메뉴 건너뛰기




Volumn 46, Issue 37, 2007, Pages 10517-10527

Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "A tale of two mechanisms"

Author keywords

[No Author keywords available]

Indexed keywords

COCRYSTALLIZATION; INACTIVATORS; PROTEIN STRUCTURE; STRUCTURAL MODELS;

EID: 34548678883     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi700663n     Document Type: Article
Times cited : (14)

References (43)
  • 1
    • 0000178269 scopus 로고
    • Suicide Enzyme Inactivators
    • Abeles, R. H., and Maycock, A. L. (1976) Suicide Enzyme Inactivators, Acc. Chem. Res. 9 (9), 313-319.
    • (1976) Acc. Chem. Res , vol.9 , Issue.9 , pp. 313-319
    • Abeles, R.H.1    Maycock, A.L.2
  • 2
    • 0016184254 scopus 로고
    • cat inhibitors
    • cat inhibitors, Science 185 (4148), 320-324.
    • (1974) Science , vol.185 , Issue.4148 , pp. 320-324
    • Rando, R.R.1
  • 3
    • 0028074733 scopus 로고
    • Antimycobacterial drugs
    • Heifets, L. B. (1994) Antimycobacterial drugs, Semin. Respir. Infect. 9 (2), 84-103.
    • (1994) Semin. Respir. Infect , vol.9 , Issue.2 , pp. 84-103
    • Heifets, L.B.1
  • 4
    • 0021829938 scopus 로고
    • 4-Amino-4,5- dihydrothiophene-2-carboxlic acid
    • Adams, J. L., Chen, T.-M., and Brain, W. M. (1985) 4-Amino-4,5- dihydrothiophene-2-carboxlic acid, J. Org. Chem. 50, 2730-2736.
    • (1985) J. Org. Chem , vol.50 , pp. 2730-2736
    • Adams, J.L.1    Chen, T.-M.2    Brain, W.M.3
  • 5
    • 0021157901 scopus 로고
    • Enantiospecific synthesis of (S)-4-amino-4,5-dihydro-2-furancarboxylic acid, a new suicide inhibitor of gaba-transaminase
    • Burkhart, J. P., Holbert, G. W., and Metcalf, B. W. (1984) Enantiospecific synthesis of (S)-4-amino-4,5-dihydro-2-furancarboxylic acid, a new suicide inhibitor of gaba-transaminase, Tetrahedron Lett. 25 (46).
    • (1984) Tetrahedron Lett , vol.25 , Issue.46
    • Burkhart, J.P.1    Holbert, G.W.2    Metcalf, B.W.3
  • 6
    • 0021363707 scopus 로고
    • Biochmecal and clinical effects of gamma-vinyl GABA in patients with epilepsy
    • Schechter, P. J., Hanke, N. F., Grove, J., Huebert, N., and Sjoerdsma, A. (1984) Biochmecal and clinical effects of gamma-vinyl GABA in patients with epilepsy, Neurology 34 (2), 182-186.
    • (1984) Neurology , vol.34 , Issue.2 , pp. 182-186
    • Schechter, P.J.1    Hanke, N.F.2    Grove, J.3    Huebert, N.4    Sjoerdsma, A.5
  • 8
    • 0036307527 scopus 로고    scopus 로고
    • Implications for Altered Glutamate and GABA Metabolism in the Dorsolateral Prefrontal Cortes of Aged Schizophrenic Patients
    • Gluck, M. R., Thomas, R. G., Davis, K. L., and Haroutunian, V. (2002) Implications for Altered Glutamate and GABA Metabolism in the Dorsolateral Prefrontal Cortes of Aged Schizophrenic Patients, Am. J. Psychiatry 159 (7), 1165-1173.
    • (2002) Am. J. Psychiatry , vol.159 , Issue.7 , pp. 1165-1173
    • Gluck, M.R.1    Thomas, R.G.2    Davis, K.L.3    Haroutunian, V.4
  • 9
    • 0024447161 scopus 로고
    • Design of potential anticonvulsant agents: Mechanistic classification of GABA aminotransferase inactivators
    • Nanavati, S. M., and Silverman, R. B. (1989) Design of potential anticonvulsant agents: Mechanistic classification of GABA aminotransferase inactivators, J. Med. Chem. 32 (11), 2413-2421.
