Complete nucleotide sequence of a plant tumor-inducing Ti plasmid

Gene

Volumn 242, Issue 1-2, 2000, Pages 331-336

  Suzuki, Katsunori ^a   Hattori, Yoshiyuki ^a   Uraji, Misugi ^a   Ohta, Nobuyuki ^a   Iwata, Kumi ^a   Murata, Kenji ^a   Kato, Akira ^b   Yoshida, Kazuo ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

^b Hokkaido Agric Experiment Station   (Japan)

Author keywords

Agrobacteria; Agrobacterium tumefaciens; Crown gall tumor disease; Horizontal gene transfer; Pathogenesis; Plant microbial interaction

Indexed keywords

AGRICULTURE; ARTICLE; CARCINOGENESIS; DNA SEQUENCE; GENE CLUSTER; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PLANT GROWTH; PLASMID; PRIORITY JOURNAL; RHIZOBIUM;

CHROMOSOME MAPPING; DNA, BACTERIAL; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLANT TUMORS; PLASMIDS; RHIZOBIUM RADIOBACTER; SEQUENCE ANALYSIS, DNA;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; PROKARYOTA; RHIZOBIUM; SPHINGOMONAS;

EID: 0033956183     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00502-8     Document Type: Article

References (28)

1. Binns A.N., Thomashow M.F. Cell biology of Agrobacterium infection and transformation of plants. Annu. Rev. Microbiol. 42:1988;575-606.
2. Borodovsky M., McIninch J. GeneMark: parallel gene recognition for both DNA strands. Comp. Chem. 17:1993;123-133.
3. Bundock P., den Dulk-Ras A., Beijersbergen A., Hooykaas P.J.J. Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. EMBO J. 14:1995;3206-3214.
4. De Cleene M., De Lay J. The host range of crown-gall. Bot. Rev. 42:1976;389-466.
5. Dessaux Y., Petit A., Tempe J. Opines in Agrobacterium biology. Verma D.P.S. Molecular Signals in Plant-Microbe Interactions. 1992;109-136 CRC Press, Boca Raton, FL.
6. Dums F., Dow J.M., Daniels M.J. Structural characterization of protein secretion genes of the bacterial phytopathogen Xanthomonas campestris pathovar campestris. Relatedness to secretion systems of other Gram-negative bacteria. Mol. Gen. Genet. 229:1991;357-364.
7. Freiberg C., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Molecular basis of symbiosis between Rhizobium and legumes. Nature. 387:1997;394-401.
8. Hattori Y., Suzuki K., Ohta N., Uraji M., Katoh A., Yoshida K. Genome structure of pTi-SAKURA (I): Strategy for DNA sequencing of a Japanese cherry-Ti plasmid. Nucleic. Acids Symp. Ser. 37:1997;159-160.
9. Heinemann J.A. Genetics of gene transfer between species. Trends Genet. 7:1991;181-185.
10. Heinemann J.A., Sprague G.F.J. Bacterial conjugative plasmids mobile DNA transfer between bacteria and yeast. Nature. 340:1989;205-209.
11. Holsters M., Silva B., Van Vliet F., Genetello C., De Block M., Dhaese P., Depicker A., Inze D., Engler G., Villarroel R., Van Montagu M., Schell J. The functional organization of the nopaline A. tumefaciens plasmid pTiC58. Plasmid. 3:1980;212-230.
12. Hooykaas P.J.J., Beijersbergen A.G.M. The virulence system of Agrobacterium tumefaciens. Annu. Rev. Phytopathol. 32:1994;157-179.
13. Kado C.I. Agrobacterium-mediated transfer and stable incorporation of foreign genes in plants. Clewell D.B. Bacterial Conjugation. 1993;243-254 Plenum, New York.
14. Kersters K., De Ley J. Genus III Agrobacterium Conn 1942 359. Krieg N.R., Holt J.G. Bergey's Manual of Systematic Bacteriology. vol. 1:1984;244-254 William and Wilkins, Baltimore.
15. Maki H., Sekiguchi M. MutT protein specifically hydrolyses a potent mutagenic substrate for DNA systhesis. Nature. 355:1992;273-275.
16. Masai E., Katayama Y., Kawai S., Nishikawa S., Yamasaki M., Morohoshi N. Cloning and sequencing of the gene for a Psuedomonas paucimobilis enzyme that cleaves β-aryl ether. J. Bacteriol. 173:1991;7950-7955.
17. Nishikawa M., Suzuki K., Yoshida K. Structural and functional stability of IncP plasmids during stepwise transmission by trans-kingdom mating: promiscuous conjugation of Escherichia coli and Saccharomyces cerevisiae. Jpn. J. Genet. 65:1990;323-334.
18. Nishikawa M., Suzuki K., Yoshida K. DNA integration into recipient yeast chromosomes by trans-kingdom conjugation between Escherichia coli and Saccharomyces cerevisiae. Curr. Genet. 21:1992;101-108.
19. Pearlson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
20. Pies K.L., Heath J.D., Liang X., Stephens K., Nester E.W. Agrobacterium tumefaciens-mediated transformation of yeast. Proc. Natl. Acad. Sci. USA. 93:1996;1613-1618.
21. Rostas K., Kondorosi E., Horvath B., Simoncsits A., Kondorosi A. Conservation of extended promoter regions of nodulation genes in Rhizobium. Proc. Natl. Acad. Sci. USA. 83:1986;1757-1761.
22. Salomone J.-Y., Crouzet P., De Ruffray P., Otten L. Characterization and distribution of tartrate utilization genes in the grapevine pathogen Agrobacterium vitis. Mol. Plant-Microbe Interact. 9:1996;401-408.
23. Sandkvist M., Morales V., Bagdasarian M. A protein required for secretion of cholera toxin through the outer membrane of Vibrio cholerae. Gene. 123:1993;81-86.
24. Sawada H., Ieki H., Kobayashi S., Oiyama I. Grouping of tumorigenic Agrobacterium spp. based on Ti plasmid-related phenotypes. (in Japanese) Ann. Phytopathol. Soc. Jpn. 58:1992;244-252.
25. Sawasaki Y., Inomata K., Yoshida K. Trans-kingdom conjugation between Agrobacterium tumefaciens and Saccharomyces cerevisiae, a bacterium and a yeast. Plant Cell Physiol. 37:1996;103-106.
26. Schwedock J., Long S.R. ATP sulphurylase activity of the nodP and nodQ gene products of Rhozobium meliloti. Nature. 348:1990;644-647.
27. Suzuki K., Ohta N., Hattori Y., Uraji M., Katoh A., Yoshida K. Novel structural difference between nopaline- and octopine- type trbJ gene: construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA. Biochim. Biophys. Acta. 1396:1998;1-7.
28. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.