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Volumn 70, Issue 3, 2007, Pages 550-556

Development of a PCR for the detection and identification of cyanobacterial nifD genes

Author keywords

Cyanobacteria; Environmental microbiology; Nitrogen fixation; Nitrogenase; PCR DGGE

Indexed keywords

NITROGENASE; RIBOSOME RNA;

EID: 34548130704     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2007.06.011     Document Type: Article
Times cited : (15)

References (33)
  • 1
    • 0027336566 scopus 로고
    • Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community
    • Bebout B.M., Fitzpatrick M.W., and Paerl H.W. Identification of the sources of energy for nitrogen fixation and physiological characterization of nitrogen-fixing members of a marine microbial mat community. Appl. Environ. Microbiol. 59 (1993) 1495-1503
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1495-1503
    • Bebout, B.M.1    Fitzpatrick, M.W.2    Paerl, H.W.3
  • 2
    • 0000421181 scopus 로고
    • Genetics and molecular-biology of alternative nitrogen-fixation systems
    • Bishop P.E., and Joerger R.D. Genetics and molecular-biology of alternative nitrogen-fixation systems. Annu. Rev. Plant Physiol. Plant Mol. Biol. 41 (1990) 109-125
    • (1990) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.41 , pp. 109-125
    • Bishop, P.E.1    Joerger, R.D.2
  • 3
    • 33750735729 scopus 로고    scopus 로고
    • The rice field cyanobacteria Anabaena azotica and Anabaena sp. CH1 express vanadium-dependent nitrogenase
    • Boison G., Steingen C., Stal L.J., and Bothe H. The rice field cyanobacteria Anabaena azotica and Anabaena sp. CH1 express vanadium-dependent nitrogenase. Arch. Microbiol. 186 (2006) 367-376
    • (2006) Arch. Microbiol. , vol.186 , pp. 367-376
    • Boison, G.1    Steingen, C.2    Stal, L.J.3    Bothe, H.4
  • 5
    • 0036842018 scopus 로고    scopus 로고
    • Diversity of diazotrophic unicellular cyanobacteria in the tropical North Atlantic Ocean
    • Falcon L.I., Cipriano F., Chistoserdov A.Y., and Carpenter E.J. Diversity of diazotrophic unicellular cyanobacteria in the tropical North Atlantic Ocean. Appl. Environ. Microbiol. 68 (2002) 5760-5764
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5760-5764
    • Falcon, L.I.1    Cipriano, F.2    Chistoserdov, A.Y.3    Carpenter, E.J.4
  • 6
    • 0002812776 scopus 로고
    • Assimilatory nitrogen metabolism and its regulation
    • Bryant D.A. (Ed), Kluwer Scientific Publications, Dordrecht, The Netherlands
    • Flores E., and Herrero A. Assimilatory nitrogen metabolism and its regulation. In: Bryant D.A. (Ed). The Molecular Biology of Cyanobacteria (1994), Kluwer Scientific Publications, Dordrecht, The Netherlands 487-517
    • (1994) The Molecular Biology of Cyanobacteria , pp. 487-517
    • Flores, E.1    Herrero, A.2
  • 7
    • 14644391543 scopus 로고    scopus 로고
    • Nitrogen assimilation and nitrogen control in cyanobacteria
    • Flores E., and Herrero A. Nitrogen assimilation and nitrogen control in cyanobacteria. Biochem. Soc. Trans. 33 (2005) 164-167
    • (2005) Biochem. Soc. Trans. , vol.33 , pp. 164-167
    • Flores, E.1    Herrero, A.2
  • 8
    • 0036718497 scopus 로고    scopus 로고
    • Molecular differentiation of the heterocystous cyanobacteria, Nostoc and Anabaena, based on complete nifD sequences
    • Henson B.J., Watson L.E., and Barnum S.R. Molecular differentiation of the heterocystous cyanobacteria, Nostoc and Anabaena, based on complete nifD sequences. Curr. Microbiol. 45 (2002) 161-164
    • (2002) Curr. Microbiol. , vol.45 , pp. 161-164
    • Henson, B.J.1    Watson, L.E.2    Barnum, S.R.3
  • 9
    • 1842442575 scopus 로고    scopus 로고
    • The evolutionary history of nitrogen fixation, as assessed by nifD
    • Henson B.J., Watson L.E., and Barnum S.R. The evolutionary history of nitrogen fixation, as assessed by nifD. J. Mol. Evol. 58 (2004) 390-399
    • (2004) J. Mol. Evol. , vol.58 , pp. 390-399
    • Henson, B.J.1    Watson, L.E.2    Barnum, S.R.3
  • 10
    • 1842579611 scopus 로고    scopus 로고
    • Molecular phylogeny of the heterocystous cyanobacteria (subsections IV and V) based on nifD
    • Henson B.J., Hesselbrock S.M., Watson L.E., and Barnum S.R. Molecular phylogeny of the heterocystous cyanobacteria (subsections IV and V) based on nifD. Int. J. Syst. Evol. Microbiol. 54 (2004) 493-497