    • (1989) J. Med. Chem , vol.32 , Issue.11 , pp. 2413-2421
    • Nanavati, S.M.1    Silverman, R.B.2
  • 10
    • 0017375388 scopus 로고
    • Reaction, of the neurotoxin gabaculine with pyridoxal phosphate
    • Rando, R. R., and Bangerter, F. W. (1977) Reaction, of the neurotoxin gabaculine with pyridoxal phosphate, J. Am. Chem. Soc. 99 (15), 5141-5145.
    • (1977) J. Am. Chem. Soc , vol.99 , Issue.15 , pp. 5141-5145
    • Rando, R.R.1    Bangerter, F.W.2
  • 11
    • 0017653132 scopus 로고
    • Mechanism of the irreversible inhibition of γ-aminobutyric acid-alpha-ketoglutaric acid transaminase by the neurotoxin gabaculine
    • Rando, R. R. (1977) Mechanism of the irreversible inhibition of γ-aminobutyric acid-alpha-ketoglutaric acid transaminase by the neurotoxin gabaculine, Biochemistry 16 (21), 4604-4610.
    • (1977) Biochemistry , vol.16 , Issue.21 , pp. 4604-4610
    • Rando, R.R.1
  • 12
    • 0031571665 scopus 로고    scopus 로고
    • Human ornithine aminotransferase complexed with L-cananline and gabaculine: Structural basis for substrate recognition
    • Shah, S., Shen, B., and Brunger, A. (1997) Human ornithine aminotransferase complexed with L-cananline and gabaculine: structural basis for substrate recognition, Structure 5 (8), 1067-1075.
    • (1997) Structure , vol.5 , Issue.8 , pp. 1067-1075
    • Shah, S.1    Shen, B.2    Brunger, A.3
  • 13
    • 0032542755 scopus 로고    scopus 로고
    • An aromatization mechanism of inactivation of γ-aminobutyric acid aminotransferase for the antibiotic L-cycloserine
    • Olson, G. T., Fu, M., Lau, S., Rinehart, K. L., and Silverman, R. B. (1998) An aromatization mechanism of inactivation of γ-aminobutyric acid aminotransferase for the antibiotic L-cycloserine, J. Am. Chem. Soc. 120, 2256-2267.
    • (1998) J. Am. Chem. Soc , vol.120 , pp. 2256-2267
    • Olson, G.T.1    Fu, M.2    Lau, S.3    Rinehart, K.L.4    Silverman, R.B.5
  • 14
    • 0032542720 scopus 로고    scopus 로고
    • D-Cycloserine inactivation of D-amino acid aminotransferase leads to a stable noncovalent Protein complex with an aromatic cycloserine-PLP derivative
    • Peisach, D., Chipman, D., Van Ophem, P., Manning, J., and Ringe, D. (1998) D-Cycloserine inactivation of D-amino acid aminotransferase leads to a stable noncovalent Protein complex with an aromatic cycloserine-PLP derivative, J. Am. Chem. Soc. 120, 2268-2274.
    • (1998) J. Am. Chem. Soc , vol.120 , pp. 2268-2274
    • Peisach, D.1    Chipman, D.2    Van Ophem, P.3    Manning, J.4    Ringe, D.5
  • 15
    • 0037952855 scopus 로고    scopus 로고
    • A side reaction of Alanine Racemase: Transamination of Cycloserine
    • Fenn, T. D., Stamper, G. F., Morollo, A. A., and Ringe, D. (2003) A side reaction of Alanine Racemase: Transamination of Cycloserine, Biochemistry 42, 5775-5783.
    • (2003) Biochemistry , vol.42 , pp. 5775-5783
    • Fenn, T.D.1    Stamper, G.F.2    Morollo, A.A.3    Ringe, D.4
  • 16
    • 0033198649 scopus 로고    scopus 로고
    • Mechanism of inactivation of γ-aminobutyric acid aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid
    • Fu, M., Nikolic, D., Breemen, R. B. V., and Silverman, R. B. (1999) Mechanism of inactivation of γ-aminobutyric acid aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid, J. Am. Chem. Soc. 121, 7751-7759.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 7751-7759
    • Fu, M.1    Nikolic, D.2    Breemen, R.B.V.3    Silverman, R.B.4
  • 17
    • 0346887166 scopus 로고    scopus 로고
    • Inactivation of γ-aminobutyric acid aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid does not proceed by the expected aromatization mechanism
    • Fu, M., and Silverman, R. B. (2004) Inactivation of γ-aminobutyric acid aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid does not proceed by the expected aromatization mechanism, Bioorg. Med. Chem. Lett. 14, 203-206.
