메뉴 건너뛰기




Volumn 384, Issue 2, 2007, Pages 747-757

Order or chaos in Boolean gene networks depends on the mean fraction of canalizing functions

Author keywords

Boolean; Canalizing; Chaos; Gene network; Network; Noise; Order; Topology

Indexed keywords

BIOLOGICAL SYSTEMS; BOOLEAN FUNCTIONS; CHAOS THEORY; POISSON DISTRIBUTION;

EID: 34548016554     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2007.05.050     Document Type: Article
Times cited : (32)

References (26)
  • 1
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • Kauffman S. Metabolic stability and epigenesis in randomly constructed genetic nets. J. Theor. Biol. 22 (1969) 437
    • (1969) J. Theor. Biol. , vol.22 , pp. 437
    • Kauffman, S.1
  • 3
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: a literature review
    • Jong H.D. Modeling and simulation of genetic regulatory systems: a literature review. J. Comp. Biol. 9 1 (2002) 67-103
    • (2002) J. Comp. Biol. , vol.9 , Issue.1 , pp. 67-103
    • Jong, H.D.1
  • 4
    • 4143051643 scopus 로고    scopus 로고
    • Inferring models of gene expression dynamics
    • Perkins T.J., Hallett M., and Glass L. Inferring models of gene expression dynamics. J. Theor. Biol. 230 (2004) 289-299
    • (2004) J. Theor. Biol. , vol.230 , pp. 289-299
    • Perkins, T.J.1    Hallett, M.2    Glass, L.3
  • 5
    • 20744440332 scopus 로고    scopus 로고
    • Inferring genetic regulatory logic from expression data
    • Bulashevska S., and Eils R. Inferring genetic regulatory logic from expression data. Bioinformatics 21 11 (2005) 2706-2713
    • (2005) Bioinformatics , vol.21 , Issue.11 , pp. 2706-2713
    • Bulashevska, S.1    Eils, R.2
  • 6
    • 0037799461 scopus 로고    scopus 로고
    • Superpolynomial growth in the number of attractors in Kauffman networks
    • Samuelsson B., and Troein C. Superpolynomial growth in the number of attractors in Kauffman networks. Phys. Rev. Lett. 90 9 (2003) 098701
    • (2003) Phys. Rev. Lett. , vol.90 , Issue.9 , pp. 098701
    • Samuelsson, B.1    Troein, C.2
  • 7
    • 0345849436 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Ptashne M., and Gann A. Genes & Signals (2002), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • (2002) Genes & Signals
    • Ptashne, M.1    Gann, A.2
  • 8
    • 0035999984 scopus 로고    scopus 로고
    • Binary analysis and optimization-based normalization of gene expression data
    • Shmulevich I., and Zhang W. Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 18 4 (2002) 555-565
    • (2002) Bioinformatics , vol.18 , Issue.4 , pp. 555-565
    • Shmulevich, I.1    Zhang, W.2
  • 9
    • 33344471461 scopus 로고    scopus 로고
    • Updating schemes in random Boolean networks: do they really matter?
    • Pollack J., Bedau M., Husbands P., Ikegami T., and Watson R.A. (Eds), MIT Press, Cambridge, MA nlin.AO/0402006
    • Gershenson C. Updating schemes in random Boolean networks: do they really matter?. In: Pollack J., Bedau M., Husbands P., Ikegami T., and Watson R.A. (Eds). Artificial Life IX, Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems (2004), MIT Press, Cambridge, MA 238-243 nlin.AO/0402006
    • (2004) Artificial Life IX, Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems , pp. 238-243
    • Gershenson, C.1
  • 10
    • 18844380444 scopus 로고    scopus 로고
    • Robustness and fragility of Boolean models for genetic regulatory networks
    • Chaves M., Albert R., and Sontag E.D. Robustness and fragility of Boolean models for genetic regulatory networks. J. Theor. Biol. 235 3 (2005) 431-449
    • (2005) J. Theor. Biol. , vol.235 , Issue.3 , pp. 431-449
    • Chaves, M.1    Albert, R.2    Sontag, E.D.3
  • 11
    • 34548040092 scopus 로고    scopus 로고
