Genetic diversity in Hordeum spontaneum C. Koch of northern Jordan (Ajloun Area) as revealed by RAPD and AFLP markers

International Journal of Botany

Volumn 3, Issue 2, 2007, Pages 172-178

  Al Saghir, M G ^a   Malkawi, H I ^b   El Oqlah, A ^b  

^a OHIO UNIVERSITY   (United States)

^b YARMOUK UNIVERSITY   (Jordan)

Author keywords

AFLP; Genetic diversity; Hordeum spontaneum; RAPD

Indexed keywords

HORDEUM; HORDEUM VULGARE SUBSP. SPONTANEUM;

EID: 34548186929     PISSN: 18119700     EISSN: 18119719     Source Type: Journal    
DOI: 10.3923/ijb.2007.172.178     Document Type: Article

References (31)

1. Breyne, P., D. Rombaut, A. Van Gysel, M. Van Montagu and T. Gerats, 1999. AFLP analysis of genetic diversity within and between Arabidopsis thaliana ecotypes. Mol. Gen. Genet., 261: 627-634.
2. Chalmers, K.J., R. Waugh, J. Waters, B.P. Forster, E. Nevo, R.J. Abbott and W. Powell, 1992. Grain isozyme and ribosomal DNA variability in Hordeum spontaneum populations from Israel. Theor. Applied Genet., 84: 313-322.
3. Dawson, I.K., K.J. Chalmer, R. Waugh and W. Powell, 1993. Detection and analysis of genetic variation in Hordeum spontaneum populations from Israel using RAPD markers. Mol. Ecol., 2: 151-159.
4. Doyle, J.J. and J.L. Doyle, 1990. Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
5. Hayes, P.M., A. Castro, L. Marquez-Cedillo, A. Corey, C. Henson, B. Jones, J. Kling, D. Mather, I. Matus, C. Rossi and K. Sato, 2002. Genetic Diversity for Quantitatively Inherited Agronomic and Malting Quality Traits. In: Diversity Barley. Von Bothmer, R., H. Knupfeer, T. van Hintum and K. Sato (Eds.), Elsevier Science Publishers, Amsterdam, Netherlands.
6. Lanner-Herrera, C., M. Gustagsson, A.S. Falt and T. Bryngelsson, 1996. Diversity in natural populations of wild Brassica olereacea as estimated by isozyme and RAPD analysis. Genet. Res. Crop Evol., 43: 13-23.
7. Mantel, N., 1967. The detection of disease clustering and a generalized regression approach. Cancer Res., 27: 209-220.
8. Matus, I.A. and P.M. Hayes, 2002. Genetic diversity in three groups of barley germplasm assessed by simple sequence repeats. Genome, 45: 1095-1106.
9. Morrell, P.L., K.E. Lundy and M.T. Clegg, 2003. Distinct geographic patterns of genetic diversity are maintained in wild barley (Hordeum vulgare ssp. spontaneum) despite migration. Proc. Natl. Acad. Sci. USA., 100: 10812-10817.
10. Nevo, E., 1992. Origin, Evolution, Population Genetics and Resources of Wild Barley, Hordeum spontaneum, in the Fertile Crescent. In: Barley. Genetics, Biochemistry, Molecular Biology and Biotechnology. Shewry, P.A. (Ed.), CAB International, Wallingford, UK., pp: 19-43.
11. Nevo, E., 1998a. Molecular evolution and ecological stress at global, regional and local scales: The Israeli perspective. J. Exp. Zool., 282: 95-119.
12. Nevo, E., 1998b. Genetic diversity of wild cereals: Regional and local studies and their bearing on conservation ex situ and in situ. Genet. Res. Crop Evol., 45: 355-370.
13. Owuor, E.D., T. Fahima, A. Beharav, A. Korol and E. Nevo, 1999. RAPD divergence caused by microsite edaphic selection in wild barley. Genetica, 105: 177-192.
