Cloning and expression analysis of candidate genes involved in wax deposition along the growing barley (Hordeum vulgare) leaf

Planta

Volumn 226, Issue 6, 2007, Pages 1459-1473

  Richardson, Andrew ^a,g   Boscari, Alexandre ^a,h   Schreiber, Lukas ^b   Kerstiens, Gerhard ^c   Jarvis, Mike ^d   Herzyk, Pawel ^e   Fricke, Wieland ^a,f  

^a UNIVERSITY OF THE WEST OF SCOTLAND   (United Kingdom)

^b UNIVERSITY OF BONN   (Germany)

^c LANCASTER UNIVERSITY   (United Kingdom)

^d UNIVERSITY OF GLASGOW   (United Kingdom)

^e UNIVERSITY OF GLASGOW   (United Kingdom)

^f UNIVERSITY COLLEGE DUBLIN   (Ireland)

^g Millipore   (United Kingdom)

^h UNIVERSITÉ CÔTE D'AZUR   (France)

Author keywords

Cuticle; Epidermal cell development; Hordeum; Leaf growth; Microarray; Very long chain fatty acid elongation; Wax

Indexed keywords

WAX;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; BIOLOGY; DNA MICROARRAY; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HORDEUM; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, AMINO ACID; WAXES;

ARABIDOPSIS; HORDEUM; HORDEUM VULGARE;

EID: 34548036153     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-007-0585-0     Document Type: Article

References (57)

