HobA - A novel protein involved in initiation of chromosomal replication in Helicobacter pylori

Molecular Microbiology

Volumn 65, Issue 4, 2007, Pages 979-994

  Zawilak Pawlik, Anna ^a,b   Kois, Agnieszka ^b   Stingl, Kerstin ^a,d   Boneca, Ivo G ^a   Skrobuk, Paulina ^b   Piotr, Jakimowicz ^b   Lurz, Rudi ^c   Zakrzewska Czerwińska, Jolanta ^b   Labigne, Agnés ^a  

^a INSTITUT PASTEUR   (France)

^b INSTITUTE OF IMMUNOLOGY AND EXPERIMENTAL THERAPY   (Poland)

^c MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^d UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA A; PROTEIN; PROTEIN HOBA; UNCLASSIFIED DRUG;

ARTICLE; CHROMOSOME REPLICATION; CONTROLLED STUDY; GROWTH INHIBITION; HELICOBACTER PYLORI; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INTERACTION;

BACTERIAL PROTEINS; BASE SEQUENCE; CHROMOSOMES, BACTERIAL; CONSERVED SEQUENCE; DNA REPLICATION; DNA, BACTERIAL; DNA-BINDING PROTEINS; FLOW CYTOMETRY; GENES, ESSENTIAL; HELICOBACTER PYLORI; PROTEIN BINDING; PROTEIN STRUCTURE, QUATERNARY; REPLICATION ORIGIN;

BACTERIA (MICROORGANISMS); EPSILONPROTEOBACTERIA; HELICOBACTER PYLORI;

EID: 34547683989     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2007.05853.x     Document Type: Article

References (51)

