Genetic structure and evolution of natural populations of viruses causing the tomato yellow leaf curl disease in Spain

Virus Research

Volumn 128, Issue 1-2, 2007, Pages 43-51

  Font, María Isabel ^a   Rubio, Luis ^b   Martínez Culebras, Pedro Vicente ^a   Jordá, Concepción ^a  

^a UNIVERSITAT POLITÈCNICA DE VALÈNCIA   (Spain)

^b INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

Author keywords

Begomovirus; Geminiviridae; Recombination; TYLCSV; TYLCV; Variability

Indexed keywords

ARTICLE; CROP; DNA FINGERPRINTING; GEMINIVIRUS; GENETIC VARIABILITY; HAPLOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PLANT VIRUS; PRIORITY JOURNAL; SOLANUM; SPAIN; TOMATO YELLOW LEAF CURL SARDINIA VIRUS; TOMATO YELLOW LEAF CURL VIRUS; VIRUS; VIRUS INFECTION; VIRUS ISOLATION;

AGRICULTURE; BEGOMOVIRUS; DNA, VIRAL; EVOLUTION, MOLECULAR; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANT LEAVES; SEQUENCE ANALYSIS, DNA; SPAIN; VARIATION (GENETICS);

BEGOMOVIRUS; GEMINIVIRIDAE; LYCOPERSICON ESCULENTUM; TOMATO YELLOW LEAF CURL SARDINIA VIRUS; TOMATO YELLOW LEAF CURL VIRUS;

EID: 34547784460     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2007.04.003     Document Type: Article

References (49)

