-
1
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey,T.L. and Elkan,C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
2
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
Burset,M. and Guigo,R. (1996) Evaluation of gene structure prediction programs. Genomics, 34, 353-367.
-
(1996)
Genomics
, vol.34
, pp. 353-367
-
-
Burset, M.1
Guigo, R.2
-
3
-
-
0000526802
-
Limit distribution of maximal non-aligned two-sequence segmental score
-
Dembo,A. et al. (1994) Limit distribution of maximal non-aligned two-sequence segmental score. Ann. Prob., 22, 2022-2039.
-
(1994)
Ann. Prob
, vol.22
, pp. 2022-2039
-
-
Dembo, A.1
-
4
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
Hertz,G.Z. et al. (1990) Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci., 6, 81-92.
-
(1990)
Comput. Appl. Biosci
, vol.6
, pp. 81-92
-
-
Hertz, G.Z.1
-
5
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
Hertz,G.Z. and Stormo,G.D. (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15, 563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
7
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin,S. and Altschul,S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
8
-
-
18844460155
-
sFFT: A faster accurate computation of the p-value of the entropy score
-
Keich,U. (2005) sFFT: A faster accurate computation of the p-value of the entropy score. J. Comput. Biol., 12, 416-430.
-
(2005)
J. Comput. Biol
, vol.12
, pp. 416-430
-
-
Keich, U.1
-
9
-
-
0036677662
-
TFBS: Computational framework for transcription factor binding site analysis
-
Lenhard,B. and Wasserman,W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics, 18 1135-1136.
-
(2002)
Bioinformatics
, vol.18
, pp. 1135-1136
-
-
Lenhard, B.1
Wasserman, W.W.2
-
10
-
-
0033059370
-
Bayesian inference on biopolymer models
-
Liu,J.S. and Lawrence,C.E. (1999) Bayesian inference on biopolymer models. Bioinformatics, 15, 38-52.
-
(1999)
Bioinformatics
, vol.15
, pp. 38-52
-
-
Liu, J.S.1
Lawrence, C.E.2
-
11
-
-
84950424966
-
Bayesian models for multiple local sequence alignment and Gibbs sampling strategies
-
Liu,J.S. et al. (1995) Bayesian models for multiple local sequence alignment and Gibbs sampling strategies. J. Am. Stat. Association, 90, 1156-1170.
-
(1995)
J. Am. Stat. Association
, vol.90
, pp. 1156-1170
-
-
Liu, J.S.1
-
12
-
-
25444443637
-
Bayesian coestimation of phylogeny and sequence alignment
-
Lunter,G. et al. (2005) Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinformatics, 6, 83-93.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 83-93
-
-
Lunter, G.1
-
13
-
-
34447298968
-
Bayesian inference, entropy, and the multinomial distribution
-
Technical Report
-
Minka,T. (2003) Bayesian inference, entropy, and the multinomial distribution. Technical Report.
-
(2003)
-
-
Minka, T.1
-
14
-
-
28444479592
-
Computing the P-value of the information content from an alignment of multiple sequences
-
Nagarajan,N. et al. (2005) Computing the P-value of the information content from an alignment of multiple sequences. Bioinformatics, 21 (Suppl. 1), i311-i318.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Nagarajan, N.1
-
15
-
-
0347125328
-
JASPAR: An open-access database for eukaryotic transcription factor binding profiles
-
Sandelin,A. et al. (2004) JASPAR: An open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 32, D91-D94.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Sandelin, A.1
-
16
-
-
33747863926
-
BAli-Phy: Simultaneous Bayesian inference of alignment and phylogeny
-
Suchard,M.A. and Redelings,B.D. (2006) BAli-Phy: Simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics, 22, 2047-2048.
-
(2006)
Bioinformatics
, vol.22
, pp. 2047-2048
-
-
Suchard, M.A.1
Redelings, B.D.2
-
17
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa,M. et al. (2005) Assessing computational tools for the discovery of transcription factor binding sites. Nat. Biotechnol., 23, 137-144.
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 137-144
-
-
Tompa, M.1
-
18
-
-
0041620271
-
Regulatory sequence analysis tools
-
van Helden,J. (2003) Regulatory sequence analysis tools. Nucleic Acids Res., 31, 3593-3596.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3593-3596
-
-
van Helden, J.1
-
19
-
-
0036493242
-
BALSA: Bayesian algorithm for local sequence alignment
-
Webb,B.J. et al. (2002) BALSA: Bayesian algorithm for local sequence alignment. Nucleic Acids Res., 30, 1268-1277.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1268-1277
-
-
Webb, B.J.1
-
20
-
-
0001972601
-
The large-sample distribution of the likelihood ratio for testing composite hypotheses
-
Wilks,S.S. (1938) The large-sample distribution of the likelihood ratio for testing composite hypotheses. Ann. Math. Stat., 9, 60-62.
-
(1938)
Ann. Math. Stat
, vol.9
, pp. 60-62
-
-
Wilks, S.S.1
-
21
-
-
0031874740
-
Bayesian adaptive sequence alignment algorithms
-
Zhu,J. et al. (1998) Bayesian adaptive sequence alignment algorithms. Bioinformatics, 14, 25-39.
-
(1998)
Bioinformatics
, vol.14
, pp. 25-39
-
-
Zhu, J.1
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