1. Alm, R.A., Ling, L.S., Moir, D.T., King, B.L., Brown, E.D., Doig, P.C., et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397 : 176 180.
2. Atherton, J.C. (2006) The pathogenesis of Helicobacter pylori induced gastro-duodenal diseases. Annu Rev Pathol Mech Dis 1 : 63 96.
3. Benaissa, M., Babin, P., Quellard, N., Pezennec, L., Cenatiempo, Y. Fauchere, J.L. (1996) Changes in Helicobacter pylori ultrastructure and antigens during conversion from the bacillary to the coccoid form. Infect Immun 64 : 2331 2335.
4. Boye, E., Lobner-Olesen, A. Skarstad, K. (2000) Limiting DNA replication to once and only once. EMBO Rep 1 : 479 483.
5. Bradford, M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72 : 248 254.
6. Casadaban, M.J. Cohen, S.N. (1980) Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J Mol Biol 138 : 179 207.
7. Cassler, M.R., Grimwade, J.E. Leonard, A.C. (1995) Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin. EMBO J 14 : 5833 5841.
8. Chevalier, C., Thiberge, J.M., Ferrero, R.L. Labigne, A. (1999) Essential role of Helicobacter pylori gamma-glutamyltranspeptidase for the colonization of the gastric mucosa of mice. Mol Microbiol 31 : 1359 1372.
9. Colland, F., Rain, J.C., Gounon, P., Labigne, A., Legrain, P. De Reuse, H. (2001) Identification of the Helicobacter pylori anti-sigma28 factor. Mol Microbiol 41 : 477 487.
10. Contreras, M., Thiberge, J.M., Mandrand-Berthelot, M.A. Labigne, A. (2003) Characterization of the roles of NikR, a nickel-responsive pleiotropic autoregulator of Helicobacter pylori. Mol Microbiol 49 : 947 963.
11. Davey, M.J., Jeruzalmi, D., Kuriyan, J. O'Donnell, M. (2002) Motors and switches: AAA+ machines within the replisome. Nat Rev Mol Cell Biol 3 : 826 835.
12. Daxhelet, G.A., Coene, M.M., Hoet, P.P. Cocito, C.G. (1989) Spectrofluorometry of dyes with DNAs of different base composition and conformation. Anal Biochem 179 : 401 403.
13. Derbise, A., Lesic, B., Dacheux, D., Ghigo, J.M. Carniel, E. (2003) A rapid and simple method for inactivating chromosomal genes in Yersinia. FEMS Immunol Med Microbiol 38 : 113 116.
14. Erzberger, J.P., Mott, M.L. Berger, J.M. (2006) Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling. Nat Struct Mol Biol 13 : 676 683.
15. Ferrero, R.L., Cussac, V., Courcoux, P. Labigne, A. (1992) Construction of isogenic urease-negative mutants of Helicobacter pylori by allelic exchange. J Bacteriol 174 : 4212 4217.
16. Fol, M., Chauhan, A., Nair, N.K., Maloney, E., Moomey, M., Jagannath, C., et al. (2006) Modulation of Mycobacterium tuberculosis proliferation by MtrA, an essential two-component response regulator. Mol Microbiol 60 : 643 657.
17. Gressmann, H., Linz, B., Ghai, R., Pleissner, K.P., Schlapbach, R., Yamaoka, Y., et al. (2005) Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet. 1 : e43.
18. Harlow, E. Lane, D. (1988) Antibodies: A Laboratory Manual. New York, NY : Cold Spring Harbor Laboratory Press.
19. Harper, J.W., Adami, G.R., Wei, N., Keyomarsi, K. Elledge, S.J. (1993) The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases. Cell 75 : 805 816.
20. Ishida, T., Akimitsu, N., Kashioka, T., Hatano, M., Kubota, T., Ogata, Y., et al. (2004) DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication. J Biol Chem 279 : 45546 45555.
21. Kaguni, J.M. (2006) DnaA: controlling the initiation of bacterial DNA replication and more. Annu Rev Microbiol 60 : 351 375. doi: 10.1146/annurev. micro.60.080805.142111.
22. Kato, J. (2005) Regulatory network of the initiation of chromosomal replication in Escherichia coli. Crit Rev Biochem Mol Biol 40 : 331 342.
23. Kusters, J.G., Gerrits, M.M., Van Strijp, J.A. Vandenbroucke-Grauls, C.M. (1997) Coccoid forms of Helicobacter pylori are the morphologic manifestation of cell death. Infect Immun 65 : 3672 3679.
24. Labarca, C. Paigen, K. (1980) A simple, rapid, and sensitive DNA assay procedure. Anal Biochem 102 : 344 352.
25. Leonard, A.C. Grimwade, J.E. (2005) Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding. Mol Microbiol 55 : 978 985.
26. Marczynski, G.T. Shapiro, L. (2002) Control of chromosome replication in Caulobacter crescentus. Annu Rev Microbiol 56 : 625 656.
27. Messer, W. (2002) The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication. FEMS Microbiol Rev 26 : 355 374.
28. Moriya, S., Imai, Y., Hassan, A.K. Ogasawara, N. (1999) Regulation of initiation of Bacillus subtilis chromosome replication. Plasmid 41 : 17 29.
