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Volumn 5, Issue 3, 2007, Pages 795-816

Research on parameterized algorithms of the individual haplotyping problem

Author keywords

Genotype; Haplotype; Parameterized algorithm; SNPs (single nucleotide polymorphisms)

Indexed keywords

DNA FRAGMENT;

EID: 34547892644     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720007002710     Document Type: Article
Times cited : (13)

References (18)
  • 1
    • 0031669184 scopus 로고    scopus 로고
    • Overlapping genomic sequences: A treasure trove of single-nucleotide polymorphisms
    • Miller TP, Gu Z, Li Q et al., Overlapping genomic sequences: A treasure trove of single-nucleotide polymorphisms, Genome Res 8 748-754, 1998.
    • (1998) Genome Res , vol.8 , pp. 748-754
    • Miller, T.P.1    Gu, Z.2    Li, Q.3
  • 2
    • 0035919656 scopus 로고    scopus 로고
    • Haplotype variation and linkage disequilibrium in 313 human genes
    • Stephens JC, Schneider JA, Tanguay DA et al., Haplotype variation and linkage disequilibrium in 313 human genes, Science 293 489-493, 2001.
    • (2001) Science , vol.293 , pp. 489-493
    • Stephens, J.C.1    Schneider, J.A.2    Tanguay, D.A.3
  • 3
    • 0033772073 scopus 로고    scopus 로고
    • Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus
    • Horikawa Y, Oda N, Cox NJ et al., Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus, Nat Genet 26:163-175, 2000.
    • (2000) Nat Genet , vol.26 , pp. 163-175
    • Horikawa, Y.1    Oda, N.2    Cox, N.J.3
  • 5
    • 17744388551 scopus 로고    scopus 로고
    • Polynomial and APX-hard cases of the individual haplotyping problem
    • Bafna V, Istrail S, Lancia G, Polynomial and APX-hard cases of the individual haplotyping problem, Theoretical Computer Science 335:109-125, 2005.
    • (2005) Theoretical Computer Science , vol.335 , pp. 109-125
    • Bafna, V.1    Istrail, S.2    Lancia, G.3
  • 6
    • 34547890776 scopus 로고    scopus 로고
    • Wernicke S, On the algorithmic tractability of single nucleotide polymorphism (SNP) analysis and related problems, Diploma Thesis, WSI fur Informatik, Universit at Tubingen, September 2003.
    • Wernicke S, On the algorithmic tractability of single nucleotide polymorphism (SNP) analysis and related problems, Diploma Thesis, WSI fur Informatik, Universit at Tubingen, September 2003.
  • 7
    • 0032991552 scopus 로고    scopus 로고
    • Characterization of single nucleotide polymorphisms in coding regions of human genes
    • Cargill M et al., Characterization of single nucleotide polymorphisms in coding regions of human genes, Nat Genet 22:231-238, 1999.
    • (1999) Nat Genet , vol.22 , pp. 231-238
    • Cargill, M.1
  • 8
    • 0036597864 scopus 로고    scopus 로고
    • The SNP Consortium, Summary of a private consortium effort to develop an applied map of the human genome
    • Holden AL, The SNP Consortium, Summary of a private consortium effort to develop an applied map of the human genome, BioTechniques 32 22-26, 2002.
    • (2002) BioTechniques , vol.32 , pp. 22-26
    • Holden, A.L.1
  • 9
    • 0035865322 scopus 로고    scopus 로고
    • 40 authors), A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
    • The International SNP Map Working Group approx
    • The International SNP Map Working Group (approx. 40 authors), A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms, Nature, 409:928-933, 2001.
    • (2001) Nature , vol.409 , pp. 928-933
  • 10
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Sanger F, Nicklen S, Coulson AR, DNA sequencing with chain-terminating inhibitors, PNAS 74(12):5463-5467, 1977.
    • (1977) PNAS , vol.74 , Issue.12 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 11
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium, Initial sequencing and analysis of the human genome, Nature 409:860-921, 2001.
    • (2001) Nature , vol.409 , pp. 860-921
  • 12
    • 13844313862 scopus 로고    scopus 로고
    • Whole-genome patterns of common DNA variation in three human populations
    • Hinds DA, Stuve LL, Nilsen GB et al., Whole-genome patterns of common DNA variation in three human populations, Science 307 1072-1079, 2005.
    • (2005) Science , vol.307 , pp. 1072-1079
    • Hinds, D.A.1    Stuve, L.L.2    Nilsen, G.B.3
  • 13
    • 18444369013 scopus 로고    scopus 로고
    • The structure of haplotype blocks in the human genome
    • Gabriel SB, Schaffner SF, Nguyen H et al., The structure of haplotype blocks in the human genome, Science 296:2225-2229, 2002.
    • (2002) Science , vol.296 , pp. 2225-2229
    • Gabriel, S.B.1    Schaffner, S.F.2    Nguyen, H.3
  • 14
    • 0030950735 scopus 로고    scopus 로고
    • Human whole-genome shotgun sequencing
    • Weber JL, Myers EW, Human whole-genome shotgun sequencing, Genome Research 7(5):401-409, 1997.
    • (1997) Genome Research , vol.7 , Issue.5 , pp. 401-409
    • Weber, J.L.1    Myers, E.W.2
  • 15
    • 0017216776 scopus 로고
    • Testing for consecutive ones property, interval graphs and planarity using PQ-tree algorithms
    • Booth KS, Lueker SG, Testing for consecutive ones property, interval graphs and planarity using PQ-tree algorithms, J Comput Syst Sci 13:335-379, 1976.
    • (1976) J Comput Syst Sci , vol.13 , pp. 335-379
    • Booth, K.S.1    Lueker, S.G.2
  • 16
    • 35048834697 scopus 로고    scopus 로고
    • A fast heuristic for single individual SNP haplotype reconstruction
    • Proceedings of WABI 2004, Springer-Verlag, Bergen, Norway
    • Panconesi A, Sozio M, Fast hare: A fast heuristic for single individual SNP haplotype reconstruction, Proceedings of WABI 2004, LNCS Springer-Verlag, Bergen, Norway, 2004.
    • (2004) LNCS
    • Panconesi, A.1    Sozio, M.2    hare, F.3
  • 17
    • 24944512986 scopus 로고    scopus 로고
    • Algorithm engineering for optimal graph bipartization
    • Proceedings of the 4th International Workshop on Efficient and Experimental Algorithms WEA 2005, Santorini Island, Greece
    • Hüffner F, Algorithm engineering for optimal graph bipartization, Proceedings of the 4th International Workshop on Efficient and Experimental Algorithms (WEA 2005), Santorini Island, Greece, LNCS, Vol. 3503, pp. 240-252, 2005.
    • (2005) LNCS , vol.3503 , pp. 240-252
    • Hüffner, F.1
  • 18
    • 0033291476 scopus 로고    scopus 로고
    • A dataset generator for whole genome shotgun sequencing
    • Myers G, A dataset generator for whole genome shotgun sequencing, Proc Int Conf Intell Syst Mol Biol, pp. 202-210, 1999.
    • (1999) Proc Int Conf Intell Syst Mol Biol , pp. 202-210
    • Myers, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.