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 493-497
    • Henson, B.J.1    Hesselbrock, S.M.2    Watson, L.E.3    Barnum, S.R.4
  • 11
    • 1842457611 scopus 로고    scopus 로고
    • A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis
    • Janse I., Bok J., and Zwart G. A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis. J. Microbiol. Methods 57 (2004) 279-281
    • (2004) J. Microbiol. Methods , vol.57 , pp. 279-281
    • Janse, I.1    Bok, J.2    Zwart, G.3
  • 12
    • 33846079730 scopus 로고    scopus 로고
    • Microbiological studies in hot springs at Daneborg and Scoresbysund
    • Rasch M., and Caning K. (Eds), Danish Polar Center, Copenhagen
    • Kühl M., Glud R.N., Rysgaard S., and Pedersen H. Microbiological studies in hot springs at Daneborg and Scoresbysund. In: Rasch M., and Caning K. (Eds). Zackenberg Ecological Research Operations, 9th Annual Report (2004), Danish Polar Center, Copenhagen 72-74
    • (2004) Zackenberg Ecological Research Operations, 9th Annual Report , pp. 72-74
    • Kühl, M.1    Glud, R.N.2    Rysgaard, S.3    Pedersen, H.4
  • 13
    • 0042048549 scopus 로고
    • Sequence of the nifD geneogy coding for the alpha subunit of dinitrogenase from the cyanobacterium Anabaena
    • Lammers P.J., and Haselkorn R. Sequence of the nifD geneogy coding for the alpha subunit of dinitrogenase from the cyanobacterium Anabaena. Cell 44 (1984) 905-911
    • (1984) Cell , vol.44 , pp. 905-911
    • Lammers, P.J.1    Haselkorn, R.2
  • 14
    • 10444269482 scopus 로고    scopus 로고
    • PCR analysis of the distribution of unicellular cyanobacterial diazotrophs in the Arabian Sea
    • Mazard S.L., Fuller N.J., Orcutt K.M., Bridle O., and Scanlan D.J. PCR analysis of the distribution of unicellular cyanobacterial diazotrophs in the Arabian Sea. Appl. Environ. Microbiol. 70 (2004) 7355-7364
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7355-7364
    • Mazard, S.L.1    Fuller, N.J.2    Orcutt, K.M.3    Bridle, O.4    Scanlan, D.J.5
  • 15
    • 0020468219 scopus 로고
    • Sequence of the gene coding for the beta-subunit of dinitrogenase from the blue-green alga Anabaena
    • Mazur B.J., and Chui C.F. Sequence of the gene coding for the beta-subunit of dinitrogenase from the blue-green alga Anabaena. Proc. Natl. Acad. Sci. U. S. A. 79 (1982) 6782-6786
    • (1982) Proc. Natl. Acad. Sci. U. S. A. , vol.79 , pp. 6782-6786
    • Mazur, B.J.1    Chui, C.F.2
  • 16
    • 0019204952 scopus 로고
    • Nucleotide sequence of a cyanobacterial nifH gene coding for nitrogenase reductase
    • Mevarech M., Rice D., and Haselkorn R. Nucleotide sequence of a cyanobacterial nifH gene coding for nitrogenase reductase. Proc. Natl. Acad. Sci. U. S. A. 77 (1980) 6476-6480
    • (1980) Proc. Natl. Acad. Sci. U. S. A. , vol.77 , pp. 6476-6480
    • Mevarech, M.1    Rice, D.2    Haselkorn, R.3
  • 17
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., de Waal E.C., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59 (1993) 695-700
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 18
    • 0023476285 scopus 로고
    • Detection and localization of single base changes by denaturing gradient gel electrophoresis
    • Myers R.M., Maniatis T., and Lerman L.S. Detection and localization of single base changes by denaturing gradient gel electrophoresis. Methods Enzymol. 155 (1987) 501-527
    • (1987) Methods Enzymol. , vol.155 , pp. 501-527
    • Myers, R.M.1    Maniatis, T.2    Lerman, L.S.3
  • 19
  • 20
    • 0029958504 scopus 로고    scopus 로고
    • Seasonal nitrogen fixation dynamics in a marine microbial mat: potential roles of cyanobacteria and microheterotrophs
    • Paerl H.W., Fitzpatrick M., and Bebout B.M. Seasonal nitrogen fixation dynamics in a marine microbial mat: potential roles of cyanobacteria and microheterotrophs. Limnol. Oceanogr. 41 (1996) 419-427
    • (1996) Limnol. Oceanogr. , vol.41 , pp. 419-427
    • Paerl, H.W.1    Fitzpatrick, M.2    Bebout, B.M.3
  • 22
    • 0018409915 scopus 로고
    • Generic assignments, strain histories and properties of pure cultures of cyanobacteria
    • Rippka R., Deruelles J., Waterbury J.B., Herdman M., and Stanier R.Y. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111 (1979) 1-61
    • (1979) J. Gen. Microbiol. , vol.111 , pp. 1-61
