-
1
-
-
0043092351
-
Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes
-
Beerenwinkel,N. et al. (2003) Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res, 31, 3850-3855.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3850-3855
-
-
Beerenwinkel, N.1
-
2
-
-
0037062513
-
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype
-
Beerenwinkel,N. et al. (2002) Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Nalt Acad. Sci. USA, 99, 8271-8276.
-
(2002)
Proc. Nalt Acad. Sci. USA
, vol.99
, pp. 8271-8276
-
-
Beerenwinkel, N.1
-
4
-
-
33646752804
-
-
Danziger,S. A. et al. (2006) Functional census of mutation sequence spaces: The example of p53 cancer rescue mutants. IEEE/ACM Trans. Comput. Biol. Bioinform., 3, 114-125.
-
Danziger,S. A. et al. (2006) Functional census of mutation sequence spaces: The example of p53 cancer rescue mutants. IEEE/ACM Trans. Comput. Biol. Bioinform., 3, 114-125.
-
-
-
-
5
-
-
33845353741
-
Analysis of HIV-1 pol sequences using bayesian networks: Implications for drug resistance
-
Deforche,K. et al. (2006) Analysis of HIV-1 pol sequences using bayesian networks: Implications for drug resistance. Bioinformatics 22, 2975-2979.
-
(2006)
Bioinformatics
, vol.22
, pp. 2975-2979
-
-
Deforche, K.1
-
6
-
-
0036161257
-
Linear programming boosting via column generation
-
Demiriz,A. et al. (2002) Linear programming boosting via column generation. Mach. Learn., 46, 225-254.
-
(2002)
Mach. Learn
, vol.46
, pp. 225-254
-
-
Demiriz, A.1
-
7
-
-
0034250160
-
An experimental comparison of three methods for constructing ensembles of decision trees: Bagging, boosting, and randomization
-
Dietterich,T.G. (2000) An experimental comparison of three methods for constructing ensembles of decision trees: Bagging, boosting, and randomization. Mach. Learn., 40, 139-157.
-
(2000)
Mach. Learn
, vol.40
, pp. 139-157
-
-
Dietterich, T.G.1
-
8
-
-
0042926531
-
Non-parametric methods to predict HIV drug susceptibility tphenotype from genotype
-
Dirienzo,A.G. et al. (2003) Non-parametric methods to predict HIV drug susceptibility tphenotype from genotype. Stat. Med., 22 2785-2798.
-
(2003)
Stat. Med
, vol.22
, pp. 2785-2798
-
-
Dirienzo, A.G.1
-
9
-
-
0036189326
-
Characterizing the relationship between HIV-1 genotype and phenotype: Prediction-based classification
-
Foulkes,A.S. and DeGruttola,V. (2002) Characterizing the relationship between HIV-1 genotype and phenotype: Prediction-based classification. Biometrics, 58, 146-156.
-
(2002)
Biometrics
, vol.58
, pp. 146-156
-
-
Foulkes, A.S.1
DeGruttola, V.2
-
10
-
-
0031211090
-
A decision-theoretic generalization of on-line learning and an application to boosting
-
Freund,Y. and Schapire,R.E. (1996) A decision-theoretic generalization of on-line learning and an application to boosting. J. Comput. Syst. Sci., 55, 119-139.
-
(1996)
J. Comput. Syst. Sci
, vol.55
, pp. 119-139
-
-
Freund, Y.1
Schapire, R.E.2
-
11
-
-
0030048748
-
Multidrug-resistant human immunodeficiency virus type 1 strains resulting from combination antiretroviral therapy
-
Iversen,A.K.N. et al. (1996) Multidrug-resistant human immunodeficiency virus type 1 strains resulting from combination antiretroviral therapy. J. Virol., 70, 1086-1090.
-
(1996)
J. Virol
, vol.70
, pp. 1086-1090
-
-
Iversen, A.K.N.1
-
12
-
-
2142712566
-
Cross-resistance patterns among HIV protease inhibitors
-
Kozal,M. (2004) Cross-resistance patterns among HIV protease inhibitors. AIDS Patient Care and STDs, 18, 199-208.
-
(2004)
AIDS Patient Care and STDs
, vol.18
, pp. 199-208
-
-
Kozal, M.1
-
13
-
-
84898968571
-
An application of boosting to graph classification
-
MIT Press, Cambridge, MA, pp
-
Kudo,T. et al. (2005) An application of boosting to graph classification. In Advances in Neural Information Processing Systems 17. MIT Press, Cambridge, MA, pp. 729-736.
-
(2005)
Advances in Neural Information Processing Systems 17
, pp. 729-736
-
-
Kudo, T.1
-
15
-
-
33748848279
-
Bioinformatics-assisted anti-HIV therapy
-
Lengauer,T. and Sing,T. (2006) Bioinformatics-assisted anti-HIV therapy. Nature, 4, 790-797.
-
(2006)
Nature
, vol.4
, pp. 790-797
-
-
Lengauer, T.1
Sing, T.2
-
16
-
-
84867658655
-
Computing optimal hypotheses efficiently for boosting
-
Morishita,S. (2001) Computing optimal hypotheses efficiently for boosting. In Discovery Science, pp.471-481.
-
(2001)
Discovery Science
, pp. 471-481
-
-
Morishita, S.1
-
17
-
-
34548713116
-
Mining the quantitative trait loci associated with oral glucose tolerance in the oletf rat
-
Nakaya,A. et al. (2000) Mining the quantitative trait loci associated with oral glucose tolerance in the oletf rat. In Pacific Symposium on Biocomputing, pp.364-376.