29. Neuwald, A.F., Aravind, L., Spouge, J.L. Koonin, E.V. (1999) AAA+: a class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 9 : 27 43.
30. Noirot-Gros, M.F., Velten, M., Yoshimura, M., McGovern, S., Morimoto, T., Ehrlich, S.D., et al. (2006) Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus subtilis. Proc Natl Acad Sci USA 103 : 2368 2373.
31. Oh, J.D., Kling-Backhed, H., Giannakis, M., Xu, J., Fulton, R.S., Fulton, L.A., et al. (2006) The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression. Proc Natl Acad Sci USA 103 : 9999 10004.
32. Rain, J.C., Selig, L., De Reuse, H., Battaglia, V., Reverdy, C., Simon, S., et al. (2001) The protein-protein interaction map of Helicobacter pylori. Nature 409 : 211 215.
33. Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M. Seraphin, B. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17 : 1030 1032.
34. Sambrook, J.F., Fritsch, E.F. Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, New York, NY : Cold Spring Harbor Laboratory Press.
35. Seitz, H., Weigel, C. Messer, W. (2000) The interaction domains of the DnaA and DnaB replication proteins of Escherichia coli. Mol Microbiol 37 : 1270 1279.
36. Sekimizu, K., Bramhill, D. Kornberg, A. (1987) ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome. Cell 50 : 259 265.
37. Skarstad, K., Boye, E. Steen, H.B. (1986) Timing of initiation of chromosome replication in individual Escherichia coli cells. EMBO J 5 : 1711 1717.
38. Skouloubris, S., Thiberge, J.M., Labigne, A. De Reuse, H. (1998) The Helicobacter pylori UreI protein is not involved in urease activity but is essential for bacterial survival in vivo. Infect Immun 66 : 4517 4521.
39. Smulczyk-Krawczyszyn, A., Jakimowicz, D., Ruban-Osmialowska, B., Zawilak-Pawlik, A., Majka, J., Chater, K. Zakrzewska-Czerwinska, J. (2006) A cluster of DnaA boxes involved in the regulation of Streptomyces chromosome replication: from in silico to in vivo studies. J Bacteriol 188 : 6184 6194.
40. Soni, R.K., Mehra, P., Choudhury, N.R., Mukhopadhyay, G. Dhar, S.K. (2003) Functional characterization of Helicobacter pylori DnaB helicase. Nucleic Acids Res 31 : 6828 6840.
41. Soni, R., Mehra, P., Mukhopadhyay, G. Kumar Dhar, S. (2005) Helicobacter pylori DnaB helicase can bypass Escherichia coli DnaC function in vivo. Biochem J 389 : 541 548.
42. Su'etsugu, M., Shimuta, T.R., Ishida, T., Kawakami, H. Katayama, T. (2005) Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex. J Biol Chem 280 : 6528 6536.
43. Terradot, L., Durnell, N., Li, M., Li, D., Ory, J., Labigne, A., et al. (2004) Biochemical characterization of protein complexes from the Helicobacter pylori protein interaction map: strategies for complex formation and evidence for novel interactions within type IV secretion systems. Mol Cell Proteomics 3 : 809 819.
44. Tomb, J.F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G., Fleischmann, R.D., et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388 : 539 547.
45. Torheim, N.K., Boye, E., Lobner-Olesen, A., Stokke, T. Skarstad, K. (2000) The Escherichia coli SeqA protein destabilizes mutant DnaA204 protein. Mol Microbiol 37 : 629 638.
46. Weigel, C., Schmidt, A., Ruckert, B., Lurz, R. Messer, W. (1997) DnaA protein binding to individual DnaA boxes in the Escherichia coli replication origin, oriC. EMBO J 16 : 6574 6583.
47. Weigel, C., Schmidt, A., Seitz, H., Tungler, D., Welzeck, M. Messer, W. (1999) The N-terminus promotes oligomerization of the Escherichia coli initiator protein DnaA. Mol Microbiol 34 : 53 66.
48. Zawilak, A., Cebrat, S., Mackiewicz, P., Krol-Hulewicz, A., Jakimowicz, D., Messer, W., et al. (2001) Identification of a putative chromosomal replication origin from Helicobacter pylori and its interaction with the initiator protein DnaA. Nucleic Acids Res 29 : 2251 2259.
49. Zawilak, A., Durrant, M.C., Jakimowicz, P., Backert, S. Zakrzewska-Czerwinska, J. (2003) DNA binding specificity of the replication initiator protein, DnaA from Helicobacter pylori. J Mol Biol 334 : 933 947.
50. Zawilak-Pawlik, A., Kois, A., Majka, J., Jakimowicz, D., Smulczyk-Krawczyszyn, A., Messer, W. Zakrzewska-Czerwinska, J. (2005) Architecture of bacterial replication initiation complexes: orisomes from four unrelated bacteria. Biochem J 389 : 471 481.
51. Zawilak-Pawlik, A.M., Kois, A. Zakrzewska-Czerwinska, J. (2006) A simplified method for purification of recombinant soluble DnaA proteins. Protein Expr Purif 48 : 126 133.