-
1
-
-
19344377263
-
Identifying protein function-a call for community action
-
368155 15024411 10.1371/journal.pbio.0020042
-
Roberts RJ Identifying protein function-a call for community action PLoS Biol 2004 2 3 E42 368155 15024411 10.1371/journal.pbio.0020042
-
(2004)
PLoS Biol
, vol.2
-
-
Roberts, R.J.1
-
2
-
-
6044244615
-
'Conserved hypothetical' proteins: Prioritization of targets for experimental study
-
524295 15479782 10.1093/nar/gkh885
-
Galperin MY Koonin EV 'Conserved hypothetical' proteins: Prioritization of targets for experimental study Nucl Acids Res 2004 32 18 5452-5463 524295 15479782 10.1093/nar/gkh885
-
(2004)
Nucl Acids Res
, vol.32
, Issue.18
, pp. 5452-5463
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
3
-
-
19244366327
-
Call for an enzyme genomics initiative
-
507876 15287973 10.1186/gb-2004-5-8-401
-
Karp P Call for an enzyme genomics initiative Genome Biology 2004 5 8 401 507876 15287973 10.1186/gb-2004-5-8-401
-
(2004)
Genome Biology
, vol.5
, Issue.8
, pp. 401
-
-
Karp, P.1
-
4
-
-
13744256137
-
Orphan enzymes?
-
10.1126/science.307.5706.42a
-
Lespinet O Labedan B Orphan enzymes? Science 2005 307 5706 42a 10.1126/ science.307.5706.42a
-
(2005)
Science
, vol.307
, Issue.5706
-
-
Lespinet, O.1
Labedan, B.2
-
5
-
-
0031572945
-
Enzyme Nomenclature. Recommendations 1992. Supplement 4: Corrections and additions (1997)
-
Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). 10.1111/j.1432-1033.1997.001_1.x 9431984
-
Barrett A Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). Enzyme Nomenclature. Recommendations 1992. Supplement 4: Corrections and additions (1997) Eur J Biochem 1997 250 1 1-6 10.1111/j.1432-1033.1997.001_1.x 9431984
-
(1997)
Eur J Biochem
, vol.250
, Issue.1
, pp. 1-6
-
-
Barrett, A.1
-
6
-
-
33750267965
-
ORENZA: A web resource for studying ORphan ENZyme activities
-
1609188 17026747 10.1186/1471-2105-7-436
-
Lespinet O Labedan B ORENZA: A web resource for studying ORphan ENZyme activities BMC Bioinformatics 2006 7 436 1609188 17026747 10.1186/ 1471-2105-7-436
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 436
-
-
Lespinet, O.1
Labedan, B.2
-
7
-
-
33645895566
-
Orphan enzymes could be an unexplored reservoir of new drug targets
-
10.1016/j.drudis.2006.02.002 16580971
-
Lespinet O Labedan B Orphan enzymes could be an unexplored reservoir of new drug targets Drug Discov Today 2006 11 7-8 300-305 10.1016/ j.drudis.2006.02.002 16580971
-
(2006)
Drug Discov Today
, vol.11
, Issue.7-8
, pp. 300-305
-
-
Lespinet, O.1
Labedan, B.2
-
9
-
-
84886759082
-
-
Enzyme Genomics Site http://bioinformatics.ai.sri.com/enzyme-genomics
-
-
-
-
10
-
-
33746781022
-
Identification and characterization of a lysophosphatidylcholine acyltransferase in alveolar type II cells
-
1544237 16864775 10.1073/pnas.0604946103
-
Chen X Hyatt BA Mucenski ML Mason RJ Shannon JM Identification and characterization of a lysophosphatidylcholine acyltransferase in alveolar type II cells Proc Natl Acad Sci USA 2006 103 31 11724-11729 1544237 16864775 10.1073/pnas.0604946103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.31
, pp. 11724-11729
-
-
Chen, X.1
Hyatt, B.A.2
Mucenski, M.L.3
Mason, R.J.4
Shannon, J.M.5
-
11
-
-
14844326483
-
Computational prediction of human metabolic pathways from the complete human genome
-
549063 15642094 10.1186/gb-2004-6-1-r2
-
Romero P Wagg J Green ML Kaiser D Krummenacker M Karp PD Computational prediction of human metabolic pathways from the complete human genome Genome Biol 2005 6 1 R2 549063 15642094 10.1186/gb-2004-6-1-r2
-
(2005)
Genome Biol
, vol.6
, Issue.1
-
-
Romero, P.1
Wagg, J.2
Green, M.L.3
Kaiser, D.4
Krummenacker, M.5
Karp, P.D.6
-
12
-
-
0031897589
-
Predicting functions from protein sequences-where are the bottlenecks?