-
(2000)
Pacific Symposium on Biocomputing
, pp. 364-376
-
-
Nakaya, A.1
-
18
-
-
33644855246
-
Accurate prediction of HIV-1 drug response from the reverse transciptase and protease amino acid sequences using sparse models created by convex optimization
-
Rabinowitz,M. et al. (2006) Accurate prediction of HIV-1 drug response from the reverse transciptase and protease amino acid sequences using sparse models created by convex optimization. Bioinformatics 22, 541-549.
-
(2006)
Bioinformatics
, vol.22
, pp. 541-549
-
-
Rabinowitz, M.1
-
19
-
-
0037250521
-
Human immunodeficiency virus reverse transcriptase and protease sequence database
-
Rhee,S.Y. et al. (2003) Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids. Res., 31, 298-303.
-
(2003)
Nucleic Acids. Res
, vol.31
, pp. 298-303
-
-
Rhee, S.Y.1
-
20
-
-
33751235598
-
Genotypic predictors of human immunodeficiency virus type 1 drug resistance
-
Rhee,S.Y. et al. (2006) Genotypic predictors of human immunodeficiency virus type 1 drug resistance. Proc. Natl Acad. Sci. USA., 103, 17355-17360.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 17355-17360
-
-
Rhee, S.Y.1
-
21
-
-
0026756720
-
Functional analysis of HIV-1 reverse transcriptase amino acids involved in resistance to multiple nonnucleoside inhibitors
-
Sardana,V.V. et al. (1992) Functional analysis of HIV-1 reverse transcriptase amino acids involved in resistance to multiple nonnucleoside inhibitors. J. Biol. Chem., 267, 17526-17530.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 17526-17530
-
-
Sardana, V.V.1
-
22
-
-
0003408420
-
-
MIT Press
-
Scholköpf,B. and Smola,A. J. (2002) Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond. MIT Press.
-
(2002)
Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond
-
-
Scholköpf, B.1
Smola, A.J.2
-
23
-
-
34548766761
-
Mutagenetic tree fisher kernel improves prediction of HIV drug resistance from viral genotype
-
Schölkopf,B, Platt,J. and Hoffman,T, eds, MIT Press, Cambridge, MA, pp
-
Sing,T. and Beerenwinkel,N. (2007) Mutagenetic tree fisher kernel improves prediction of HIV drug resistance from viral genotype. In Schölkopf,B., Platt,J. and Hoffman,T. (eds) Advances in Neural Information Processing Systems 19. MIT Press, Cambridge, MA, pp. 1297-1304.
-
(2007)
Advances in Neural Information Processing Systems 19
, pp. 1297-1304
-
-
Sing, T.1
Beerenwinkel, N.2
-
24
-
-
33646418385
-
Characterization of novel HIV drug resistance mutations using clustering, multidimensional scaling and SVM-based feature ranking
-
Sing,T. et al. (2005) Characterization of novel HIV drug resistance mutations using clustering, multidimensional scaling and SVM-based feature ranking. In ninth European Conference on Principles and Practice of Knowledge Discovery in Databases, pp.285-296.
-
(2005)
ninth European Conference on Principles and Practice of Knowledge Discovery in Databases
, pp. 285-296
-
-
Sing, T.1
-
25
-
-
0033296299
-
Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones
-
Sturm,J.F. (1999) Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones. Opt. Meth. Softw., 11-12, 625-653.
-
(1999)
Opt. Meth. Softw
, vol.11-12
, pp. 625-653
-
-
Sturm, J.F.1
-
26
-
-
85194972808
-
Regression shrinkage and selection via the LASSO
-
Tibshrani,R. (1996) Regression shrinkage and selection via the LASSO. J. R. Stat. Soc. Ser. B Stat. Methodol., 58 (1), 267-288.
-
(1996)
J. R. Stat. Soc. Ser. B Stat. Methodol
, vol.58
, Issue.1
, pp. 267-288
-
-
Tibshrani, R.1
-
27
-
-
77953564323
-
LCM ver.3: Collaboration of array, bitmap and prefix tree for frequent itemset mining. In OSDM '05
-
Uno,T. et al. (2005) LCM ver.3: Collaboration of array, bitmap and prefix tree for frequent itemset mining. In OSDM '05: Proceedings of the 1st International Workshop on Open Source Data Mining, 77-86.
-
(2005)
Proceedings of the 1st International Workshop on Open Source Data Mining
, pp. 77-86
-
-
Uno, T.1
-
28
-
-
33845663097
-
An accurate and interpretable model for siRNA efficacy prediction
-
Vert,J.-P. et al. (2006) An accurate and interpretable model for siRNA efficacy prediction. BMC Bioinformatics, 7, 520.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 520
-
-
Vert, J.-P.1
-
29
-
-
30844469498
-
Nucleoside and nucleotide inhibitors of HIV-1 replication
-
Vivet-Boudou,V. et al. (2006) Nucleoside and nucleotide inhibitors of HIV-1 replication. Cell. Mole. Life Sci., 63, 163-186.
-
(2006)
Cell. Mole. Life Sci
, vol.63
, pp. 163-186
-
-
Vivet-Boudou, V.1
-
30
-
-
0141724633
-
Enhanced prediction of lopinavir resistance from genotype by use of artificial neural networks
-
Wang,D. and Larder,B. (2003) Enhanced prediction of lopinavir resistance from genotype by use of artificial neural networks. J. Infect. Dis. 188, 653-660.
-
(2003)
J. Infect. Dis
, vol.188
, pp. 653-660
-
-
Wang, D.1
Larder, B.2
-
31
-
-
22344434546
-
Discovering functional transcription-factor combinations in the human cell cycle
-
Zhu,Z. et al. (2005) Discovering functional transcription-factor combinations in the human cell cycle. Genome Res., 15, 845-855.
-
(2005)
Genome Res
, vol.15
, pp. 845-855
-
-
Zhu, Z.1
|