1. Accotto G.P., Navas-Castillo J., Noris E., Moriones E., and Louro D. Typing of tomato yellow leaf curl viruses in Europe. Eur. J. Plant Pathol. 106 (2000) 179-186
2. Brown J.K., Frohlich D.R., and Rosell R.C. The sweetpotato or silverleaf white flies: biotypes of Bemisia tabaci or a species complex?. Annu. Rev. Entomol. 40 (1995) 511-534
3. Caciagli P., Bosco D., and Lina A.-B. Relationships of the Sardinian isolate of tomato yellow leaf curl geminivirus with its whitefly vector Bemisia tabaci Gen. Eur. J. Plant Pathol. 101 (1995) 163-170
4. Cohen S., and Harpaz I. Periodic, rather than continual acquisition of new tomato virus by its vector, the tobacco whitefly (Bemisia tabaci Gennadius). Entomol. Exp. Appl. 7 (1964) 155-166
5. Cohen S., and Nitzany F.E. Transmission and host range of tomato yellow leaf curl virus. Phytopathology 56 (1966) 1127-1133
6. Czosnek H., and Laterrot H. A worldwide survey of tomato yellow leaf curl viruses. Arch. Virol. 142 (1997) 1391-1406
7. Domingo E., and Holland J.J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51 (1997) 151-178
8. Fauquet C.M., and Stanley J. Revision the way we conceive and name viruses below the species level: a review of geminivirus taxonomy calls for new standardized isolate descriptors. Arch. Virol. 150 (2005) 2151-2179
9. Font, I., 2003, Tomato yellow leaf curl viruses in tomato crops of Spain: variability, characterization of isolates. Ph.D. Thesis. Universidad Politécnica de Valencia, Spain.
10. Font I., Martínez-Culebras P., and Jordá C. First report of Tomato yellow leaf curl virus-Is (TYLCV-Is) in the Canary islands. Plant Dis. 84 (2000) 1046
11. Font M.I., Córdoba C., García A., Santiago R., and Jordá C. First report of tobacco as a natural host of tomato yellow leaf curl virus in Spain. Plant Dis. 89 (2005) 910
12. Fraile A., Malpica J.M., Aranda M.A., Rodríguez-Cerezo E., and García-Arenal F. Genetic diversity in tobacco mild green mosaic tobamovirus infecting the wild plant Nicotiana glauca. Virology 223 (1996) 148-155
13. Fraile A., Escriu F., Aranda M.A., Malpica J.M., Gibbs A.J., and García-Arenal F. A century of tobamovirus evolution in an Australian population of Nicotiana glauca. J. Virol. 71 (1997) 8316-8320
14. García-Arenal F., Fraile A., and Malpica J.M. Variability and genetic structure of plant virus populations. Annu. Rev. Phytopathol. 39 (2001) 157-186
15. Jordá C., Font I., Martínez P., Juárez M., Ortega A., and Lacasa A. Current status and new natural host of Tomato yellow leaf curl virus (TYLCV) in Spain. Plant Dis. 85 (2001) 445
16. Jupin I., Kouchnovsky F., de Jouanneau F., and Gronenborn B. Movement of tomato yellow leaf curl geminivirus (TYLCV): involvement of the protein encoded by ORF C4. Virology 204 (1994) 82-90
17. Kheyr-Pour A., Bendahmane M., Matzeit N., Accotto G.P., Crespi S., and Gronemborn B. Tomato yellow leaf curl virus from Sardinia is a whitefly-transmitted geminivirus. Nucleic Acids Res. 19 (1991) 6763-6769
18. Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA 2: Molecular Evolutionary Genetics Analysis Software (2001), Arizona State University, Tempe Arizona, U.S.A.
19. Lynch M., and Crease T.J. The analysis of population survey data on DNA sequence variation. Mol. Biol. Evol. 7 (1990) 377-394
20. Monci F., Navas-Castillo J., Cenis J.L., Lacasa A., Benazoun A., and Moriones E. Spread of tomato yellow leaf curl virus Sar from the Mediteranean Basin: presence in the Canary islands and Morocco. Plant Dis. 84 (2000) 490
21. Monci F., Navas-Castillo J., and Moriones E. Evidence of a naturally occurring recombinant between tomato yellow leaf curl virus and tomato yellow leaf curl Sardinia virus in Spain. Plant Dis. 85 (2001) 1289
22. Monci F., Sánchez-Campos S., Navas-Castillo J., and Moriones E. A natural recombinant between the geminiviruses tomato yellow leaf curl Sardinia virus and tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish population. Virology 303 (2002) 317-326
23. Moriones E., Arnó J., Accotto G.P., Noris E., and Cavallarin L. First report of tomato yellow leaf curl virus in Spain. Plant Dis. 77 (1993) 953
24. Moriones E., and Navas-Castillo J. Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Virus Res. 71 (2000) 123-134
25. Moya A., Rodríguez-Cerezo E., and García-Arenal F. Genetic structure of natural populations of the plant RNA virus tobacco mild green mosaic virus. Mol. Biol. Evol. 10 (1993) 449-456
26. Moya A., Holmes E.C., and Gonzalez-Candelas F. The population genetics and evolutionary epidemiology of RNA viruses. Nat. Rev. Microbiol. 2 (2004) 279-288
27. Navas-Castillo J., Sánchez-Campos S., Díaz J.A., Sáez-Alonso E., and Moriones E. First report of tomato yellow leaf curl virus-Is in Spain: coexistence of two different geminiviruses in the same epidemic outbreak. Plant Dis. 81 (1997) 1461
