Identification of pTi-SAKURA DNA region conferring enhancement of plasmid incompatibility and stability

Genes and Genetic Systems

Volumn 82, Issue 3, 2007, Pages 197-206

  Yamamoto, Shinji ^a   Uraji, Misugi ^a   Tanaka, Katsuyuki ^a   Moriguchi, Kazuki ^a   Suzuki, Katsunori ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

Agrobacterium; Incompatibility; Stability; Ti plasmid

Indexed keywords

DNA FRAGMENT;

ARTICLE; BACTERIAL STRAIN; CONTROLLED STUDY; DNA DETERMINATION; FRAMESHIFT MUTATION; GENETIC INCOMPATIBILITY; GENETIC STABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; RECOMBINANT PLASMID; RHIZOBIUM RADIOBACTER;

DNA, BACTERIAL; PLANT TUMOR-INDUCING PLASMIDS; RHIZOBIUM RADIOBACTER; SEQUENCE HOMOLOGY, NUCLEIC ACID;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; BACTERIA (MICROORGANISMS);

EID: 34548220949     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.82.197     Document Type: Article

References (32)

1. Austin, S. J., and Nordström, K. (1990) Partition-mediated incompatibility of bacterial plasmids. Cell 60, 351-354.
2. Bevan, M. (1984) Binary Agrobacterium vectors for plant transformation. Nucleic Acids Res. 12, 8711-8721.
3. Chilton, M. D., Currier, T. C., Farrand, S. K., Bendich, A. J., Gordon, M. P., and Nester, E. W. (1974) Agrobacterium tumefaciens DNA and PS8 bacteriophage DNA not detected in crown gall tumors. Proc. Natl. Acad. Sci. USA 71, 3672-3676.
4. De Costa, D. M., Suzuki, K., Sato, M., and Yoshida, K. (2001) Genome analysis of Agrobacterium tumefaciens: linkage map and genetic features of the left region of the linear chromosome. Genes Genet. Syst. 76, 363-371.
5. Fellay, R., Frey, J., and Krisch, H. (1987) Interposon mutagenesis of soil and water bacteria: a family of DNA fragments designed for in vitro insertional mutagenesis of gram-negative bacteria. Gene 52, 147-154.
6. Galibert, F., Finan, T. M., Long, S. R., Pühler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M. J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R. W., Dréano, S., Federspiel, N. A., Fisher, R. F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, J., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R. W., Jones, T., Kahn, D., Kahn, M. L., Kalman, S., Keating, D. H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M. C., Pohl, T. M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thebault, P., Vandenbol, M., Vorhölter, F. J., Weidner, S., Wells, D. H., Wong, K., Yeh, K. C., and Batut, J. (2001) The composite genome of the legume symbiont Sinorhizobium melilot. Science 293, 668-672.
7. Goodner, B., Hinkle, G., Gattung, S., Miller, N., Blanchard, M., Qurollo, B., Goldman, B. S., Cao, Y., Askenazi, M., Halling, C., Mullin, L., Houmiel, K., Gordon, J., Vaudin, M., Iartchouk, O., Epp, A., Liu, F., Wollam, C., Allinger, M., Doughty, D., Scott, C., Lappas, C., Markelz, B., Flanagan, C., Crowell, C., Gurson, J., Lomo, C., Sear, C., Strub, G., Cielo, C., and Slater, S. (2001) Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. Science 294, 2323-2328.
8. Hanekamp, T., Kobayashi, D., Hayes, S., and Stayton, M. M. (1997) Avirulence gene D of Pseudomonas syringae pv. tomato may have undergone horizontal gene transfer. FEBS Lett. 415, 40-44.
9. Hattori, Y., Uraji, M., Suzuki, K., Ohta, N., Iwata, K., Kato, A., and Yoshida, K. (2000) Gene list on a plant tumor-inducing plasmid, pTi-SAKURA in Agrobacterium tumefaciens MAFF301001. DNA Res. 7, 371-380.
10. Holsters, M., Hernalsteens, J. P., Van Montagu, M., and Schell, J. (1982) Ti plasmids of Agrobacterium tumefaciens: The nature of the TIP. In: Molecular Biology of Plant tumors (eds.: G. kahl, and J. S. Schell), pp. 269-298. Academic Press, New York.
11. Li, P., and Farrand, S. K. (2000) The replicator of the nopaline-type Ti plasmid pTiC58 is a member of repABC family and is influenced by the TraR-dependent quorum-sensing regulatory system. J. Bacteriol. 182, 179-188.