1. Aarts MGM, Keijzer CJ, Stiekema WJ, Pereira A (1995) Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. Plant Cell 7:2115-2127
2. Barnes J, Percy K, Paul N, Jones P, McLauchlin C, Mullineaux P, Creissen G, Wellburn A (1996) The influence of UV-B radiation on the physiochemical nature of tobacco (Nicotiana tabacum L.) leaf surface. J Exp Bot 47:99-109
3. Barthlott W, Neinhuis C (1997) Purity of the sacred lotus, or escape from the contamination in biological science. Planta 202:1-8
4. Breitling R, Herzyk P (2005) Rank-based methods as a non-parametric alternative of the t-statistic for the analysis of biological microarray data. J Bioinform Comput Biol 3:1171-1189
5. Breitling R, Armengaud P, Amtmann A, Herzyk P (2004a) A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett 573:83-92
6. Breitling R, Amtmann A, Herzyk P (2004b) Iterative group analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments. BMC Bioinformatics 5:34-41
7. Broadwater JA, Haas JA, Fox BG (1998) The fundamental, versatile role of diiron enzymes in lipid metabolism. Fett/Lipid 100:103-111
8. Brown BA, Cloix C, Jiang GH, Kaiserli E, Herzyk P, Kliebenstein DJ, Jenkins GI (2005) A UV-B-specific signaling component orchestrates plant UV protection. Proc Natl Acad Sci USA 102:18225-18230
9. Chen X, Goodwin SM, Boroff VL, Liu X, Jenks MA (2003) Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production. Plant Cell 15:1170-1185
10. Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise R (2004) A new resource for cereal genomics:22K barley GeneChip comes of age. Plant Physiol 134:960-968
11. Costaglioli P, Joubès J, Garcia C, Stef M, Arveiler B, Lessire R, Garbay B (2005) Profiling candidate genes involved in wax biosynthesis in Arabidopsis thaliana by microarray analysis. Biochim Biophys Acta 1734:247-258
12. Dietrich CR, Perera MADN, Yandeau-Nelson MD, Meeley RB, Nikolau BJ, Schnable PS (2005) Characterization of the GL8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development. Plant J 42:844-861
13. Eigenbrode SD (1996) Plant surface waxes and insect behaviour. In: Kerstiens G (ed) Plant cuticles-an integrated functional approach. BIOS Scientific Publishers Limited, Oxford, pp 201-222
14. Fiebig A, Mayfield JA, Miley NL, Chau S, Fischer RL, Preuss D (2000) Alterations in CER6, a gene identical to CUT1, differentially affects long-chain lipid content on the surface of pollen and stems. Plant Cell 12:2001-2008
15. Focke M, Gieginger E, Schwan S, Jänsch L, Binder S, Braun H-P (2003) Fatty acid biosynthesis in mitochondria of grasses: malonyl-coenzyme A is generated by a mitochondrial-localized acetylcoenzyme A carboxylase. Plant Physiol 133:875-884
16. Fricke W, Flowers TJ (1998) Control of leaf cell elongation in barley. Generation rates of osmotic pressure and turgor, and growth-associated water potential gradients. Planta 206:53-65
17. Fricke W, Peters WS (2002) The biophysics of leaf growth in salt-stressed barley. A study at the cell level. Plant Physiol 129:374-388
18. Hansen JD, Pyee J, Xia Y, Wen T-J, Robertson DS, Kolattukudy PE, Nikolau BJ, Schnable PS (1997) The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes. Plant Physiol 113:1091-1100
19. Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31:e15
20. Jakobsen MK, Poulsen LR, Schulz A, Fleurat-Lessard P, Møller A, Husted S, Schiøtt M, Amtmann A, Palmgren MG (2005) Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETOGENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase. Genes Develop 19:2757-2769
21. James DW Jr, Lim E, Keller J, Plooy I, Ralston E, Dooner HK (1995) Direct tagging of the Arabidopsis FATTY ACID ELONGATION1 (FAE1) gene with the maize transposon activator. Plant Cell 7:309-319
22. Jeffery IB, Higgins DJ, Culhane AC (2006) Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinformatics 7:359
23. Jenks MA, Ashworth EN (1999) Plant epicuticular waxes: function, production and genetics. Hortic Rev 23:1-68
24. Jenks MA, Joly RJ, Peters PJ, Rich PJ, Axtell JD, Ashworth EN (1994) Chemically induced cuticle mutation affecting epidermal conductance to water vapour and disease susceptibility in Sorghum bicolor (L.) Moench. Plant Physiol 105:1239-1245
25. Jenks MA, Tuttle HA, Eigenbrode SD, Feldman KA (1995) Leaf epicuticular waxes of the eceriferum mutants in Arabidopsis. Plant Physiol 108:369-377
26. Jung KH, Han MJ, Lee DY, Lee YS, Schreiber L, Franke R, Faust A, Yephremov A, Saedler H, Kim YW, Hwang I, An G (2006) Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development. Plant Cell 18:3015-3032
27. Kerstiens G (1996) Cuticular water permeability and its physiological significance. J Exp Bot 47:1813-1832
28. Kerstiens G (2006) Water transport in plant cuticles: an update. J Exp Bot 57:2493-2499
29. Kunst L, Samuels AL (2003) Biosynthesis and secretion of plant cuticular wax. Prog Lipid Res 42:51-80
30. Kunst L, Jetter R, Samuels AL (2006) Biosynthesis and transport of plant cuticular waxes. In: Riederer M, Muller C (eds) Biology of the plant cuticle. Blackwell Publishing, Oxford, pp 182-215
