Analysis of the PB2 gene reveals that Indian H5N1 influenza virus belongs to a mixed-migratory bird sub-lineage possessing the amino acid lysine at position 627 of the PB2 protein

Archives of Virology

Volumn 152, Issue 9, 2007, Pages 1637-1644

  Kamal, R P ^a   Tosh, C ^a   Pattnaik, B ^a   Behera, P ^a   Nagarajan, S ^a   Gounalan, S ^a   Shrivastava, N ^a   Shankar, B P ^a   Pradhan, H K ^a  

^a ICAR National Institute of High Security Animal Diseases   (India)

Author keywords

[No Author keywords available]

Indexed keywords

LYSINE; PB2 PROTEIN, INFLUENZA VIRUS; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ANIMAL; ARTICLE; AVIAN INFLUENZA; BIRD; CELL LINE; CERCOPITHECUS; CHEMISTRY; CLASSIFICATION; GENETIC DATABASE; GENETICS; INDIA; INFLUENZA VIRUS A H5N1; METABOLISM; PATHOGENICITY; PHYLOGENY; VERO CELL; VIROLOGY;

ANIMALS; BIRDS; CELL LINE; CERCOPITHECUS AETHIOPS; DATABASES, GENETIC; INDIA; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; LYSINE; PHYLOGENY; VERO CELLS; VIRAL PROTEINS;

ANATIDAE; AVES; MAMMALIA; ORTHOMYXOVIRIDAE;

EID: 34548294796     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-007-1002-5     Document Type: Article

References (22)

1. ECJ Claas ADME Osterhaus R Van Beek JC De Jong GF Rimmelzwaan DA Senne S Krauss KF Shortridge RG Webster 1998 Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus Lancet 351 472 477
2. H Chen Y Li Z Li J Shi K Shinya G Deng Q Qi G Tian S Fan H Zhao Y Sun Y Kawaoka 2006 Properties and dissemination of H5N1 viruses isolated during an influenza outbreak in migratory waterfowl in western China J Virol 80 5976 5983
3. H Chen GJD Smith KS Li J Wang XH Fan JM Rayner D Vijaykrishna JX Zhang LJ Zhang CT Guo CL Cheung KM Xu L Duan K Huang K Qin YHC Leung WL Wu HR Lu Y Chen NS Xia TSP Naipospos KY Yuen SS Hassan S Bahri TD Nguyen RG Webster JSM Peiris Y Guan 2006 Establishment of multiple sublineages of H5N1 influenza virus in Asia: implications for pandemic control Proc Natl Acad Sci (USA) 103 2845 2850
4. Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
5. E Fodor M Crow LJ Mingay T Deng J Sharps P Fechter GG Brownlee 2002 A single amino acid mutation in the PA subunit of the influenza virus RNA polymerase inhibits endonucleolytic cleavage of capped RNAs J Virol 76 8989 9001
6. RAM Fouchier V Munster A Wallensten TM Bestebroer S Herfst D Smith GF Rimmelzwaan B Olsen ADME Osterhaus 2004 Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls J Virol 79 2814 2822
7. G Gabriel B Dauber T Wolff O Planz HD Klenk J Stech 2005 The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host Proc Natl Acad Sci (USA) 102 18590 18595
8. M Hatta P Gao P Halfmann Y Kawaoka 2001 Molecular basis for high virulence of Hong Kong H5N1 influenza viruses Science 293 1840 1842
9. E Hoffmann J Stech Y Guan RG Webster DR Perez 2001 Universal primer set for the full-length amplification of all influenza A viruses Arch Virol 146 2275 2289
10. RA Lamb RM Krug 2001 Orthomyxoviridae: the viruses and their replication DM Knipe PM Howel Fields virology 4 Lippincott Williams & Wilkins Philadelphia 1487 1532
11. JH Lu XF Liu WX Shao YL Liu DP Wei HQ Liu 2005 Phylogenetic analysis of eight genes of H9N2 subtype influenza virus: a Mainland China strain possessing early isolates' genes that have been circulating Virus Genes 31 163 169
12. RDM Page 1996 TREEVIEW: an application to display phylogenetic trees on personal computers Comput Appl Biosci 12 357 358
13. B Pattnaik AK Pateriya R Khandia C Tosh S Nagarajan S Gounalan HV Murugkar BP Shankar N Shrivastava P Behera S Bhagat JSM Peiris HK Pradhan 2006 Phylogenetic analysis revealed genetic similarity of the H5N1 avian influenza viruses isolated from HPAI outbreaks in chickens in Maharashtra, India with those isolated from swan in Italy and Iran in 2006 Curr Sci 91 77 81
14. P Puthavathana P Auewarakul PC Charoenying K Sangsiriwut P Pooruk K Boonnak R Khanyok P Thawachsupa R Kijphati P Sawanpanyalert 2005 Molecular characterization of the complete genome of human influenza H5N1 virus isolates from Thailand J Gen Virol 86 423 433
15. K Shinya S Hamm M Hatta H Ito T Ito Y Kawaoka 2004 PB2 amino acid at position 627 affects replicative efficiency, but not cell tropism, of Hong Kong H5N1 influenza A viruses in mice Virology 15 258 266
16. KF Shortridge CH Stuart-Harris 1982 An influenza epicentre? Lancet 2 812 813
17. EK Subbarao W London BR Murphy 1993 A single amino acid in the PB2 gene of influenza A virus is a determinant of host range J Virol 67 1761 1764
18. K Subbarao A Klimov J Katz H Regnery W Lim H Hall M Perdue D Swayne C Bender J Huang M Hemphill T Rowe M Shaw X Xu K Fukuda N Cox 1998 Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness Science 279 393 396
19. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
20. World Health Organization 1980 A revision of the system of nomenclature for influenza viruses: a WHO memorandum Bull WHO 58 585 591
21. X Xu K Subbarao NJ Cox Y Guo 1999 Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong Virology 15 15 19
22. JY Zhou HG Shen HX Chen GZ Tong M Liao HC Yang JX Liu 2006 Characterization of a highly pathogenic H5N1 influenza virus derived from bar-headed geese in China J Gen Virol 87 1823 1833