메뉴 건너뛰기




Volumn 6, Issue 9, 2007, Pages 1371-1379

Gene-specific nucleotide excision repair is impaired in human cells expressing elevated levels of high mobility group A1 nonhistone proteins

Author keywords

Cyclobutane pyrimidine dimer (CPD); DNA repair; High mobility group A1; Nucleotide excision repair (NER); Quantitative polymerase chain reaction (QPCR); Transcription coupled repair (TCR)

Indexed keywords

BETA GLOBIN; HIGH MOBILITY GROUP A PROTEIN;

EID: 34547781223     PISSN: 15687864     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dnarep.2007.04.003     Document Type: Article
Times cited : (18)

References (43)
  • 3
    • 0030026306 scopus 로고    scopus 로고
    • Repair and processing of DNA damage: a summary of recent progress
    • Sancar G.B., Siede W., and van Zeeland A.A. Repair and processing of DNA damage: a summary of recent progress. Mutat. Res. 362 (1996) 127-146
    • (1996) Mutat. Res. , vol.362 , pp. 127-146
    • Sancar, G.B.1    Siede, W.2    van Zeeland, A.A.3
  • 4
    • 25444533582 scopus 로고    scopus 로고
    • Inhibition of nucleotide excision repair by high mobility group protein HMGA1
    • Adair J.E., Kwon Y., Dement G.A., Smerdon M.J., and Reeves R. Inhibition of nucleotide excision repair by high mobility group protein HMGA1. J. Biol. Chem. 280 (2005) 32184-32192
    • (2005) J. Biol. Chem. , vol.280 , pp. 32184-32192
    • Adair, J.E.1    Kwon, Y.2    Dement, G.A.3    Smerdon, M.J.4    Reeves, R.5
  • 6
    • 0033664720 scopus 로고    scopus 로고
    • Structure and function of the HMGI(Y) family of architectural transcription factors
    • Reeves R. Structure and function of the HMGI(Y) family of architectural transcription factors. Environ. Health. Perspect. 108 Suppl. 5 (2000) 803-809
    • (2000) Environ. Health. Perspect. , vol.108 , Issue.SUPPL. 5 , pp. 803-809
    • Reeves, R.1
  • 7
    • 33744721699 scopus 로고    scopus 로고
    • Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells
    • Santos J.H., Meyer J.N., Mandavilli B.S., and Van Houten B. Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells. Methods Mol. Biol. 314 (2006) 183-199
    • (2006) Methods Mol. Biol. , vol.314 , pp. 183-199
    • Santos, J.H.1    Meyer, J.N.2    Mandavilli, B.S.3    Van Houten, B.4
  • 8
    • 0023936497 scopus 로고    scopus 로고
    • Comparative study of DNase I sensitivity at the X-linked human HPRT locus
    • Lin D., and Chinault A.C. Comparative study of DNase I sensitivity at the X-linked human HPRT locus. Somat. Cell Mol. Genet. 14 (1998) 261-272
    • (1998) Somat. Cell Mol. Genet. , vol.14 , pp. 261-272
    • Lin, D.1    Chinault, A.C.2
  • 9
    • 0037980066 scopus 로고    scopus 로고
    • Role of the promoter in maintaining transcriptionally active chromatin structure and DNA methylation patterns in vivo
    • Kang S.H., Kiefer M.C., and Yang T.P. Role of the promoter in maintaining transcriptionally active chromatin structure and DNA methylation patterns in vivo. Mol. Cell Biol. 23 (2003) 4150-4161
    • (2003) Mol. Cell Biol. , vol.23 , pp. 4150-4161
    • Kang, S.H.1    Kiefer, M.C.2    Yang, T.P.3
  • 10
    • 33845429169 scopus 로고    scopus 로고
    • Stable expression of a heterologous gene introduced via gene targeting into the HPRT locus of human fibrosarcoma cells
    • Koyama Y., Banzai T., Sonezaki S., and Kusano K. Stable expression of a heterologous gene introduced via gene targeting into the HPRT locus of human fibrosarcoma cells. Biotechnol. Bioeng. 95 (2006) 1052-1060
    • (2006) Biotechnol. Bioeng. , vol.95 , pp. 1052-1060
