Molecular phylogeny of grey mullets (Teleostei: Mugilidae) in Greece: Evidence from sequence analysis of mtDNA segments

Biochemical Genetics

Volumn 45, Issue 7-8, 2007, Pages 623-636

  Papasotiropoulos, Vasilis ^a,b   Klossa Kilia, Elena ^a   Alahiotis, Stamatis N ^a   Kilias, George ^a  

^a UNIVERSITY OF PATRAS   (Greece)

^b TECHNOLOGICAL EDUCATIONAL INSTITUTE OF PATRAS   (Greece)

Author keywords

Grey mullets; Mitochondrial DNA; Mugilidae family; Phylogeny; Sequencing

Indexed keywords

DNA; RIBOSOME RNA; RNA 12S; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BAYES THEOREM; CONTROLLED STUDY; DNA DETERMINATION; DNA ISOLATION; FISH GENETICS; GREECE; GREY MULLET; LAGOON; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SPECIES COMPARISON; TAXONOMY; TELEOST;

ANIMALS; DNA, MITOCHONDRIAL; GREECE; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SMEGMAMORPHA; VARIATION (GENETICS);

CHELON LABROSUS; LIZA; LIZA AURATA; LIZA RAMADA; LIZA SALIENS; MUGIL CEPHALUS; MUGILIDAE; TELEOSTEI;

EID: 34547701724     PISSN: 00062928     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10528-007-9101-2     Document Type: Article

References (58)

