Comparison of the TaqMan and LightCycler systems in evaluation of CYP2B6 516G>T polymorphism

Molecular and Cellular Probes

Volumn 21, Issue 5-6, 2007, Pages 408-411

  Chantarangsu, Soranun ^a   Cressey, Tim ^b   Mahasirimongkol, Surakameth ^c   Tawon, Yardpiroon ^b   Ngo Giang Huong, Nicole ^b   Jourdain, Gonzague ^b   Lallemant, Marc ^b   Chantratita, Wasun ^a  

^a MAHIDOL UNIVERSITY   (Thailand)

^b CHIANG MAI UNIVERSITY   (Thailand)

^c MINISTRY OF PUBLIC HEALTH   (Thailand)

Author keywords

Cytochrome P450 (CYP450); Pharmacogenetic testing; SimpleProbe probe; TaqMan probe

Indexed keywords

CYTOCHROME P450 2B6; NEVIRAPINE; ZIDOVUDINE;

ACCURACY; ARTICLE; CLINICAL TRIAL; COST BENEFIT ANALYSIS; DNA POLYMORPHISM; DOSE RESPONSE; DRUG METABOLISM; GENOTYPE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; INTERMETHOD COMPARISON; PRIORITY JOURNAL; PROPHYLAXIS; REAL TIME POLYMERASE CHAIN REACTION;

ARYL HYDROCARBON HYDROXYLASES; GUANINE; HUMANS; OXIDOREDUCTASES, N-DEMETHYLATING; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; THYMINE;

EID: 34547928361     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2007.06.008     Document Type: Article

References (18)

1. Kleyn P.W., and Vesell E.S. Genetic variation as a guide to drug development. Science 281 (1998) 1820-1821
2. Shastry B.S. Pharmacogenetics and the concept of individualized medicine. Pharmacogenomics J 6 (2006) 16-21
3. Haas D.W., Ribaudo H.J., Kim R.B., Tierney C., Wilkinson G.R., Gulick R.M., et al. Pharmacogenetics of efavirenz and central nervous system side effects: an adult AIDS clinical trials group study. AIDS 18 (2004) 2391-2400
4. Tsuchiya K., Gatanaga H., Tachikawa N., Teruya K., Kikuchi Y., Yoshino M., et al. Homozygous CYP2B6*6 (Q172H and K262R) correlates with high plasma efavirenz concentrations in HIV-1 patients treated with standard efavirenz-containing regimens. Biochem Biophys Res Commun 319 (2004) 1322-1326
5. Rotger M., Colombo S., Furrer H., Bleiber G., Buclin T., Lee B.L., et al. Influence of CYP2B6 polymorphism on plasma and intracellular concentrations and toxicity of efavirenz and nevirapine in HIV-infected patients. Pharmacogenet Genomics 15 (2005) 1-5
6. Shi M.M. Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies. Clin Chem 47 (2001) 164-172
7. Lallemant M., Jourdain G., Le Coeur S., Mary J.Y., Ngo-Giang-Huong N., Koetsawang S., et al. Single-dose perinatal nevirapine plus standard zidovudine to prevent mother-to-child transmission of HIV-1 in Thailand. N Engl J Med 351 (2004) 217-228
8. Ethical principles for medical research involving human subjects. World Medical Association Declaration of Helsinki. World Medical Association General Assembly, October 9, 2004. Available at: 〈http://www.wma.net/e/policy/pdf/17c.pdf〉.
9. McGuigan F.E., and Ralston S.H. Single nucleotide polymorphism detection: allelic discrimination using TaqMan. Psychiatr Genet 12 (2002) 133-136
10. Gameau L.J., Brown L.D., Moore M.A., Donnenhoffer J.E., and Demyan W.B. Biochemica 3 (2005) 4-6
11. Roses A.D. Pharmacogenetics and the practice of medicine. Nature 405 (2000) 857-865
12. Kwok P.Y. Methods for genotyping single nucleotide polymorphisms. Annu Rev Genomics Hum Genet 2 (2001) 235-258
13. O'Donovan M.C., Oefner P.J., Roberts S.C., Austin J., Hoogendoorn B., Guy C., et al. Blind analysis of denaturing high-performance liquid chromatography as a tool for mutation detection. Genomics 52 (1998) 44-49
14. Shi M.M., Bleavins M.R., and de la Iglesia F.A. Technologies for detecting genetic polymorphisms in pharmacogenomics. Mol Diagn 4 (1999) 343-351
15. Alderborn A., Kristofferson A., and Hammerling U. Determination of single-nucleotide polymorphisms by real-time pyrophosphate DNA sequencing. Genome Res 8 (2000) 1249-1258
16. Lipshutz R.J., Fodor S.P.A., Gingeras T.R., and Lockhart D.J. High density synthetic oligonucleotide arrays. Nat Genet 21 Suppl. 1 (1999) 20-24
17. Ross P., Hall L., Smirnov I., and Haff L. High level multiplex genotyping by MALDI-TOF mass spectrometry. Nat Biotechnol 16 (1998) 1347-1351
18. Wang J., Chuang K., Ahluwalia M., Patel S., Umblas N., Mirel D., et al. High-throughput SNP genotyping by single-tube PCR with Tm-shift primers. Biotechniques 39 (2005) 885-893