    • Koyama, Y.1    Banzai, T.2    Sonezaki, S.3    Kusano, K.4
  • 11
    • 13844318521 scopus 로고    scopus 로고
    • Control of globin gene expression during development and erythroid differentiation
    • Stamatoyannopoulos G. Control of globin gene expression during development and erythroid differentiation. Exp. Hematol. 33 (2005) 259-271
    • (2005) Exp. Hematol. , vol.33 , pp. 259-271
    • Stamatoyannopoulos, G.1
  • 12
    • 0035962921 scopus 로고    scopus 로고
    • HMGI/Y proteins: flexible regulators of transcription and chromatin structure
    • Reeves R., and Beckerbauer L. HMGI/Y proteins: flexible regulators of transcription and chromatin structure. Biochim. Biophys. Acta 1519 (2001) 13-19
    • (2001) Biochim. Biophys. Acta , vol.1519 , pp. 13-19
    • Reeves, R.1    Beckerbauer, L.2
  • 13
    • 0035164289 scopus 로고    scopus 로고
    • The architectural transcription factor HMGI(Y) promotes tumor progression and mesenchymal transition of human epithelial cells
    • Reeves R., Edberg D., and Li Y. The architectural transcription factor HMGI(Y) promotes tumor progression and mesenchymal transition of human epithelial cells. Mol. Cell Biol. 21 (2001) 575-594
    • (2001) Mol. Cell Biol. , vol.21 , pp. 575-594
    • Reeves, R.1    Edberg, D.2    Li, Y.3
  • 14
    • 0033039345 scopus 로고    scopus 로고
    • Purification and assays for high mobility group HMG-I(Y) protein function
    • Reeves R., and Nissen M.S. Purification and assays for high mobility group HMG-I(Y) protein function. Methods Enzymol. 304 (1999) 155-188
    • (1999) Methods Enzymol. , vol.304 , pp. 155-188
    • Reeves, R.1    Nissen, M.S.2
  • 15
    • 0032504244 scopus 로고    scopus 로고
    • Nucleosome unfolding during DNA repair in normal and xeroderma pigmentosum (group C) human cells
    • Baxter B.K., and Smerdon M.J. Nucleosome unfolding during DNA repair in normal and xeroderma pigmentosum (group C) human cells. J. Biol. Chem. 273 (1998) 17517-17524
    • (1998) J. Biol. Chem. , vol.273 , pp. 17517-17524
    • Baxter, B.K.1    Smerdon, M.J.2
  • 16
    • 0018647036 scopus 로고
    • Distribution of repair-incorporated nucleotides and nucleosome rearrangement in the chromatin of normal and xeroderma pigmentosum human fibroblasts
    • Smerdon M.J., Kastan M.B., and Lieberman M.W. Distribution of repair-incorporated nucleotides and nucleosome rearrangement in the chromatin of normal and xeroderma pigmentosum human fibroblasts. Biochemistry 18 (1979) 3732-3739
    • (1979) Biochemistry , vol.18 , pp. 3732-3739
    • Smerdon, M.J.1    Kastan, M.B.2    Lieberman, M.W.3
  • 17
    • 0036355070 scopus 로고    scopus 로고
    • Measuring oxidative mtDNA damage and repair using quantitative PCR
    • Santos J.H., Mandavilli B.S., and Van Houten B. Measuring oxidative mtDNA damage and repair using quantitative PCR. Methods Mol. Biol. 197 (2002) 159-176
    • (2002) Methods Mol. Biol. , vol.197 , pp. 159-176
    • Santos, J.H.1    Mandavilli, B.S.2    Van Houten, B.3
  • 18
    • 12444250684 scopus 로고    scopus 로고
    • Damage formation and repair efficiency in the p53 gene of cell lines and blood lymphocytes assayed by multiplex long quantitative polymerase chain reaction
    • Wang Y.C., Lee P.J., Shih C.M., Chen H.Y., Lee C.C., Chang Y.Y., Hsu Y.T., Liang Y.J., Wang L.Y., Han W.H., and Wang Y.C. Damage formation and repair efficiency in the p53 gene of cell lines and blood lymphocytes assayed by multiplex long quantitative polymerase chain reaction. Anal. Biochem. 319 (2003) 206-215