    • Rippka, R.1    Deruelles, J.2    Waterbury, J.B.3    Herdman, M.4    Stanier, R.Y.5
  • 23
    • 33750052548 scopus 로고    scopus 로고
    • On the reproducibility of microcosm experiments - different community composition in parallel phototrophic biofilm microcosms
    • Roeselers G., Zippel B., Staal M., van Loosdrecht M.C.M., and Muyzer G. On the reproducibility of microcosm experiments - different community composition in parallel phototrophic biofilm microcosms. FEMS Microbiol. Ecol. 58 (2006) 169-178
    • (2006) FEMS Microbiol. Ecol. , vol.58 , pp. 169-178
    • Roeselers, G.1    Zippel, B.2    Staal, M.3    van Loosdrecht, M.C.M.4    Muyzer, G.5
  • 25
    • 0142074115 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis in marine microbial ecology
    • Paul J.H. (Ed), Academic Press, New York
    • Schäfer H., and Muyzer G. Denaturing gradient gel electrophoresis in marine microbial ecology. In: Paul J.H. (Ed). Methods in Microbiology, Marine Microbiology (2001), Academic Press, New York 425-468
    • (2001) Methods in Microbiology, Marine Microbiology , pp. 425-468
    • Schäfer, H.1    Muyzer, G.2
  • 26
    • 46549100665 scopus 로고
    • Structure and development of a benthic marine microbial mat
    • Stal L.J., van Gemerden H., and Krumbein W.E. Structure and development of a benthic marine microbial mat. FEMS Microbiol. Lett. 31 (1985) 111-125
    • (1985) FEMS Microbiol. Lett. , vol.31 , pp. 111-125
    • Stal, L.J.1    van Gemerden, H.2    Krumbein, W.E.3
  • 27
    • 33144476814 scopus 로고    scopus 로고
    • In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats
    • Steunou A.S., Bhaya D., Bateson M.M., Melendrez M.C., Ward D.M., Brecht E., et al. In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 2398-2403
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 2398-2403
    • Steunou, A.S.1    Bhaya, D.2    Bateson, M.M.3    Melendrez, M.C.4    Ward, D.M.5    Brecht, E.6
  • 28
    • 0028987145 scopus 로고
    • Remarkable N2-fixing bacterial diversity detected in rice roots by molecular evolutionary analysis of nifH gene sequences
    • Ueda T., Suga Y., Yahiro N., and Matsuguchi T. Remarkable N2-fixing bacterial diversity detected in rice roots by molecular evolutionary analysis of nifH gene sequences. J. Bacteriol. 177 (1995) 1414-1417
    • (1995) J. Bacteriol. , vol.177 , pp. 1414-1417
    • Ueda, T.1    Suga, Y.2    Yahiro, N.3    Matsuguchi, T.4
  • 29
    • 0001945883 scopus 로고
    • Molecular evolution and taxonomy of the cyanobacteria
    • Bryant D.A. (Ed), Kluwer, Dordrecht, Netherlands
    • Wilmotte A. Molecular evolution and taxonomy of the cyanobacteria. In: Bryant D.A. (Ed). The Molecular Biology of the Cyanobacteria (1994), Kluwer, Dordrecht, Netherlands 1-25
    • (1994) The Molecular Biology of the Cyanobacteria , pp. 1-25
    • Wilmotte, A.1
  • 30
    • 29144488104 scopus 로고    scopus 로고
    • Expression of the nifH gene of a Herbaspirillum endophyte in wild rice species: daily rhythm during the light-dark cycle
    • You M., Nishiguchi T., Saito A., Isawa T., Mitsui H., and Minamisawa K. Expression of the nifH gene of a Herbaspirillum endophyte in wild rice species: daily rhythm during the light-dark cycle. Appl. Environ. Microbiol. 71 (2005) 8183-8190
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8183-8190
    • You, M.1    Nishiguchi, T.2    Saito, A.3    Isawa, T.4    Mitsui, H.5    Minamisawa, K.6
  • 32
    • 0030982636 scopus 로고    scopus 로고
    • Phylogeny of cyanobacterial nifH genes: evolutionary implications and potential applications to natural assemblages
    • Zehr J.P., Mellon M.T., and Hiorns W.D. Phylogeny of cyanobacterial nifH genes: evolutionary implications and potential applications to natural assemblages. Microbiology 143 Pt 4 (1997) 1443-1450
    • (1997) Microbiology , vol.143 , Issue.PART 4 , pp. 1443-1450
    • Zehr, J.P.1    Mellon, M.T.2    Hiorns, W.D.3
  • 33
    • 0038234799 scopus 로고    scopus 로고
    • Nitrogenase gene diversity and microbial community structure: a cross-system comparison
    • Zehr J.P., Jenkins B.D., Short S.M., and Steward G.F. Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ. Microbiol. 5 (2003) 539-554
    • (2003) Environ. Microbiol. , vol.5 , pp. 539-554
    • Zehr, J.P.1    Jenkins, B.D.2    Short, S.M.3    Steward, G.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.