    • C. Gershenson, Introduction to random Boolean networks, in: M. Bedau, P. Husbands, T. Hutton, S. Kumar, H. Suzuki (Eds.), Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALife IX), 2004, pp. 160-173, nlin.AO/0408006.
  • 12
    • 0141903547 scopus 로고    scopus 로고
    • Boolean dynamics of networks with scale-free topology
    • Aldana M. Boolean dynamics of networks with scale-free topology. Physica D: Nonlinear Phenom. 185 1 (2003) 45-66
    • (2003) Physica D: Nonlinear Phenom. , vol.185 , Issue.1 , pp. 45-66
    • Aldana, M.1
  • 13
    • 0042808605 scopus 로고    scopus 로고
    • A natural class of robust networks
    • Aldana M., and Cluzel P. A natural class of robust networks. Proc. Natl. Acad. Sci. USA 100 15 (2003) 8710-8714
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.15 , pp. 8710-8714
    • Aldana, M.1    Cluzel, P.2
  • 14
    • 10344259662 scopus 로고    scopus 로고
    • Genetic networks with canalizing Boolean rules are always stable
    • Kauffman S., Peterson C., Samuelsson B., and Troein C. Genetic networks with canalizing Boolean rules are always stable. Proc. Natl. Acad. Sci. USA 101 49 (2004) 17102-17107
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , Issue.49 , pp. 17102-17107
    • Kauffman, S.1    Peterson, C.2    Samuelsson, B.3    Troein, C.4
  • 15
  • 17
    • 0000872030 scopus 로고
    • Evolution of overlaps between configurations in random Boolean networks
    • Derrida B., and Weisbuch G. Evolution of overlaps between configurations in random Boolean networks. J. Phys. 47 8 (1986) 1297-1303
    • (1986) J. Phys. , vol.47 , Issue.8 , pp. 1297-1303
    • Derrida, B.1    Weisbuch, G.2
  • 18
    • 34248649758 scopus 로고    scopus 로고
    • Understanding genetic regulatory networks
    • Kauffman S. Understanding genetic regulatory networks. Int. J. Astrobiology 2 2 (2003) 131-139
    • (2003) Int. J. Astrobiology , vol.2 , Issue.2 , pp. 131-139
    • Kauffman, S.1
  • 20
    • 84924181828 scopus 로고    scopus 로고
    • Towards a theory of scale-free graphs: definition, properties, and implications
    • Alderson D., Doyle J.C., Li L., and Willinger W. Towards a theory of scale-free graphs: definition, properties, and implications. Internet Math. 2 4 (2005) 431-523
    • (2005) Internet Math. , vol.2 , Issue.4 , pp. 431-523
    • Alderson, D.1    Doyle, J.C.2    Li, L.3    Willinger, W.4
  • 21
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization
    • Barabási A.-L., and Oltvai Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5 (2004) 101-113
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
    • Barabási, A.-L.1    Oltvai, Z.N.2
  • 22
    • 84956252965 scopus 로고
    • Random networks of automata-a simple annealed approximation
    • Derrida Y., and Pomeau B. Random networks of automata-a simple annealed approximation. Europhys. Lett. 1 2 (1986) 45-49
    • (1986) Europhys. Lett. , vol.1 , Issue.2 , pp. 45-49
    • Derrida, Y.1    Pomeau, B.2
  • 23
    • 0345598902 scopus 로고    scopus 로고
    • Random Boolean network models and the yeast transcriptional network
    • Kauffman S., Peterson C., Samuelsson B., and Troein C. Random Boolean network models and the yeast transcriptional network. Proc. Natl. Acad. Sci. USA 100 25 (2003) 14796-14799
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.25 , pp. 14796-14799
    • Kauffman, S.1    Peterson, C.2    Samuelsson, B.3    Troein, C.4
  • 25
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee T.I., Rinaldi N.J., Robert F., Odom D.T., et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298 5594 (2002) 799-804
    • (2002) Science , vol.298 , Issue.5594 , pp. 799-804
    • Lee, T.I.1    Rinaldi, N.J.2    Robert, F.3    Odom, D.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.