28. Navas-Castillo J., Sánchez-Campos S., Díaz J.A., Sáez-Alonso E., and Moriones E. Tomato yellow leaf curl virus-Is causes a novel disease of common bean and serve epidemics in tomato in Spain. Plant Dis. 83 (1999) 29-32
29. Navas-Castillo J., Sanchez-Campos S., Noris E., Louro D., Accotto G.P., and Moriones E. Natural recombination between tomato yellow leaf curl virus-Is and tomato leaf curl virus. J. Gen. Virol. 81 (2000) 2797-2801
30. Navot N., Pichersky E., Zeidan M., Zamir D., and Czosnek H. Tomato yellow leaf curl virus: a whitefly-transmitted geminivirus with a single genomic component. Virology 185 (1991) 151-161
31. Noris E., Hidalgo E., Accotto G.P., and Moriones E. High similarity among the tomato yellow leaf curl virus isolates from the west mediterranean basin: the nucleotide sequence of an infectious clone from Spain. Arch. Virol. 135 (1994) 165-170
32. Noris E., Vaira A.M., Caciagli P., Masenga V., Gronenborn B., and Accotto G.P. Amino acids in the capsid protein of Tomato yellow leaf curl virus that are crucial for systemic infection, particle formation, and insect transmission. J. Virol. 72 (1998) 10050-10057
33. Padidam M., Sawyer S., and Fauquet C.M. Possible emergence of new geminiviruses by frequent recombination. Virology 265 (1999) 218-225
34. Quiñones M., Fonseca D., Martínez Y., and Accotto G.P. First report of Tomato yellow leaf curl virus infecting pepper plants in Cuba. Plant Dis. 86 (2002) 73
35. Reina J., Morilla G., Bejarano E.R., Rodriguez M.D., Janssen D., and Cuadrado I.M. First report of Capsicum annuum plants infected by tomato yellow leaf curl virus. Plant Dis. 83 (1999) 1176
36. Rodríguez-Cerezo E., Elena S.F., Moya A., and García-Arenal F. High genetic stability in natural populations of the plant RNA virus tobacco mild green mosaic virus. J. Mol. Evol. 32 (1991) 328-332
37. Roossinck M.J. Mechanisms of plant virus evolution. Annu. Rev. Phytopathol. 35 (1997) 1953-1965
38. Rubio L., Abou-Jawdah Y., Lin H.X., and Falk B.W. Geographically distant isolates of the Crinivirus, cucurbit yellow stunting disorder virus (CYSDV), show very low genetic diversity in the coat protein gene. J. Gen. Virol. 82 (2001) 929-933
39. Rubio L., Font I., Jordá C., Serra J., Durán N., Moreno P., and Guerra J. Incidencia de los virus del rizado amarillo del tomate en cultivos de tomate de la comunidad Valenciana, España. (incidence of tomato yellow leaf curl viruses in tomato crops of community of Valencia, Spain). Bol. San. Veg. Plagas 28 (2002) 599-607
40. Rybicki E.P., Briddon R.W., Brown J.K., Fauquet C.M., Maxwell D.P., Harrison B.D., Markham P.G., Bisaro D.M., Robinson D., and Stantely J. Family geminiviridae. In: Van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., and Wickner R.B. (Eds). Virus Taxonomy: VIIth Report of the International Committee on Taxonomy of Viruses (2000), Academic Press, San Diego 285-297
41. Sánchez-Campos S., Navas-Castillo J., Camero R., Soria C., Díaz J.A., and Moriones E. Displacement of tomato yellow leaf curl virus (TYLCV)-Sr by TYLCV-Is in tomato epidemics in Spain. Phytopathology 89 (1999) 1038-1043
42. Sánchez-Campos S., Díaz J.A., Monci F., Bejarano E.R., Reina J., Navas-Castillo J., Aranda M.A., and Moriones E. High genetic stability of the begomovirus Tomato yellow leaf curl Sardinia virus in southern Spain over an 8-year period. Phytopathology 92 (2002) 842-849
43. Sanz A.I., Fraile A., Garcia-Arenal F., Zhou X.P., Robinson D.J., Khalid S., Butt T., and Harrison B.D. Multiple infection, recombination and genome relationships among begomovirus isolates found in cotton and other plants in Pakistan. J. Gen. Virol. 81 (2000) 1839-1849
44. Stanley J., Bisaro D.M., Briddon R.W., Brown J.K., Fauquet C.M., Harrison B.D., Rybicki E.P., and Stenger D.C. Geminiviridae. In: Ball L.A. (Ed). Virus Taxonomy: VIIIth Report of the International Committee on Taxonomy of Viruses (2005), Elsiever/Academic Press, London 301-326
45. Sunter G., Hartitz M.O., Hormouzdi S.G., Brough C.L., and Bisaro D.M. Genetic analysis of Tomato golden mosaic virus: ORF AL2 is required for coat protein accumulation while ORF AL3 is necessary for efficient DNA replication. Virology 179 (1990) 69-77
46. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
47. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
48. Wartig L., Kheyr-Pour A., Noris E., Kouchkousky F., de Jouanneau F., Gronenborn B., and Jupin I. Genetic analysis of the monopartite tomato yellow leaf curl geminivirus: roles of V1, V2, and C2 ORFs in viral pathogenesis. Virology 228 (1997) 132-140
49. Weiller G.F. Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol. Biol. Evol. 15 (1998) 326-335