (2004), Oxford University Press, London
11. Liu Y., Bondarenko V., Ninfa A., and Studitsky V.M. Proc. Natl Acad. Sci. USA 98 (2001) 14883
12. Murugan R. Phys. Rev. E 69 (2004) 011911
13. Murugan R. J. Phys. A: Math. Gen. 39 (2006) 1575
14. Murugan R. Biophys. Chem. 120 (2006) 143
15. Ptashne M., and Gann A. Nature 386 (1997) 569
16. Rippe K., von Hippel P.H., and Langowski J. Trends Biochem. Sci. 20 (1995) 500
17. Serfling E., Mastin J., and Schaffner W. Trends Genet. 1 (1985) 224
18. Su W., Porter S., Kustu S., and Echols H. Proc. Natl Acad. Sci. USA 87 (1990) 5504
19. Petrascheck M., Escher D., Mahmoudi T., Verrijzer C.P., Schaffner W., and Barberis A. Nucleic Acids Res. 33 (2005) 3743
20. von Hippel P.H., and Berg O.G. J. Biol. Chem. 15 (1989) 675
21. Walters M.C., Fiering S., Eidemiller J., Magis W., Groudine M., and Martin D.I. Proc. Natl Acad. Sci. USA 92 (1995) 7125
22. Wang J.C., and Giaever G.N. Science 240 (1988) 300
23. Winter R.B., Berg O.G., and von Hippel P.H. Biochemistry 20 (1981) 6961