    • (2004) Bioorg. Med. Chem. Lett , vol.14 , pp. 203-206
    • Fu, M.1    Silverman, R.B.2
  • 18
    • 8344248823 scopus 로고    scopus 로고
    • Mechanistic crystallography. Mechanism of inactivation of gamma-aminobutyric acid aminotransferase by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid as elucidated by crystallography
    • Storici, P., Qiu, J., Schirmer, T., and Silverman, R. B. (2004) Mechanistic crystallography. Mechanism of inactivation of gamma-aminobutyric acid aminotransferase by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid as elucidated by crystallography, Biochemistry 43 (44), 14057-14063.
    • (2004) Biochemistry , vol.43 , Issue.44 , pp. 14057-14063
    • Storici, P.1    Qiu, J.2    Schirmer, T.3    Silverman, R.B.4
  • 19
    • 0021843232 scopus 로고
    • Distributions of aspartate aminotransferase and malate dehydrogenase activities in rat retinal layers
    • Ross, C. D., and Godfrey, D. A. (1985) Distributions of aspartate aminotransferase and malate dehydrogenase activities in rat retinal layers, J. Histochem. Cytochem. 33 (7), 624-630.
    • (1985) J. Histochem. Cytochem , vol.33 , Issue.7 , pp. 624-630
    • Ross, C.D.1    Godfrey, D.A.2
  • 20
    • 0028798054 scopus 로고
    • Aspartate aminotransferase and glutamate dehydrogenase activities in the squid giant nerve
    • Garcia, R. A. G., and Villegas, J. (1995) Aspartate aminotransferase and glutamate dehydrogenase activities in the squid giant nerve, J. Neurochem. 64, 437-442.
    • (1995) J. Neurochem , vol.64 , pp. 437-442
    • Garcia, R.A.G.1    Villegas, J.2
  • 21
    • 0034256931 scopus 로고    scopus 로고
    • Differential distribution of the enzymes glutamate dehydrogenase and aspartate aminotransferase in cortical synaptic mitochondria contributes to metabolic compartmentation in cortical synaptic terminals
    • McKenna, M. C., Stevenson, J. H., Huang, X., and Hopkins, I. B. (2000) Differential distribution of the enzymes glutamate dehydrogenase and aspartate aminotransferase in cortical synaptic mitochondria contributes to metabolic compartmentation in cortical synaptic terminals, Neurochem. Int. 37 (2-3), 229-241.
    • (2000) Neurochem. Int , vol.37 , Issue.2-3 , pp. 229-241
    • McKenna, M.C.1    Stevenson, J.H.2    Huang, X.3    Hopkins, I.B.4
  • 22
    • 0034019630 scopus 로고    scopus 로고
    • Compartmentation of brain glutamate metabolism in neurons and glia
    • 4S Suppl, 1026S-1031S
    • Daikhin, Y., and Yudkoff, M. (2000) Compartmentation of brain glutamate metabolism in neurons and glia, J. Nutr. 130 (4S Suppl.), 1026S-1031S.
    • (2000) J. Nutr , pp. 130
    • Daikhin, Y.1    Yudkoff, M.2
  • 23
    • 0032884343 scopus 로고    scopus 로고
    • Glutamate in synaptic terminals is reduced by lack of glucose but not hypoxia in rat hippocampal slices
    • Madl, J. E., and Royer, S. M. (1999) Glutamate in synaptic terminals is reduced by lack of glucose but not hypoxia in rat hippocampal slices, Neuroscience 94 (2), 417-430.
    • (1999) Neuroscience , vol.94 , Issue.2 , pp. 417-430
    • Madl, J.E.1    Royer, S.M.2
  • 24
    • 0018669163 scopus 로고
    • Inhibition of aminotransferase enzyme systems by gabaculine
    • Wood, J., Kurylo, E., and Tsui, D. (1979) Inhibition of aminotransferase enzyme systems by gabaculine, Neurosci. Lett. 14 (2-3), 327-331.