-
10.1038/ng0498-313 9537411
-
Bork P Koonin E Predicting functions from protein sequences-where are the bottlenecks? Nature Genetics 1998 18 4 313-318 10.1038/ng0498-313 9537411
-
(1998)
Nature Genetics
, vol.18
, Issue.4
, pp. 313-318
-
-
Bork, P.1
Koonin, E.2
-
13
-
-
0031797096
-
What we do not know about sequence analysis and sequence databases
-
10.1093/bioinformatics/14.9.753 10366280
-
Karp PD What we do not know about sequence analysis and sequence databases Bioinformatics 1998 14 9 753-754 10.1093/bioinformatics/ 14.9.753 10366280
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 753-754
-
-
Karp, P.D.1
-
14
-
-
0033569629
-
Keeping Genome Databases Clean and Up to Date
-
10.1126/science.286.5439.447 10577208
-
Pennisi E Keeping Genome Databases Clean and Up to Date Science 1999 286 5439 447-450 10.1126/science.286.5439.447 10577208
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 447-450
-
-
Pennisi, E.1
-
15
-
-
9144265895
-
Retrieving sequences of enzymes experimentally characterized but erroneously annotated: The case of the putrescine carbamoyltransferase
-
514541 15287962 10.1186/1471-2164-5-52
-
Naumoff D Xu Y Glansdorff N Labedan B Retrieving sequences of enzymes experimentally characterized but erroneously annotated: The case of the putrescine carbamoyltransferase BMC Genomics 2004 5 1 52 514541 15287962 10.1186/1471-2164-5-52
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 52
-
-
Naumoff, D.1
Xu, Y.2
Glansdorff, N.3
Labedan, B.4
-
16
-
-
33645049066
-
Puzzling over orphan enzymes
-
10.1007/s00018-005-5520-6 16465439
-
Lespinet O Labedan B Puzzling over orphan enzymes Cell Mol Life Sci 2006 63 5 517-523 10.1007/s00018-005-5520-6 16465439
-
(2006)
Cell Mol Life Sci
, vol.63
, Issue.5
, pp. 517-523
-
-
Lespinet, O.1
Labedan, B.2
-
18
-
-
84886755478
-
-
EcoCyc orphan page http://ecocyc.org/enzymes.shtml
-
-
-
-
19
-
-
33644877904
-
MetaCyc: A multiorganism database of metabolic pathways and enzymes
-
Database 1347490 16381923 10.1093/nar/gkj128
-
Caspi R Foerster H Fulcher CA Hopkinson R Ingraham J Kaipa P Krummenacker M Paley S Pick J Rhee SY Tissier C Zhang P Karp PD MetaCyc: a multiorganism database of metabolic pathways and enzymes Nucleic Acids Res 2006 34 Database D511-516 1347490 16381923 10.1093/nar/gkj128
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Hopkinson, R.4
Ingraham, J.5
Kaipa, P.6
Krummenacker, M.7
Paley, S.8
Pick, J.9
Rhee, S.Y.10
Tissier, C.11
Zhang, P.12
Karp, P.D.13
-
20
-
-
84886766738
-
-
ORENZA http://www.orenza.u-psud.fr
-
-
-
-
21
-
-
2442681699
-
Identification of the two missing bacterial genes involved in thiamine salvage: Thiamine pyrophosphokinase and thiamine kinase
-
415752 15150256 10.1128/JB.186.11.3660-3662.2004
-