1. Adachi J, Ying C, Hasegawa M (1993) Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: rapid evolution in warm blooded vertebrates. J Mol Evol 36:270-281
2. Akaike H (1974) A new look at the statistical model identification. IEEE Trans Autom Contr 19: 716-723
3. Autem M, Bonhomme F (1980) Elements de systématique biochimique chez les mugilidés de Méditerranée. Biochem Syst Ecol 8:305-308
4. Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reeb CA, Saunders SC (1987) Intraspecific phylogeography: the mitochondrial bridge between population genetics and systematics. Annu Rev Ecol Syst 18:489-522
5. Billington N, Hebert P (1991) Mitochondrial DNA diversity in fishes and its implications for introductions. Can J Fish Aqua Sci 48:80-94
6. Brown WM, Prager EM, Wang A, Wilson AC (1982) Mitochondrial DNA sequences of primates: tempo and mode of evolution. J Mol Evol 18:225-239
7. Caldara F, Bargelloni L, Ostellari L, Penzo E, Colombo L, Patarnello T (1996) Molecular phylogeny of grey mullets based on mitochondrial DNA sequence analysis: Evidence of differential rate of evolution at the intrafamily level. Mol Phylogenet Evol 6:416-424
8. Cataudella S, Civitelli MV, Capanna E (1974) Chromosome complement of the Mediterranean mullets (Pisces, perciformes). Caryologia 27:93-105
9. Delgado JV, Molina A, Lobillo J, Alonso A, Camacho ME (1992) Morphometrical study on the chromosomes of three species of mullet (Teleostei: Mugilidae). Caryologia 45:263-271
10. Farris JS, Källersjö M, Kluge AG, Bult C (1995) Constructing a significance test for incongruence. Syst Biol 44:570-572
11. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
12. Funk DJ, Futuyma DJ, Orti G, Meyer A (1995) Mitochondrial DNA sequences and multiple data sets: A phylogenetic study of phytophagous beetles (Chrysomelidae: Ophraella). Mol Biol Evol 12(4):627-640
13. Gonzalez-Villasenor LI, Powers DA (1990) Mitochondrial restriction-site polymorphisms in the teleost Fundulus heteroclitus support secondary integration. Evolution 44:27-37
14. Gornung E, Cordisco CA, Rossi AR, De Innocentiis S, Crosetti D, Sola L (2001) Chromosomal evolution in mugilids: karyotype characterization of Liza saliens and comparative localization of major and minor ribosomal genes in the six Mediterranean grey mullets. Mar Biol 139:55-60
15. Gornung E, Mannarelli ME, Rossi AR, Sola L (2004) Chromosomal evolution in Mugilidae (Pisces, Mugiliformes): FISH mapping of the (TTAGGG)n telomeric repeat in the six Mediterranean mullets. Hereditas 140:158-159
16. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
17. Harrison IJ, Howes GJ (1991) The pharyngobranchial organ of mugilid fishes: its structure, variability, ontogeny, possible function and taxonomic utility. Bull Br Mus Nat Hist (Zool) 57:111-132
18. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192
19. Irwin DM, Kocher TD, Wilson AC (1991) Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128-144
20. Kaya M, Mater S, Korkut AY (1998) A new grey mullet species ''Mugil soiuy Vasilewsky'' (Teleostei: Mugilidae) from the Aegean coast of Turkey. Turk J Zool 22:303-306
21. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
22. Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC (1989) Dynamics of mitochondrial DNA sequence evolution in animals. Proc Natl Acad Sci USA 86:6196-6200
23. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
24. Lydeard C, Mulvey M, Davis GM (1996) Molecular systematics and evolution of reproductive traits of north American freshwater unionacean mussels (Mollusca: Bivalvia) as inferred from 16s rRNA gene sequences. Phil Trans R Soc Lond 351:1593-1603
25. Martin AW (1995) Mitochondrial DNA sequence evolution in sharks: rates, patterns, and phylogenetic inferences. Mol Biol Evol 12:1114-1123
26. Meyer A, Kocher TD, Basasibwaki P, Wilson AC (1990) Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature 347:550-553
27. Moritz C, Dowling TE, Brown WM (1987) Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Ann Rev Ecol Syst 18:269-292
28. Murgia R, Tola G, Archer SN, Vallerga S, Hirano J (2002) Genetic identification of grey mullet species (Mugilidae) by analysis of mitochondrial DNA sequence: Application to identify the origin of processed ovary products (Bottarga). Mar Biol 4:119-126
29. Nelson JS (1994) Fishes of the world. Wiley, New York
30. Nirchio M, Cervigón F, Porto JIR, Pérez JE, Gómez JA, Villalaz J (2003) Karyotype supporting Mugil curema Valenciennes, 1836, and Mugil gaimardianus Desmarest, 1831 (Mugilidae: Teleostei), as two valid nominal species. Sci Mar 67(1):113-115
31. Normark BB, McCune AR, Harrison RC (1991) Phylogenetic relationships of neopterygian fish, inferred from mitochondrial DNA sequences. Mol Biol Evol 8:819-834
32. Ohno S (1974) Protochordota, Cyclostomata and Pisces. In: John B (ed) Animal cytogenetics, vol 4 Gebruder Borntraeger, Berlin
33. Palumbi S, Martin A, Romano S, McMillan WO, Stice L, Grabowski G (1991) The simple fools guide to PCR, version 2. University of Hawaii, Honolulu
34. Papasotiropoulos V, Klossa-Kilia E, Kilias G, Alahiotis SN (2001) Genetic divergence and phylogenetic relationships in grey Mullets (Teleostei: Mugilidae) using allozyme data. Biochem Genet 39(5/6):155-167
35. Papasotiropoulos V, Klossa-Kilia E, Kilias G, Alahiotis SN (2002) Genetic divergence and phylogenetic relationships in grey mullets (Teleostei: Mugilidae) based on PCR-RFLP analysis of mtDNA segments. Biochem Genet 40:71-86
36. Patterson C, Williams DM, Humphries CJ (1993) Congruence between molecular and morphological phylogenies. Annu Rev Ecol Syst 24:153-188
37. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
38. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
39. Rossi AR, Crosetti D, Gornung E, Sola L (1996) Cytogenetic analysis of global populations of Mugil cephalus (striped mullet) by different staining techniques and fluorescent in situ hybridization. Heredity 76:77-82
40. Rossi AR, Gornung E, Crosetti D (1997) Cytogenetic analysis of Liza ramada (Pisces, Perciformes) by different staining techniques and fluorescent in situ hybridization. Heredity 79:83-87
41. Rossi AR, Capula M, Crosetti D, Campton DE, Sola L (1998) Genetic divergence and phylogenetic inferences in five species of Mugilidae (Pisces: Perciformes). Mar Biol 131:213-218
42. Rossi AR, Gornung E, Crosetti D, DeInnocentiis S, Sola L (2000) Cytogenetic analysis of Oedalechilus labeo (Pisces: Mugilidae), with report of NOR variability. Mar Biol 136:159-162
43. Rossi AR, Ungaro A, De Innocentiis S, Crosetti D, Sola L (2004) Phylogenetic analysis of Mediterranean mugilids by allozymes and 16S mt rRNA genes investigation: Are the Mediterranean species of Liza monophyletic? Biochem Genet 42:301-313
44. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
45. Schultz LP (1946) A revision of the genera of mullets, fishes of the family Mugilidae with description of three new genera. Proc US Nat Mus 96:377-395
46. Senou H, Randall JE, Okiyama M (1996) Chelon persicus, a new species of mullets (Perciformes: Mugilidae) from the persian Gulf. Bull Kanagawa Prefecture Mus Nat Sci 25:71-78
47. Smith PT, Kambhampati S, Armstrong KA (2003) Phylogenetic relationships among Bactrocera species (Diptera: Tephritidae) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol 26:8-17
48. Stepien CA, Kocher TD, (1997) Chapter I Molecules and morphology in studies of fish evolution. In: Kocher TD, Stepien CA (eds) Molecular systematics of fishes. Academic Press, San Diego
49. Stiassny MLJ (1993) What are grey mullets? Bull Mar Sci 52:197-219
50. Sueoka N (1988) Directional mutation pressure and neutral molecular evolution. Proc Natl Acad Sci USA 85:2653-2657
51. Swofford DL (2002) PAUP: phylogenetic analysis using parsimony (and other methods), Ver. 4.0b10a. (Computer software and manual). Sinauer Associates, Sunderland, MA
52. Thomson JM (1981) The taxonomy of grey mullets. In: Oren OH (ed) Aquaculture of grey mullets. Cambridge University Press, Cambridge, pp 1-16
53. Thomson JM (1997) The Mugilidae of the world. Mem Queensland Mus 41(3):457-562
54. Thomson JD, Higgins DG, Gibson TJ (1994) Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
55. Tortonese, E. 1975. Osteichthyes (Pesci Ossei). In: Calderini E (ed) Fauna d' Italia, vol 11. Bologna, pp 11-26
56. Trewavas E, Ingham SE (1972) A key to species of Mugilidae in the northeastern Atlantic and Mediterranean, with explanatory notes. J Zool Lond 167:15-29
57. Turan C, Caliskan M, Kucuktas H (2005) Phylogenetic relationships of nine mullet species (Mugilidae) in the Mediterranean Sea. Hydrobiologia 532:45-51
58. Yalcin-Ozdilek S (2004) Occurunce of the abu mullet, Liza abu (Heckel, 1843) (Pisces, Mugilidae), in Orontes River. Zool Mid East 30:111-113