    • (2003) Anal. Biochem. , vol.319 , pp. 206-215
    • Wang, Y.C.1    Lee, P.J.2    Shih, C.M.3    Chen, H.Y.4    Lee, C.C.5    Chang, Y.Y.6    Hsu, Y.T.7    Liang, Y.J.8    Wang, L.Y.9    Han, W.H.10    Wang, Y.C.11
  • 19
    • 0034713926 scopus 로고    scopus 로고
    • Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA
    • Van Houten B., Cheng S., and Chen Y. Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA. Mutat. Res. 460 (2000) 81-94
    • (2000) Mutat. Res. , vol.460 , pp. 81-94
    • Van Houten, B.1    Cheng, S.2    Chen, Y.3
  • 21
    • 0034732890 scopus 로고    scopus 로고
    • Genomic heterogeneity of nucleotide excision repair
    • Balajee A.S., and Bohr V.A. Genomic heterogeneity of nucleotide excision repair. Gene 250 (2000) 15-30
    • (2000) Gene , vol.250 , pp. 15-30
    • Balajee, A.S.1    Bohr, V.A.2
  • 22
    • 2942596544 scopus 로고    scopus 로고
    • Network of dynamic interactions between histone H1 and high-mobility group proteins in chromatin
    • Catez F., Yang H., Tracey K.J., Reeves R., Misteli T., and Bustin M. Network of dynamic interactions between histone H1 and high-mobility group proteins in chromatin. Mol. Cell. Biol. 24 (2004) 4321-4328
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 4321-4328
    • Catez, F.1    Yang, H.2    Tracey, K.J.3    Reeves, R.4    Misteli, T.5    Bustin, M.6
  • 23
    • 4444254840 scopus 로고    scopus 로고
    • Dynamic interaction of HMGA1a protein with chromatin
    • Harrer H., Luhrs H., Bustin M., Scheer U., and Hock R. Dynamic interaction of HMGA1a protein with chromatin. J. Cell Sci. 117 (2004) 3459-3471
    • (2004) J. Cell Sci. , vol.117 , pp. 3459-3471
    • Harrer, H.1    Luhrs, H.2    Bustin, M.3    Scheer, U.4    Hock, R.5
  • 24
    • 0027960988 scopus 로고
    • Analysis of repair of cyclobutane pyrimidine dimers and pyrimidine-6-4-pyrimidone photoproducts in transcriptionally active and inactive genes in Chinese hamster cells
    • Vreeswijk M.P.G., van Hoffen A., Westland B.E., Vrieling H., van Zeeland A.A., and Mullenders L.H. Analysis of repair of cyclobutane pyrimidine dimers and pyrimidine-6-4-pyrimidone photoproducts in transcriptionally active and inactive genes in Chinese hamster cells. J. Biol. Chem. 269 (1994) 31858-31863
    • (1994) J. Biol. Chem. , vol.269 , pp. 31858-31863
    • Vreeswijk, M.P.G.1    van Hoffen, A.2    Westland, B.E.3    Vrieling, H.4    van Zeeland, A.A.5    Mullenders, L.H.6
  • 25
    • 0030027286 scopus 로고    scopus 로고
    • Comparison of the rate of excision of major ultraviolet photoproducts in the strands of the HPRT gene of normal and xeroderma pigmentosum variant cells
    • Tung B.S., McGregor W.G., Wang Y.C., Maher V.M., and McCormick J.J. Comparison of the rate of excision of major ultraviolet photoproducts in the strands of the HPRT gene of normal and xeroderma pigmentosum variant cells. Mutat. Res. 362 (1996) 65-74
    • (1996) Mutat. Res. , vol.362 , pp. 65-74
    • Tung, B.S.1    McGregor, W.G.2    Wang, Y.C.3    Maher, V.M.4    McCormick, J.J.5
  • 26
    • 0021905437 scopus 로고
    • DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the gnome overall
    • Bohr V.A., Smith C.A., Okumoto D.S., and Hanawalt P.C. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the gnome overall. Cell 40 (1985) 359-369
    • (1985) Cell , vol.40 , pp. 359-369
    • Bohr, V.A.1    Smith, C.A.2    Okumoto, D.S.3    Hanawalt, P.C.4
  • 28
    • 0022881706 scopus 로고
    • Characterization of a DNA repair domain containing the dihydrofolate reductase gene in Chinese hamster ovary cells