    • (1979) Neurosci. Lett , vol.14 , Issue.2-3 , pp. 327-331
    • Wood, J.1    Kurylo, E.2    Tsui, D.3
  • 25
    • 0005147526 scopus 로고
    • Enzymatic Transamination of Pyridoxamine II. Crystalline Pyridoxamine-Pyruvate Transaminase
    • Wada, H., and Snell, E. E. (1962) Enzymatic Transamination of Pyridoxamine II. Crystalline Pyridoxamine-Pyruvate Transaminase, J. Biol. Chem. 237 (1), 133-137.
    • (1962) J. Biol. Chem , vol.237 , Issue.1 , pp. 133-137
    • Wada, H.1    Snell, E.E.2
  • 26
    • 0002652541 scopus 로고
    • Enzymatic Transamination of Pyridoxamine I. With Oxaloaceate and alpha-ketoglutarate
    • Wada, H., and Snell, E. E. (1962) Enzymatic Transamination of Pyridoxamine I. With Oxaloaceate and alpha-ketoglutarate, J. Biol. Chem. 237 (1), 127-132.
    • (1962) J. Biol. Chem , vol.237 , Issue.1 , pp. 127-132
    • Wada, H.1    Snell, E.E.2
  • 27
    • 0021634693 scopus 로고
    • Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure
    • Kirsch, J. F., Eichele, G., Ford, G. C., Vincent, M. G., Jansonius, J. N., Gehring, H., and Christen, P. (1984) Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure, J. Mol. Biol. 174 (3), 497-525.
    • (1984) J. Mol. Biol , vol.174 , Issue.3 , pp. 497-525
    • Kirsch, J.F.1    Eichele, G.2    Ford, G.C.3    Vincent, M.G.4    Jansonius, J.N.5    Gehring, H.6    Christen, P.7
  • 28
    • 0021107165 scopus 로고
    • pH studies toward the elucidation of the auxiliary catalyst for pig heart aspartate aminotransferase
    • Kiick, D. M., and Cook, P. F. (1983) pH studies toward the elucidation of the auxiliary catalyst for pig heart aspartate aminotransferase, Biochemistry 22, 375-382.
    • (1983) Biochemistry , vol.22 , pp. 375-382
    • Kiick, D.M.1    Cook, P.F.2
  • 29
    • 0024471943 scopus 로고    scopus 로고
    • Smith, D. L., Almo, S. C., Toney, M. D., and Ringe, D. (1989) 2.8 angstrom resolution crystal structure of an active-site mutant of aspartate aminotransferase from Escherichia coli, Biochemistry 28 (20), 8161-8167.
    • Smith, D. L., Almo, S. C., Toney, M. D., and Ringe, D. (1989) 2.8 angstrom resolution crystal structure of an active-site mutant of aspartate aminotransferase from Escherichia coli, Biochemistry 28 (20), 8161-8167.
  • 30
    • 0035756087 scopus 로고    scopus 로고
    • Release of enzyme strain during catalysis reduces the activation energy barrier
    • Kagamiyama, H., and Hayashi, H. (2001) Release of enzyme strain during catalysis reduces the activation energy barrier, Chem. Rec. 1, 385-394.
    • (2001) Chem. Rec , vol.1 , pp. 385-394
    • Kagamiyama, H.1    Hayashi, H.2
  • 31
    • 20444372699 scopus 로고    scopus 로고
    • Binding of C5-dicarboxylic substrate to aspartate aminotransferase: Implications for the conformational change at the transaldimination step
    • Islam, M. M., Goto, M., Miyahara, I., Ikushiro, H., Hirotsu, K., and Hayashi, H. (2005) Binding of C5-dicarboxylic substrate to aspartate aminotransferase: Implications for the conformational change at the transaldimination step, Biochemistry 44, 8218-8229.
    • (2005) Biochemistry , vol.44 , pp. 8218-8229
    • Islam, M.M.1    Goto, M.2    Miyahara, I.3    Ikushiro, H.4    Hirotsu, K.5    Hayashi, H.6
  • 32
    • 0029079958 scopus 로고
    • Redesign of the substrate specificity of Escherichia coli aspartate aminotransferase to that of Escherichia coli tyrosine aminotransferase by homology modeling and site-directed mutagenesis
    • Onuffer, J. J., and Kirsch, J. f. (1995) Redesign of the substrate specificity of Escherichia coli aspartate aminotransferase to that of Escherichia coli tyrosine aminotransferase by homology modeling and site-directed mutagenesis, Protein Sci. 4, 1750-1757.
