Polyamines: Metabolism to systems biology and beyond

Amino Acids

Volumn 33, Issue 2, 2007, Pages 283-289

  Montanez R ^a   Sanchez Jimenez F ^a   Aldana Montes, J F ^a   Medina, M A ^a  

^a UNIVERSITY OF MÁLAGA   (Spain)

Author keywords

Functional genomics; Metabolomics; Polyamines; Proteomics; Sematic web; Systems biology

Indexed keywords

POLYAMINE DERIVATIVE;

BIOLOGY; GENOME; MEDICAL RESEARCH; METABOLISM; METABOLOMICS; NONHUMAN; PATHOPHYSIOLOGY; PRIORITY JOURNAL; SHORT SURVEY;

ANIMALS; GENOMICS; HUMANS; POLYAMINES; SYSTEMS BIOLOGY;

EID: 34547686704     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-007-0521-4     Document Type: Short Survey

References (48)

1. L Alberghina F Chiaradonna M Vanoni 2004 Systems biology and the molecular circuits of cancer Chembiochemistry 5 1322 1333
2. U Bachrach 2004 Polyamines and cancer Amino Acids 26 307 309
3. RJ Bergeron GW Yao H Yao WR Weimar CA Sninsky B Raisler Y Feng Q Wu F Gao 1996 Metabolically programmed polyamine analogue antidiarrheals J Med Chem 39 2461 2471
4. S Bienz P Bisegger A Guggisberg M Hesse 2005 Polyamine alkaloids Nat Prod Rep 22 647 658
5. C Binda A Mattevi DE Edmondson 2002 Structure-function relationships in flavoenzyme-dependent amine oxidations: a comparison of polyamine oxidase and monoamine oxidase J Biol Chem 277 23973 23976
6. Chaves P, Correa-Fiz AMF, Melgarejo E, Urdiales JL, Medina MA, Sánchez-Jiménez F (2007) Development of an expression macroarray for amine metabolism-related genes. Amino Acids (in press)
7. KS Choi YH Suh WH Kim TH Lee MH Jung 2005 Stable siRNA-mediated silencing of antizyme inhibitor: regulation of ornithine decarboxylase activity Biochem Biophys Res Commun 328 206 212
8. SS Cohen 1998 A guide to polyamines Oxford University Press New York
9. L D'Agostino M di Pietro A di Luccia 2006 Nuclear aggregates of polyamines IUBMB Life 58 75 82
10. Editorial (1999) Consilience, complexity and communication: three challanges at the start of the new century. BioEssays 21: 983-984
11. S Ekins Y Nikolsky T Nikolskaya 2005 Techniques: Application of systems biology to absorption, distribution, metabolism, excretion and toxicity Trends Pharmacol Sci 26 202 209
12. M Franceschetti B Perry B Thompson C Hanfrey AJ Michael 2004 Expression proteomics identifies biochemical adaptations and defense responses in transgenic plants with perturbed polyamine metabolism FEBS Lett 576 477 480
13. EW Gerner FL Meyskens Jr 2004 Polyamines and cancer: old molecules, new understanding Nat Rev Cancer 4 781 792
14. K Hamana S Matsuzaki 1992 Polyamines as a chomotaxonomic marker in bacterial systematics Crit Rev Microbiol 18 261 283
15. LH Hartwell JJ Hopfield S Leibler AW Murray 1999 From molecular to modular cell biology Nature 402 C47 C52
16. J Jänne L Alhonen TA Keinanen M pietila A Uimari E Pirinen MT Hyvonen A Jarvinen 2005 Animal disease models generated by genetic engineering of polyamine metabolism J Cell Mol Med 9 865 882
17. M Jeevanandam SR Petersen 2001 Clinical role of polyamine analysis: problem and promise Curr Opin Clin Nutr Metab Care 4 385 390
18. H Kitano 2001 Foundations of systems biology MIT Press London
19. H Kitano 2002a Computational systems biology Nature 420 206 210
20. H Kitano 2002b Systems biology: a brief overview Science 295 1662 1664
21. S Kubota 1999 Polyamine and ODC Nippon Rinsho 57 570 574
22. F Liang S Wan Z Li X Xiong L Yang X Zhou C Wu 2006 Medical applications of macrocyclic polyamines Curr Med Chem 13 711 727
23. AJ López-Contreras C López-García C Jimménez-Cervantes A Cremades R Peñafiel 2006 Mouse ornithine decarboxylase-like gene encodes an antizyme inhibitor devoid of ornithine and arginine decarboxylase activity J Biol Chem 281 30896 30906