    • Bohr V.A., Okumoto D.S., Ho L., and Hanawalt P.C. Characterization of a DNA repair domain containing the dihydrofolate reductase gene in Chinese hamster ovary cells. J. Biol. Chem. 261 (1986) 16666-16672
    • (1986) J. Biol. Chem. , vol.261 , pp. 16666-16672
    • Bohr, V.A.1    Okumoto, D.S.2    Ho, L.3    Hanawalt, P.C.4
  • 29
    • 0029915021 scopus 로고    scopus 로고
    • A modified quantitative polymerase chain reaction assay for measuring gene-specific repair of UV photoproducts in human cells
    • McCarthy M.J., Rosenblatt J.I., and Lloyd R.S. A modified quantitative polymerase chain reaction assay for measuring gene-specific repair of UV photoproducts in human cells. Mutat. Res. 363 (1996) 57-66
    • (1996) Mutat. Res. , vol.363 , pp. 57-66
    • McCarthy, M.J.1    Rosenblatt, J.I.2    Lloyd, R.S.3
  • 30
    • 0026710685 scopus 로고
    • Preferential repair and strand-specific repair of benzo[a]pyrene dio epoxide adducts in the HPRT gene of diploid human fibroblasts
    • Chen R.H., Maher V.M., Brouwer J., Van de Putte P., and McCormick J.J. Preferential repair and strand-specific repair of benzo[a]pyrene dio epoxide adducts in the HPRT gene of diploid human fibroblasts. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 5413-5417
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 5413-5417
    • Chen, R.H.1    Maher, V.M.2    Brouwer, J.3    Van de Putte, P.4    McCormick, J.J.5
  • 31
    • 0028940079 scopus 로고
    • Site-specific rates of excision repair of benzo[a]pyrene dio epoxide adducts in the hypoxanthine phosphoribosyltransferase gene of human fibroblasts: correlation with mutation spectra
    • Wei D., Maher V.M., and McCormick J.J. Site-specific rates of excision repair of benzo[a]pyrene dio epoxide adducts in the hypoxanthine phosphoribosyltransferase gene of human fibroblasts: correlation with mutation spectra. Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 2204-2208
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 2204-2208
    • Wei, D.1    Maher, V.M.2    McCormick, J.J.3
  • 32
    • 21844465656 scopus 로고    scopus 로고
    • Role of high mobility group (HMG) chromatin proteins in DNA repair
    • Reeves R., and Adair J.E. Role of high mobility group (HMG) chromatin proteins in DNA repair. DNA Repair (Amst.) 4 (2005) 926-938
    • (2005) DNA Repair (Amst.) , vol.4 , pp. 926-938
    • Reeves, R.1    Adair, J.E.2
  • 34
    • 0028822646 scopus 로고
    • Overexpression of the XPA repair gene increases resistance to ultraviolet radiation in human cells by selective repair of DNA damage
    • Cleaver J.E., Charles W.C., McDowell M.L., Sadinski W.J., and Mitchell D.L. Overexpression of the XPA repair gene increases resistance to ultraviolet radiation in human cells by selective repair of DNA damage. Cancer Res. 55 (1995) 6152-6160
    • (1995) Cancer Res. , vol.55 , pp. 6152-6160
    • Cleaver, J.E.1    Charles, W.C.2    McDowell, M.L.3    Sadinski, W.J.4    Mitchell, D.L.5
  • 35
    • 33646536553 scopus 로고    scopus 로고
    • XPA protein as a limiting factor nucleotide excision repair and UV sensitivity in human cells
    • Koberle B., Roginskaya V., and Wood R.D. XPA protein as a limiting factor nucleotide excision repair and UV sensitivity in human cells. DNA Repair (Amst.) 5 (2006) 641-648
    • (2006) DNA Repair (Amst.) , vol.5 , pp. 641-648
    • Koberle, B.1    Roginskaya, V.2    Wood, R.D.3
  • 36
    • 0029616260 scopus 로고
    • DNA repair fine structure and its relations to genomic instability