    • (1995) Protein Sci , vol.4 , pp. 1750-1757
    • Onuffer, J.J.1    Kirsch, J.F.2
  • 33
    • 0000955589 scopus 로고
    • Serum Glutamic Oxalacetic Transaminase Activity
    • Amador, E., and Wacker, W. (1962) Serum Glutamic Oxalacetic Transaminase Activity, Clin. Chem. 8, 343.
    • (1962) Clin. Chem , vol.8 , pp. 343
    • Amador, E.1    Wacker, W.2
  • 35
    • 0028028030 scopus 로고
    • X-ray crystallographic study of pyridoxamine 5′-phosphate-type aspartate aminotransferases from Escherichia coli in three forms
    • Miyahara, I., Hirotsu, K., Hayashi, H., and Kagamiyama, H. (1994) X-ray crystallographic study of pyridoxamine 5′-phosphate-type aspartate aminotransferases from Escherichia coli in three forms, J. Biochem. 116 (5), 1001-1012.
    • (1994) J. Biochem , vol.116 , Issue.5 , pp. 1001-1012
    • Miyahara, I.1    Hirotsu, K.2    Hayashi, H.3    Kagamiyama, H.4
  • 37
  • 38
    • 0035182073 scopus 로고    scopus 로고
    • Use of TLS parameters to model anisotropic displacements in marcromolecular refinement
    • Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in marcromolecular refinement, Acta Crystallogr., Sect. D: Biol. Crystallogr. 57 (1), 122-133.
    • (2001) Acta Crystallogr., Sect. D: Biol. Crystallogr , vol.57 , Issue.1 , pp. 122-133
    • Winn, M.D.1    Isupov, M.N.2    Murshudov, G.N.3
  • 40
    • 0027504350 scopus 로고
    • Functional Roles of Valine 37 and Glycine 38 in the Mobile Loop of Porcine Cytosolic Aspartate Aminotransferase
    • Pan, Q.-W., Tanase, S., Fukumoto, Y., Nagashima, F., Rhee, S., Rogers, P. H., Argnone, A., and Morino, Y. (1993) Functional Roles of Valine 37 and Glycine 38 in the Mobile Loop of Porcine Cytosolic Aspartate Aminotransferase, J. Biol. Chem. 268 (33), 24758-24765.
    • (1993) J. Biol. Chem , vol.268 , Issue.33 , pp. 24758-24765
    • Pan, Q.-W.1    Tanase, S.2    Fukumoto, Y.3    Nagashima, F.4    Rhee, S.5    Rogers, P.H.6    Argnone, A.7    Morino, Y.8
  • 41
    • 0028174289 scopus 로고
    • Crystal structures of Escherichia coli aspartate aminotransferase in two conformations
    • Jager, J., Moser, M., Sauder, U., and Jansonius, J. N. (1994) Crystal structures of Escherichia coli aspartate aminotransferase in two conformations, J. Mol. Biol. 239, 285-305.
    • (1994) J. Mol. Biol , vol.239 , pp. 285-305
    • Jager, J.1    Moser, M.2    Sauder, U.3    Jansonius, J.N.4
  • 42
    • 0034098693 scopus 로고    scopus 로고
    • The role of residues outside the active site: Structural basis for function of C191 mutants of Escherichia coli aspartate aminotransferase
    • Jeffery, C. J., Gloss, L. M., Petsko, G. A., and Ringe, D. (2000) The role of residues outside the active site: structural basis for function of C191 mutants of Escherichia coli aspartate aminotransferase, Protein Eng. 13 (2), 105-112.
    • (2000) Protein Eng , vol.13 , Issue.2 , pp. 105-112
    • Jeffery, C.J.1    Gloss, L.M.2    Petsko, G.A.3    Ringe, D.4
  • 43
    • 0028069453 scopus 로고
    • The structural basis for the altered substrate specificity of the R292D active site mutant of aspartate aminotransferase from E. coli
    • Almo, S. C., Smith, D. L., Danishefsky, A. T., and Ringe, D. (1994) The structural basis for the altered substrate specificity of the R292D active site mutant of aspartate aminotransferase from E. coli, Protein Eng. 7 (3), 405-412.
    • (1994) Protein Eng , vol.7 , Issue.3 , pp. 405-412
    • Almo, S.C.1    Smith, D.L.2    Danishefsky, A.T.3    Ringe, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.