24. U Mangold 2005 The antizyme family: polyamines and beyond IUBMB Life 57 671 676
25. Medina MA, Aldana JF, Villatoro FR, Claros G, Urdiales JL, Trelles O, Sánchez-Jiménez F (2007) Amine system project. Inflamm Res (in press)
26. MA Medina F Correa-Fiz C Rodríguez-Caso F Sánchez- Jiménez 2005 A comprehensive view of polyamine and histamine metabolism to the light of new technologies J Cell Mol Med 9 854 864
27. MA Medina JL Urdiales C Rodríguez-Caso FJ Ramírez F Sánchez-Jiménez 2003 Biogenic amines and polyamines: similar biochemistry for different physiological missions and biomedical applications Crit Rev Biochem Mol Biol 38 23 59
28. C Moinard L Cynober JP de Bandt 2005 Polyamines: metabolism and implications in human diseases Clin Nutr 24 184 197
29. Montañez R, Rodríguez-Caso C, Sánchez-Jiménez F, Medina MA (2007) In silico analysis of arginine catabolism as a source of nitric oxide or polyamines in endothelial cells. Amino Acids (in press)
30. AJ Parr FA Mellon IJ Colquhoun HV Davies 2005 Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling J Agric Food Chem 53 5461 5466
31. AE Pegg 2006 Regulation of ornithine decarboxylase J Biol Chem 281 14529 14532
32. AE Pegg DJ Feith LY Fong CS Coleman TG O'Brien LM Shantz 2003 Transgenic mouse models for studies of the role of polyamines in normal, hypertrophic and neoplastic growth Biochem Soc Trans 31 356 360
33. AE Pegg H Xiong DJ Feith LM Shantz 1998 S-adenosymethionine decarboxilase: structure, function and regulation by polyamines Biochem Soc Trans 26 580 586
34. E Pessione R Mazzoli MG Giuffrida C Lamberti E García-Moruno C Barello A Conti C Giunta 2005 A proteomic approach to studying biogenic amine producing lactic acid bacteria Proteomics 5 687 698
35. RM Reguera BL Tekwani R Balana-Fouce 2005 Polyamine transport in parasites: a potential target for new antiparasitic drug development Comp Biochem Physiol C: Toxicol Pharmacol 140 151 164
36. C Rodríguez-Caso MA Medina RV Solé 2005 Topology, tinkering and evolution of the human transcription factor network FEBS J 272 6423 6434
37. C Rodríguez-Caso R Montañez M Cascante F Sánchez-Jiménez MA Medina 2006 Mathematical modeling of polyamine metabolism in mammals J Biol Chem 281 21799 21812
38. K Samejima 2006 Regulation of polyamine and cancer Yakugaku Zasshi 126 529 542
39. Sánchez-Jimenez F, Montañez R, Correa-Fiz F, Chaves P, Rodríguez-Caso R, Urdiales JL, Aldana JF, Medina MA (2007) The usefulness of post-genomics tools for characterization of the amine crosstalk in mammalian cells. Biochem Soc Trans (in press)
40. J Satriano 2004 Arginine pathways and the inflammatory response: interregulation of nitric oxide and polyamines Amino Acids 26 321 329
41. N Seiler 2004 Catabolism of polyamines Amino Acids 26 217 233
42. N Seiler 2005 Pharmacological aspects of cytotoxic polyamine analogs and derivates for cancer therapy Pharmacol Ther 107 99 109
43. H Tabor CW Tabor 1983 Polyamines Methods in Ezymology 94 Academic Press New York
44. T Thomas TH Thomas 2001 Polyamines in cell growth and cell death: molecular mechanisms and therapeutic applications Cell Mol Life Sci 58 244 258
45. HM Wallace AV Fraser A Hughes 2003 A perspective of polyamine metabolism Biochem J 376 1 14
46. AD Weston L Hood 2004 Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine J Proteome Res 3 179 196
47. G Wu CJ Meininger 2000 Arginine nutrition and cardiovascular function J Nutr 130 2626 2629
48. CR Yang BE Shapiro ED Mjolsness GW Hatfield 2005 An enzyme mechanism language for the mathematical modeling of metabolic pathways Bioinformatics 21 774 780