Even distribution of BK polyomavirus subtypes and subgroups in the Japanese Archipelago

Archives of Virology

Volumn 152, Issue 9, 2007, Pages 1613-1621

  Zhong, S ^a   Yogo, Y ^a   Ogawa, Y ^b   Oshiro, Y ^b   Fujimoto, K ^c   Kunitake, T ^d   Zheng, H Y ^a   Shibuya, A ^a   Kitamura, T ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF THE RYUKYUS   (Japan)

^c NARA MEDICAL UNIVERSITY   (Japan)

^d Muta Hospital   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ARTICLE; BK VIRUS; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; GEOGRAPHY; HUMAN; JAPAN; PHYLOGENY; URINE; VIROLOGY; VIRUS INFECTION;

BK VIRUS; DNA, VIRAL; GEOGRAPHY; HUMANS; JAPAN; PHYLOGENY; POLYOMAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; TUMOR VIRUS INFECTIONS; URINE;

BK POLYOMAVIRUS; POLYOMAVIRUS;

EID: 34548268619     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-007-0997-y     Document Type: Article

References (22)

1. P Cantalupo A Doering CS Sullivan A Pal KW Peden AM Lewis JM Pipas 2005 Complete nucleotide sequence of polyomavirus SA12 J Virol 79 13094 13104
2. Q Chen HY Zheng S Zhong H Ikegaya HX He W Wei YY He N Kobayashi T Honjo T Takasaka S Takahashi T Kitamura Y Yogo 2006 Subtype IV of the BK polyomavirus is prevalent in East Asia Arch Virol 151 2419 2429
3. Y Dodo H Ishida 1990 Population history of Japan as viewed from cranial nonmetric variation Anthropol Sci 98 269 287
4. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
5. K Hanihara 1991 Dual structure model for the population history of the Japanese Jpn Rev 2 1 33
6. HH Hirsch J Steiger 2003 Polyomavirus BK Lancet Infect Dis 3 611 623
7. L Jin PE Gibson JC Booth JP Clewley 1993 Genomic typing of BK virus in clinical specimens by direct sequencing of polymerase chain reaction products J Med Virol 41 11 17
8. M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Mol Evol 16 111 120
9. T Kitamura Y Aso N Kuniyoshi K Hara Y Yogo 1990 High incidence of urinary JC virus excretion in nonimmunosuppressed older patients J Infect Dis 161 1128 1133
10. T Kitamura C Sugimoto H Ebihara A Kato J Guo F Taguchi T Tominaga Y Ogawa N Ohta N Kizu K Imamura H Funaki T Kurosawa S Ichikawa T Suzuki K Chiba K Nagashima S Yasumoto Y Yogo 1998 Peopling of Japan as revealed by genotyping of urinary JC virus DNA Anthropol Sci 106 311 325
11. WA Knowles 2001 The epidemiology of BK virus and the occurrence of antigenic and genomic subtypes K Khalili GL Stoner Human polyomaviruses: molecular and clinical perspectives Wiley Chichester 527 559
12. Y Nishimoto T Takasaka M Hasegawa HY Zheng Q Chen C Sugimoto T Kitamura Y Yogo 2006 Evolution of BK virus based on complete genome data J Mol Evol 63 341 352
13. Nishimoto Y, Zheng HY, Shan Zhong S, Ikegaya H, Chen Q, Sugimoto C, Kitamura T, Yogo Y (2007) An Asian origin for subtype IV BK virus based on phylogenetic analysis. J Mol Evol (in press)
14. G Perriere M Gouy 1996 www.Query: An on-line retrieval system for biological sequence banks Biochimie 78 364 369
15. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
16. I Seif G Khoury R Dhar 1979 The genome of human papovavirus BKV Cell 18 963 977
17. JE Tavis DL Walker SD Gardner RJ Frisque 1989 Nucleotide sequence of the human polyomavirus AS virus, an antigenic variant of BK virus J Virol 63 901 911
18. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
19. T Yogo T Kitamura C Sugimoto 2003 Origin of modern Japanese as viewed from JC virus Sci Hum Bensei 42 60 73 Japanese
20. Y Yogo C Sugimoto HY Zheng H Ikegaya T Takasaka T Kitamura 2004 JC virus genotyping offers a new paradigm in the study of human populations Rev Med Virol 14 179 191
21. HY Zheng Y Nishimoto Q Chen M Hasegawa S Zhong H Ikegaya N Ohno C Sugimoto T Takasaka T Kitamura Y Yogo 2007 Relationships between BK virus lineages and human populations Microb Infect 9 204 213
22. S Zhong HY Zheng Q Chen H Ikegaya M Suzuki N Aoki S Usuku N Kobayashi S Nukuzuma Y Yasuda N Kuniyoshi Y Yogo T Kitamura 2007 Age-related urinary excretion of BK polyomavirus by non-immunocompromised individuals J Clin Microbiol 45 193 198