Melnick J Lis E Park J-H Kinsland C Mori H Baba T Perkins J Schyns G Vassieva O Osterman A Begley TP Identification of the two missing bacterial genes involved in thiamine salvage: Thiamine pyrophosphokinase and thiamine kinase J Bacteriol 2004 186 11 3660-3662 415752 15150256 10.1128/JB.186.11.3660-3662.2004
-
(2004)
J Bacteriol
, vol.186
, Issue.11
, pp. 3660-3662
-
-
Melnick, J.1
Lis, E.2
Park, J.-H.3
Kinsland, C.4
Mori, H.5
Baba, T.6
Perkins, J.7
Schyns, G.8
Vassieva, O.9
Osterman, A.10
Begley, T.P.11
-
22
-
-
0034033261
-
History of the enzyme nomenclature system
-
10.1093/bioinformatics/16.1.34 10812475
-
Tipton K Boyce S History of the enzyme nomenclature system Bioinformatics 2000 16 34-40 10.1093/bioinformatics/16.1.34 10812475
-
(2000)
Bioinformatics
, vol.16
, pp. 34-40
-
-
Tipton, K.1
Boyce, S.2
-
23
-
-
33645958298
-
BioWarehouse: A bioinformatics database warehouse toolkit
-
1444936 16556315 10.1186/1471-2105-7-170
-
Lee TJ Pouliot Y Wagner V Gupta P Stringer-Calvert DW Tenenbaum JD Karp PD BioWarehouse: A bioinformatics database warehouse toolkit BMC Bioinformatics 2006 7 1 170 1444936 16556315 10.1186/1471-2105-7-170
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 170
-
-
Lee, T.J.1
Pouliot, Y.2
Wagner, V.3
Gupta, P.4
Stringer-Calvert, D.W.5
Tenenbaum, J.D.6
Karp, P.D.7
-
24
-
-
84886762338
-
-
BioWarehouse http://bioinformatics.ai.sri.com/biowarehouse/
-
-
-
-
25
-
-
84886755721
-
-
ExPASY Proteomics Server http://www.expasy.org/cgi-bin/sprot-search-ful
-
-
-
-
26
-
-
84886755855
-
-
IUBMB database http://www.chem.qmul.ac.uk/iubmb/enzyme/
-
-
-
-
27
-
-
84886761612
-
-
MetaCyc http://www.metacyc.org
-
-
-
-
28
-
-
0037459099
-
Structural and enzymatic characterization of physarolisin (formerly physaropepsin) proves that it is a unique serine-carboxyl proteinase
-
10.1016/S0006-291X(03)00083-4 12589815
-
Nishii W Ueki T Miyashita R Kojima M Kim Y Sasaki N K M-M Takahashi K Structural and enzymatic characterization of physarolisin (formerly physaropepsin) proves that it is a unique serine-carboxyl proteinase Biochem Biophys Res Commun 2003 301 4 1023-1029 10.1016/ S0006-291X(03)00083-4 12589815
-
(2003)
Biochem Biophys Res Commun
, vol.301
, Issue.4
, pp. 1023-1029
-
-
Nishii, W.1
Ueki, T.2
Miyashita, R.3
Kojima, M.4
Kim, Y.5
Sasaki, N.K.M.-M.6
Takahashi, K.7
-
29
-
-
1542704952
-
Cloming, sequence analysis of imidase gene from Alcaligenes eatrophus and its expression in E coli
-
12557390
-
Wang Y Zhang Y Ding J Li uY Wang J Yu Z Cloming, sequence analysis of imidase gene from Alcaligenes eatrophus and its expression in E coli Wei Sheng Wu Xue Bao 2002 42 2 153-162 12557390
-
(2002)
Wei Sheng Wu Xue Bao
, vol.42
, Issue.2
, pp. 153-162
-
-
Wang, Y.1
Zhang, Y.2
Ding, J.3
Li, uY.4
Wang, J.5
Yu, Z.6
-
30
-
-
0042538710
-
Discovery, purification, and properties of o-phthalyl amidase from Xanthobacter agilis
-
10.1016/1381-1177(96)00011-2
-