14. Pakniyat, H., W. Powell, E. Baird, L. Handley, D. Robinson, C.M. Scrimgeour, E. Nevo, C.A. Hackett, P.D.S. Caligari and B.P. Forster, 1997. AFLP variation in wild barley (Hordeum spontaneum C Koch) with reference to saltolerance and associated ecogeography. Genome, 40: 332-341.
15. Rohlf, F.J., 1993. Numerical taxonomy and multivariate analysis system NTSys-PC version 1.80 Exeter Software, New York.
16. Russell, J.R. Fuller, J.D. Macaulay, M. Hatz, B.G. Jahoor, A. Powell and W. Waugh, 1997. Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor. Applied Genet., 86: 975-984.
17. Saghai-Maroof, M.A., W. Allard and Q. Zhang, 1990. Genetic diversity and ecogeographic differentiation among ribosomal DNA alleles in wild and cultivated barley. Proc. Natl. Acad. Sci. USA., 87: 8486-8490.
18. Saghai-Maroof, M.A., R.M. Biyashev, G.P. Yang, Q. Zhang and W. Allard, 1994. Extraordinarily polymorphic micro satellite DNA in barley: Species diversity, chromosomal locations and population dynamics. Proc. Natl. Acad. Sci. USA., 91: 5466-5470.
19. Saghai-Maroof, M.A., Q. Zhang and R. Biyashev, 1995. Comparison of restriction fragment length polymorphisms in wild and cultivated barley. Genome, 38: 298-306.
20. Sun, G.L., B. Salomon and R. von Bothmer, 1997. Analysis of teraploid Elymus species using wheat microsatellite markers and RAPD markers. Genome, 40: 806-881.
21. Thormann, C.E., M.E. Ferreira, L.E. Camago, J.G. Tivage and T.C. Obsborn, 1994. Comparsion of RFLP and RAPD markers to estimating genetic relationships within among Cruiferous species. Theor. Applied Genet., 88: 973-980.
22. Turpeinen, T., T. Tenhola, O. Manninen, E. Nevo and E. Nissilä, 2001. Microsatellite diversity associated with ecological factors in Hordeum spontaneum populations in Israel. Mol. Ecol., 10: 1577-1592.
23. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. Van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper and M. Zabeau, 1995. AFLP: A new technique for DNA fingerprinting. Nucl. Acids Res., 23: 4407-4414.
24. Warburton, M.L. and F.A. Bliss, 1996. Genetic diversity in Peach (Prunus persica L. Batch) revealed by randomly amplified polymorphic DNA (RAPD) markers and compared to inbreeding coefficients. J. Am. Soc. Hortic. Sci., 121: 1012-1019.
25. Weining, S. and P. Langridge, 1991. Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theor. Applied Genet., 82: 209-216.
26. Weining, S. and R.J. Henry, 1995. Molecular analysis of the DNA polymorphism of wild barley (Hordeum spontaneum) germplasm using the polymerase chain reaction. Genet. Res. Crop Evol., 42: 237-281.
27. Welsh, J. and M. McCeleand, 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucl. Acids Res., 18: 7213-7218.
28. Weising, K., H. Nybom, K. Wolff and W. Meyer, 1995. DNA finger-printing in plants and fungi. Boca Raton: CRC Press.
29. Williams, J.G.K., A.R. Kubelik, K.J. Livak, A. Rafalski and S.V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res., 18: 6531-6535.
30. Zhang, Q., M.A. Saghai-Maroof and R.W. Allard, 1990. Effects on adaptedness in ribosomal DNA copy number in population of wild barley (Hordeum vulgare ssp. spontaneum). Proc. Natl. Acad. Sci. USA., 87: 8741-8745.
31. Zhang, Q., M.A. Saghai-Maroof and A. Kleinhofs, 1993. Comparative diversity analysis of RFLPs and isozymes within and among populations of Hordeum vulgare ssp. spontaneum. Genetics, 134: 909-916.