31. Kurata T, Kawabata-Awai C, Sakuradani S, Okada K, Wada T (2003) The YORE-YORE gene regulates multiple aspects of epidermal cell differentiation in Arabidopsis. Plant J 36:55-66
32. Lundqvist U, Lundqvist A (1988) Mutagen specificity in barley for 1580 eceriferum mutants localized to 79 loci. Hereditas 108:1-12
33. Millar AA, Kunst L (1997) Very-long-chain fatty acid biosynthesis is controlled through the expression and specificity of the condensing enzyme. Plant J 12:121-131
34. Millar AA, Clemens S, Zachgo S, Giblin EM, Taylor DC, Kunst L (1999) CUT1, an Arabidopsis gene required for cuticular wax biosynthesis and pollen fertility, encodes a very-long-chain fatty acid condensing enzyme. Plant Cell 11:825-838
35. Richardson A, Franke R, Kerstiens G, Jarvis M, Schreiber L, Fricke W (2005) Cuticular wax deposition in growing barley (Hordeum vulgare) leaves commences in relation to the point of emergence of epidermal cells from the sheaths of older leaves. Planta 222:472-483
36. Richardson A, Wojciechowski T, Franke R, Schreiber L, Kerstiens G, Jarvis M, Fricke W (2007) Cuticular permeance in relation to wax and cutin development along the growing barley (Hordeum vulgare) leaf. Planta 225:1471-1481
37. Riederer M, Schreiber L (2001) Protecting against water loss: analysis of the barrier properties of plant cuticles. J Exp Bot 52:2023-2032
38. Rossak M, Smith M, Kunst L (2001) Expression of the FAE1 gene and FAE1 promoter activity in developing seeds of Arabidospsis thaliana. Plant Mol Biol 46:717-725
39. Rowland O, Zheng H, Hepworth SR, Lam P, Jetter R, Kunst L (2006) CER4 encodes an alcohol-forming fatty acyl-coenzyme A reductase involved in cuticular wax production in Arabidopsis. Plant Physiol 142:866-877
40. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbour Laboratory Press, New York
41. 6- fatty acid desaturase. J Exp Bot 52:1581-1585
42. Schnurr J, Shockey J, Browse J (2004) The acyl-CoA synthetase encoded by LACS2 is essential for normal cuticle development in Arabidopsis. Plant Cell 16:629-642
43. Schreiber L, Schönherr J (1993) Mobilities of organic compounds in reconstituted cuticular wax of barley leaves: determination of diffusion coefficients. Pestic Sci 38:353-361
44. Schreiber L, Skrabs M, Hartmann K, Becker D, Cassagne C, Lessire R (2000) Biochemical and molecular characterization of corn (Zea mays L.) root elongases. Biochem Soc Trans 28:647-649
45. Schreiber L, Franke R, Lessire R (2005) Biochemical characterization of elongase activity in corn (Zea mays L.) roots. Phytochemistry 66:131-138
46. Shanklin J, Whittle E, Fox BG (1994) Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase. Biochemistry 33:12787-12794
47. Shen L, Gong J, Caldo RA, Nettleton D, Cook D, Wise RP, Dickerson JA (2005) BarleyBase-an expression profiling database for plant genomics. Nucleic Acids Res 33:D614-D618
48. Sturaro M, Hartings H, Schmelzer E, Velasco R, Salamini F, Motto M (2005) Cloning and characterization of GLOSSY1, a maize gene involved in cuticle membrane and wax production. Plant Physiol 138:478-489
49. Suh MC, Samuels AL, Jetter R, Kunst L, Pollard M, Ohlrogge J, Beisson F (2005) Cuticular lipid composition, surface structure, and gene expression in Arabidospis stem epidermis. Plant Physiol 139:1649-1665
50. Tacke E, Korfhage C, Michel D, Maddaloni M, Motto M, Lanzani S, Salamini F, Doring H-P (1995) Transposon tagging of the maize Glossy2 locus with the transposable element En/Spm. Plant J 8:907-917
51. Todd J, Post-Beittenmiller D, Jaworski JG (1999) KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabodopsis thaliana. Plant J 17:119-130
52. Vogg G, Fischer S, Leide J, Emmanuel E, Jetter R, Levy AA, Riederer M (2004) Tomato fruit cuticular waxes and the effects on transpiration barrier properties: functional characterisation of a mutant deficient in a very-long-chain fatty acid β-ketoacyl-CoA synthase. J Exp Bot 55:1401-1410
53. von Wettstein-Knowles P (2007) Analyses of barley spike mutant waxes identify alkenes, cyclopropanes and internally branched alkanes with dominating isomers at carbon 9. Plant J 49:250-264
54. Xu X, Dietrich CR, Delledonne M, Xia Y, Wen T-J, Robertson DS, Nikolau BJ, Schnable PS (1997) Sequence analysis of the cloned glossy8 gene of maize suggests that it may encode for a β-ketoacyl reductase required for the biosynthesis of cuticular waxes. Plant Physiol 115:501-510
55. Xu X, Dietrich CR, Lessire R, Nikolau BJ, Schnable PS (2002) The endoplasmic reticulum-associated maize GL8 protein is a component of the acyl-coenzyme A elongase involved in the production of cuticular waxes. Plant Physiol 128:924-934
56. Yephremov A, Wisman E, Huijser P, Huijser C, Wellesen K, Saedler H (1999) Characterization of the FIDDLEHEAD gene of Arabidopsis reveals link between adhesion response and cell differentiation in the epidermis. Plant Cell 11:2187-2201
57. Zheng H, Rowland O, Kunst L (2005) Disruptions of the Arabidopsis enoyl-CoA reductase gene reveal an essential role for very-long-chain fatty acid synthesis in cell expansion during plant morphogenesis. Plant Cell 17:1467-1481