Briggs B Kreuzman A Whitesitt C Yeh W-K Zmijewski M Discovery, purification, and properties of o-phthalyl amidase from Xanthobacter agilis Journal of Molecular Catalysis B: Enzymatic 1996 2 1 53-69 10.1016/1381-1177(96)00011-2
-
(1996)
Journal of Molecular Catalysis B: Enzymatic
, vol.2
, Issue.1
, pp. 53-69
-
-
Briggs, B.1
Kreuzman, A.2
Whitesitt, C.3
Yeh, W.-K.4
Zmijewski, M.5
-
31
-
-
0029928952
-
Cloning and expression of a gene encoding a bacterial enzyme for decontamination of organophosphorus nerve agents and nucleotide sequence of the enzyme
-
167937 8633861
-
Cheng T Harvey S Chen G Cloning and expression of a gene encoding a bacterial enzyme for decontamination of organophosphorus nerve agents and nucleotide sequence of the enzyme Appl Environ Microbiol 1996 62 5 1636-1641 167937 8633861
-
(1996)
Appl Environ Microbiol
, vol.62
, Issue.5
, pp. 1636-1641
-
-
Cheng, T.1
Harvey, S.2
Chen, G.3
-
32
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch A Apweiler R Wu CH Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Natale DA O'Donovan C Redaschi N Yeh LS The Universal Protein Resource (UniProt) Nucl Acids Res 2005 33 suppl 1 D154-159
-
(2005)
Nucl Acids Res
, vol.33
, Issue.SUPPL. 1
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
34
-
-
0031572945
-
Enzyme Nomenclature. Recommendations 1992. Supplement 5: Corrections and additions (1999)
-
Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB)
-
Barrett A Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). Enzyme Nomenclature. Recommendations 1992. Supplement 5: Corrections and additions (1999) Eur J Biochem 1999 250 1 1-6
-
(1999)
Eur J Biochem
, vol.250
, Issue.1
, pp. 1-6
-
-
Barrett, A.1
-
35
-
-
0033963089
-
The ENZYME database in 2000
-
102465 10592255 10.1093/nar/28.1.304
-
Bairoch A The ENZYME database in 2000 Nucl Acids Res 2000 28 1 304-305 102465 10592255 10.1093/nar/28.1.304
-
(2000)
Nucl Acids Res
, vol.28
, Issue.1
, pp. 304-305
-
-
Bairoch, A.1
-
36
-
-
13444293344
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL Barrett T Benson DA Bryant SH Canese K Church DM DiCuccio M Edgar R Federhen S Helmberg W Kenton DL Khovayko O Lipman DJ Madden TL Maglott DR Ostell J Pontius JU Pruitt KD Schuler GD Schriml LM Sequeira E Sherry ST Sirotkin K Starchenko G Suzek TO Tatusov R Tatusova TA Wagner L Yaschenko E Database resources of the National Center for Biotechnology Information Nucl Acids Res 2005 33 suppl 1 D39-45
-
(2005)
Nucl Acids Res
, vol.33
, Issue.SUPPL. 1
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Church, D.M.6
DiCuccio, M.7
Edgar, R.8
Federhen, S.9
Helmberg, W.10
Kenton, D.L.11
Khovayko, O.12
Lipman, D.J.13
Madden, T.L.14
Maglott, D.R.15
Ostell, J.16
Pontius, J.U.17
Pruitt, K.D.18
Schuler, G.D.19
Schriml, L.M.20
Sequeira, E.21
Sherry, S.T.22
Sirotkin, K.23
Starchenko, G.24
Suzek, T.O.25
Tatusov, R.26
Tatusova, T.A.27
Wagner, L.28
Yaschenko, E.29
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