    • Bohr V.A. DNA repair fine structure and its relations to genomic instability. Carcinogen 16 (1995) 2885-2892
    • (1995) Carcinogen , vol.16 , pp. 2885-2892
    • Bohr, V.A.1
  • 37
    • 0036468915 scopus 로고    scopus 로고
    • High mobility group protein I(Y): a candidate architectural protein for chromosomal rearrangements in prostate cancer cells
    • Takaha N., Hawkins A.L., Griffin C.A., Isaacs W.B., and Coffey D.S. High mobility group protein I(Y): a candidate architectural protein for chromosomal rearrangements in prostate cancer cells. Cancer Res. 62 (2002) 647-651
    • (2002) Cancer Res. , vol.62 , pp. 647-651
    • Takaha, N.1    Hawkins, A.L.2    Griffin, C.A.3    Isaacs, W.B.4    Coffey, D.S.5
  • 38
    • 33846455463 scopus 로고    scopus 로고
    • Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas
    • Grade M., Hormann P., Becker S., et al. Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas. Cancer Res. 67 (2007) 41-56
    • (2007) Cancer Res. , vol.67 , pp. 41-56
    • Grade, M.1    Hormann, P.2    Becker, S.3
  • 39
    • 23044448902 scopus 로고    scopus 로고
    • High mobility group A2 potentiates genotoxic stress in part through the modulation of basal and DNA-damage-dependent phosphatidylinositol 3-kinase-related protein kinase activation
    • Boo L.M., Lin H.H., Chung V., Zhou B., et al. High mobility group A2 potentiates genotoxic stress in part through the modulation of basal and DNA-damage-dependent phosphatidylinositol 3-kinase-related protein kinase activation. Cancer Res. 65 (2005) 6622-6630
    • (2005) Cancer Res. , vol.65 , pp. 6622-6630
    • Boo, L.M.1    Lin, H.H.2    Chung, V.3    Zhou, B.4
  • 40
    • 0346250854 scopus 로고    scopus 로고
    • The transcriptome profile of human embryonic stem cells defined by SAGE
    • Richards M., Tan S.-P., Tan J.-H., Chan W.-K., and Bongso A. The transcriptome profile of human embryonic stem cells defined by SAGE. Stem Cells 22 (2004) 51-64
    • (2004) Stem Cells , vol.22 , pp. 51-64
    • Richards, M.1    Tan, S.-P.2    Tan, J.-H.3    Chan, W.-K.4    Bongso, A.5
  • 41
    • 33751571757 scopus 로고    scopus 로고
    • High-level expression of DNA architectural factor HMGA2 and its association with nucleosomes in human embryonic stem cells
    • Li O., Vasudenvan D., Davey C.A., and Droge P. High-level expression of DNA architectural factor HMGA2 and its association with nucleosomes in human embryonic stem cells. Genesis 44 (2006) 523-529
    • (2006) Genesis , vol.44 , pp. 523-529
    • Li, O.1    Vasudenvan, D.2    Davey, C.A.3    Droge, P.4
  • 42
    • 0032088139 scopus 로고    scopus 로고
    • HMGI family proteins: architectural transcription factors in mammalian development and cancer
    • Zhou X., and Chada K. HMGI family proteins: architectural transcription factors in mammalian development and cancer. Keio J. Med. 47 (1998) 73-77
    • (1998) Keio J. Med. , vol.47 , pp. 73-77
    • Zhou, X.1    Chada, K.2
  • 43
    • 0033566905 scopus 로고    scopus 로고
    • The role of nucleotide excision repair in protecting embryonic stem cells from genotoxic effects of UV-induced DNA damage
    • Van Sloun P.P., Jansen J.G., Weeda G., Mullenders L.H., et al. The role of nucleotide excision repair in protecting embryonic stem cells from genotoxic effects of UV-induced DNA damage. Nucleic Acids Res. 27 (1999) 3276-3282
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3276-3282
    • Van Sloun, P.P.1    Jansen, J.G.2    Weeda, G.3    Mullenders, L.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.