12. Miller, V. L., and Mekalanos, J. J. (1988) A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol. 170, 2575-2583.
13. Moriguchi, K., Maeda, Y., Satou, M., Hardayani, N. S., Kataoka, M., Tanaka, N., and Yoshida, K. (2001) The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in Rhizobiaceae. J. Mol. Biol. 307, 771-784.
14. Nishiguchi, R., Takanami, M., and Oka, A. (1987) Characterization and sequence determination of the replicator region in the hairy-root-inducing plasmid pRiA4b. Mol. Gen. Genet. 206, 1-8.
15. Novick, R. P. (1987) Plasmid incompatibility. Microbiol. Rev. 51, 381-395.
16. Parales, R. E., and Harwood, C. S. (1993) Construction and use of a new broad-host-range lacZ transcriptional fusion vector, pHRP309, for gram- bacteria. Gene 133, 23-30.
17. Penfold, R. J., and Pemberton, J. M. (1992) An improved suicide vector for construction of chromosomal insertion mutations in bacteria. Gene 118, 145-146.
18. Ramírez-Romero, M. A., Soberón, N., Pérez-Oseguera, A., Téllez-Sosa, J., and Cevallos, M.A. (2000) Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid. J. Bacteriol. 182, 3117-3124.
19. Rigottier-Gois, L., Tumer, S. L., Young, J. P. W., and Amarger, N. (1998) Distribution of repC plasmid-replication sequences among plasmids and isolates of Rhizobium leguminosarum bv. viciae from field populations. Microbiology 144, 771-780.
20. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular cloning: A Laboratory Manual, 2nd Edition. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
21. Schäfer, A., Tauch, A., Jäger, W., Kalinowski, J., Thierbach, G., and Pühler, A. (1994) Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145, 69-73.
22. Simon, R., Priefer, U., and Pühler, A. (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram-negative bacteria. Bio/Technology 1, 784-794.
23. Suzuki, K., Hattori, Y., Uraji, M., Ohta, N., Iwata, K., Murata, K., Kato, A., and Yoshida, K. (2000) Complete nucleotide sequence of a plant tumor-inducing Ti plasmid. Gene 242, 331-336.
24. Suzuki, K., Ichikawa, K., and Jigami, Y. (1989) Yeast mutants with enhanced ability to secrete human lysozyme: isolation and identification of a protease-deficient mutant. Mol. Gen. Genet. 219, 58-64.
25. Suzuki, K., Iwata, K., and Yoshida, K. (2001) Genome analysis of Agrobacterium tumefaciens: construction of physical maps for linear and circular chromosomal DNAs, determination of copy number ratio and mapping of chromosomal virulence genes. DNA Res. 8, 141-152.
26. Suzuki, K., Ohta, N., Hattori, Y., Uraji, M., Kato, A., and Yoshida, K. (1998) Novel structural difference between nopaline- and octopine-type trbJ genes: construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA. Biochim. Biophys. Acta 1396, 1-7.
27. Tabata, S., Hooykaas, P. J. J., and Oka, A. (1989) Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3. J. Bacteriol. 171, 1665-1672.
28. Uraji, M., Suzuki, K., and Yoshida, K. (2002) A novel plasmid curing method using incompatibility of plant pathogenic Ti plasmids in Agrobacterium tumefaciens. Genes Genet. Syst. 77, 1-9.
29. White, F. F., and Nester, E. W. (1980) Relationship of plasmids responsible for hairy root and crown gall tumorigenicity. J. Bacteriol. 144, 710-720.
30. Wise, A. A., Liu, Z., and Binns, A. N. (2006) Three methods for the introduction of foreign DNA into Agrobacterium. In: Agrobacterium Protocols second edition (eds.: Wang. K), pp. 43-53. Humana Press, New Jersey, USA.
31. Zakian, V. A., Blanton, H. M., Wetzel, L., and Dani, G. M. (1986) Size threshold for Saccharomyces cerevisiae chromosomes: generation of telocentric chromosomes form an unstable minichromosome. Mol. Cell. Biol. 6, 925-932.
32. Zhang, Y. X., Li, J., Guo, X. K., Wu, C., Bi, B., Ren, S. X., Wu, C. F., and Zhao, G. P. (2004) Characterization of a novel toxin-antitoxin module, VapBC, encoded by Leptospira interrogans chromosome. Cell Res. 14, 208-216.